RchiOBHm_Chr2g0164681

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000216
Physical Location & Seq
Forward (+)
79688753 .. 79689683
931 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53271

Sequence Viewer

Length: 591 bp
ATGCTGTATTTTGTGGGTGATGAACCTGGTGATCAAAATTTTCTTTTGGGGTTGGATCCATTCATGATCAACAATAGTAACAGTGCTCTTAGTTTATCTAGTACTAGCCGTAATAGTACTAATGGTGATGATATCATTGATGGCTATAAATGTCGTTTCATTCGATTTGATGATCCAGACTCTTTTCTACTTCGGTATCTTGGTGAATACAGAGGGTGTCTGCACATGTGCGACTATCATGATCATACCTGTACGTTTTTTTTCCGGGAGTTGAAAGAAGAAGAAATGCACGGAGGAGCTGGCAAATTATGTTTGGAAGGCATGATGAAGGATTATTCACCGGACATAAAAATGGTTCCGGGTTATGATATTGTTTATTTACAATTTTTAGACCCCAATAACGAGGATATTTTATATATGTACATTCGTAAAGACATTGTCAGGTACAACATTCGAACAAGAGATTGGTTAAAGCTGGTTGAAAACATTCCCTATGGGAATTCTTTTCTCTTTCCAATTGTGCTCACTTGGTGGCCAACACCAGTTCCTAGACTACCGCCACATGCCCAATCTGTGGGAATAAAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

196

Amino Acids

22.86

Weight (kDa)

5.04

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 574
AciI CCGC 1 cut(s) 557
AclWI GGATC 3 cut(s) 50, 63, 167
AcoI YGGCCR 1 cut(s) 533
AcsI RAATTY 2 cut(s) 37, 499
AdeI CACNNNGTG 1 cut(s) 531
AfaI GTAC 5 cut(s) 103, 118, 253, 422, 446
AfiI CCNNNNNNNGG 1 cut(s) 574
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 2 cut(s) 274, 482
AjnI CCWGG 1 cut(s) 25
AjuI GAANNNNNNNTTGG 2 cut(s) 448, 480
AluBI AGCT 3 cut(s) 299, 475, 586
AluI AGCT 3 cut(s) 299, 475, 586
Alw21I GWGCWC 2 cut(s) 88, 525
AlwI GGATC 3 cut(s) 50, 63, 167
AoxI GGCC 1 cut(s) 533
ApoI RAATTY 2 cut(s) 37, 499
Asp700I GAANNNNTTC 1 cut(s) 486
AsuC2I CCSGG 2 cut(s) 266, 360
AsuHPI GGTGA 5 cut(s) 29, 41, 137, 215, 330
AsuII TTCGAA 1 cut(s) 454
BaeI ACNNNNGTAYC 2 cut(s) 179, 212
BalI TGGCCA 1 cut(s) 535
BamHI GGATCC 1 cut(s) 55
Bbv12I GWGCWC 2 cut(s) 88, 525
BccI CCATC 1 cut(s) 134
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 27
BclI TGATCA 3 cut(s) 31, 66, 241
BcnI CCSGG 2 cut(s) 266, 360
BfaI CTAG 3 cut(s) 99, 105, 549
BmcAI AGTACT 2 cut(s) 103, 118
Bme1390I CCNGG 3 cut(s) 27, 266, 360
BmiI GGNNCC 2 cut(s) 57, 357
BmrFI CCNGG 3 cut(s) 27, 266, 360
Bpu14I TTCGAA 1 cut(s) 454
BpuMI CCSGG 2 cut(s) 266, 360
BsaWI WCCGGW 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 574
Bse1I ACTGG 1 cut(s) 542
BseBI CCWGG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 574
BseNI ACTGG 1 cut(s) 542
BseRI GAGGAG 1 cut(s) 309
BsgI GTGCAG 1 cut(s) 206
BshFI GGCC 1 cut(s) 535
BsiHKAI GWGCWC 2 cut(s) 88, 525
BsiSI CCGG 3 cut(s) 265, 341, 359
BslI CCNNNNNNNGG 1 cut(s) 574
BsnI GGCC 1 cut(s) 535
Bsp119I TTCGAA 1 cut(s) 454
Bsp1286I GDGCHC 2 cut(s) 88, 525
Bsp1407I TGTACA 1 cut(s) 420
Bsp143I GATC 5 cut(s) 31, 55, 66, 172, 241
BspACI CCGC 1 cut(s) 557
BspANI GGCC 1 cut(s) 535
BspHI TCATGA 2 cut(s) 63, 238
BspLI GGNNCC 2 cut(s) 57, 357
BspPI GGATC 3 cut(s) 50, 63, 167
BspT104I TTCGAA 1 cut(s) 454
BsrGI TGTACA 1 cut(s) 420
BsrI ACTGG 1 cut(s) 542
BssMI GATC 5 cut(s) 31, 55, 66, 172, 241
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 83
BstAUI TGTACA 1 cut(s) 420
BstBI TTCGAA 1 cut(s) 454
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 89
BstKTI GATC 5 cut(s) 34, 58, 69, 175, 244
BstMBI GATC 5 cut(s) 31, 55, 66, 172, 241
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 2 cut(s) 229, 566
BstSCI CCNGG 3 cut(s) 25, 264, 358
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 535
BtsIMutI CAGTG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 301
CciI TCATGA 2 cut(s) 63, 238
CsiI ACCWGGT 1 cut(s) 25
Csp6I GTAC 5 cut(s) 102, 117, 252, 421, 445
CviAII CATG 5 cut(s) 64, 226, 239, 322, 563
CviJI RGCY 6 cut(s) 108, 144, 299, 475, 535, 586
CviKI_1 RGCY 6 cut(s) 108, 144, 299, 475, 535, 586
CviQI GTAC 5 cut(s) 102, 117, 252, 421, 445
DdeI CTNAG 1 cut(s) 89
DpnI GATC 5 cut(s) 33, 57, 68, 174, 243
DpnII GATC 5 cut(s) 31, 55, 66, 172, 241
DraIII CACNNNGTG 1 cut(s) 531
EaeI YGGCCR 1 cut(s) 533
Eco32I GATATC 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 499
EcoRII CCWGG 1 cut(s) 25
EcoRV GATATC 1 cut(s) 133
FaeI CATG 5 cut(s) 67, 229, 242, 325, 566
FatI CATG 5 cut(s) 63, 225, 238, 321, 562
FbaI TGATCA 3 cut(s) 31, 66, 241
FspBI CTAG 3 cut(s) 99, 105, 549
HaeIII GGCC 1 cut(s) 535
HapII CCGG 3 cut(s) 265, 341, 359
Hin1II CATG 5 cut(s) 67, 229, 242, 325, 566
HinfI GANTC 1 cut(s) 179
HpaII CCGG 3 cut(s) 265, 341, 359
HphI GGTGA 5 cut(s) 29, 41, 137, 215, 330
Hpy188I TCNGA 1 cut(s) 590
Hpy188III TCNNGA 3 cut(s) 64, 176, 239
HpyAV CCTTC 2 cut(s) 311, 322
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 2 cut(s) 223, 289
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 5 cut(s) 67, 229, 242, 325, 566
Ksp22I TGATCA 3 cut(s) 31, 66, 241
Kzo9I GATC 5 cut(s) 31, 55, 66, 172, 241
LmnI GCTCC 1 cut(s) 296
MabI ACCWGGT 1 cut(s) 25
MaeI CTAG 3 cut(s) 99, 105, 549
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 77
MalI GATC 5 cut(s) 33, 57, 68, 174, 243
MboI GATC 5 cut(s) 31, 55, 66, 172, 241
MboII GAAGA 2 cut(s) 290, 293
MfeI CAATTG 1 cut(s) 516
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 88, 525
MlsI TGGCCA 1 cut(s) 535
MluCI AATT 5 cut(s) 37, 305, 383, 499, 516
MluNI TGGCCA 1 cut(s) 535
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 3 cut(s) 206, 287, 397
Mox20I TGGCCA 1 cut(s) 535
MroXI GAANNNNTTC 1 cut(s) 486
MscI TGGCCA 1 cut(s) 535
MseI TTAA 1 cut(s) 470
MslI CAYNNNNRTG 1 cut(s) 350
Msp20I TGGCCA 1 cut(s) 535
MspI CCGG 3 cut(s) 265, 341, 359
MspR9I CCNGG 3 cut(s) 27, 266, 360
MunI CAATTG 1 cut(s) 516
MvaI CCWGG 1 cut(s) 27
NciI CCSGG 2 cut(s) 266, 360
NdeII GATC 5 cut(s) 31, 55, 66, 172, 241
NlaIII CATG 5 cut(s) 67, 229, 242, 325, 566
NlaIV GGNNCC 2 cut(s) 57, 357
NspI RCATGY 2 cut(s) 229, 566
NspV TTCGAA 1 cut(s) 454
PagI TCATGA 2 cut(s) 63, 238
PciI ACATGT 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 486
PflFI GACNNNGTC 1 cut(s) 437
PflMI CCANNNNNTGG 1 cut(s) 574
PfoI TCCNGGA 1 cut(s) 264
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PscI ACATGT 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 2 cut(s) 57, 357
PsuI RGATCY 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 437
RsaI GTAC 5 cut(s) 103, 118, 253, 422, 446
RsaNI GTAC 5 cut(s) 102, 117, 252, 421, 445
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 1 cut(s) 470
Sau3AI GATC 5 cut(s) 31, 55, 66, 172, 241
ScaI AGTACT 2 cut(s) 103, 118
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 3 cut(s) 27, 266, 360
SduI GDGCHC 2 cut(s) 88, 525
SetI ASST 7 cut(s) 28, 251, 257, 301, 446, 477, 588
SexAI ACCWGGT 1 cut(s) 25
SfuI TTCGAA 1 cut(s) 454
SmiMI CAYNNNNRTG 1 cut(s) 350
Sse9I AATT 5 cut(s) 37, 305, 383, 499, 516
SsiI CCGC 1 cut(s) 557
SspMI CTAG 3 cut(s) 99, 105, 549
StyD4I CCNGG 3 cut(s) 25, 264, 358
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 1 cut(s) 257
TaqI TCGA 2 cut(s) 163, 454
TasI AATT 5 cut(s) 37, 305, 383, 499, 516
TatI WGTACW 3 cut(s) 101, 116, 420
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TscAI CASTG 1 cut(s) 88
TspDTI ATGAA 4 cut(s) 36, 52, 148, 341
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 1 cut(s) 88
Tth111I GACNNNGTC 1 cut(s) 437
Van91I CCANNNNNTGG 1 cut(s) 574
XapI RAATTY 2 cut(s) 37, 499
XceI RCATGY 2 cut(s) 229, 566
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 3 cut(s) 99, 105, 549
ZrmI AGTACT 2 cut(s) 103, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.