FvH4_6g31981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000216
Physical Location & Seq
Forward (+)
25078600 .. 25079650
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31981.t1

Sequence Viewer

Length: 963 bp
ATGAGCTGTCATGGTTTGAAAACAAAACCAGTTATTCAAGGCAGCTACAATGACTTAATTCTGTGCTGCGCAAGTAAGTTTCATCAACGAGACTACTTCATCTGCAATCCATCCACAGTACAATGGGTTGCTCTTCCTCCACCCCCTCAAGTCTACACTTGCACGCTTGTAGGATTCATCTGCGATCATCCCTACTATGACTGTAGGTCAGATGATCAGGGAGGAAGTATCTTCCATCTCAATGCTGAGTATAGGTACAGGGTGGTGAGATTAATTTGTCCCGAGGATCAGGGGGACACACTTTTGAATGAATTTAAAGTGCAGATCTTCTCTTCTGAGACCAGTGATTGGATAGAGACAATTGTATCGTCCACGACAGCCTTTTGTTTTGATTTCATTAATGCTTCCATAAGCTATGCTAACAAGGGAATGCTATATTGGGGTGGTCATAGTACAGATGGTGATGAGCAGGATTTTCTCATTGGAATTAATCCGTTCACAATCAACCGCAGCAATAATACTAATTTGTCTAGTACGAGCAGCAGGGTGTACAAAGGGTGTATGCGGTTATACGAGTATGATATAGAAACATATGATTTATATATTGCGGACTTGGATGTTGAAGAAATCTATAGAGTGCGTCTGGATCAGAGGAGGGTTTGTACACTGAATGAAGAGATGATTTCTAGTTTTGATGCGGGGGTCACAATTTTAGGTTTCGATCCAGATGATGATGATATTTTGTATCTGGTCAGAAGTATCCGGAGAAAGAAAGACATAATCATTAAGTGTAATATCCGTACAGGGACATGGTCGACGGTTGCTGAAAATGTTTTTTACCAATTTGATGGCTTGTACACTCTTGCTGTTCCATGGTGGCCGACACCAGTTCGTATGCTAGCACCACATTCACCTTCTCTATCACCTCAGTTTCAAGGCCCATGCCACTCGAACTTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

321

Amino Acids

36.64

Weight (kDa)

4.91

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 14 - 276 3e-10 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 70
AccB7I CCANNNNNTGG 1 cut(s) 348
AccI GTMKAC 2 cut(s) 153, 815
AccIII TCCGGA 1 cut(s) 762
AciI CCGC 4 cut(s) 508, 565, 608, 698
AclWI GGATC 3 cut(s) 294, 654, 716
AcoI YGGCCR 1 cut(s) 878
AcsI RAATTY 1 cut(s) 311
AfaI GTAC 8 cut(s) 120, 257, 454, 535, 551, 664, 802, 857
AfiI CCNNNNNNNGG 1 cut(s) 348
AgsI TTSAA 5 cut(s) 19, 38, 307, 623, 935
AhdI GACNNNNNGTC 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 421, 453
AluBI AGCT 3 cut(s) 6, 45, 414
AluI AGCT 3 cut(s) 6, 45, 414
Alw26I GTCTC 3 cut(s) 84, 332, 350
AlwI GGATC 3 cut(s) 294, 654, 716
Ama87I CYCGRG 1 cut(s) 281
Aor13HI TCCGGA 1 cut(s) 762
AoxI GGCC 2 cut(s) 878, 937
ApeKI GCWGC 4 cut(s) 42, 66, 510, 540
ApoI RAATTY 1 cut(s) 311
AseI ATTAAT 3 cut(s) 272, 399, 489
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 938
AsuHPI GGTGA 4 cut(s) 277, 473, 903, 915
AsuNHI GCTAGC 1 cut(s) 898
AvaI CYCGRG 1 cut(s) 281
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
BbvI GCAGC 4 cut(s) 53, 54, 522, 552
BccI CCATC 4 cut(s) 118, 243, 452, 842
BciVI GTATCC 1 cut(s) 770
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 3 cut(s) 84, 332, 350
BfaI CTAG 3 cut(s) 531, 687, 899
BfmI CTRYAG 2 cut(s) 202, 631
BfuI GTATCC 1 cut(s) 770
BglII AGATCT 1 cut(s) 324
BisI GCNGC 4 cut(s) 43, 67, 511, 541
BlsI GCNGC 4 cut(s) 44, 68, 512, 542
BmeRI GACNNNNNGTC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 938
BmsI GCATC 1 cut(s) 685
BmtI GCTAGC 1 cut(s) 902
BpuEI CTTGAG 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 282, 872
BsaWI WCCGGW 1 cut(s) 762
BsaXI ACNNNNNCTCC 2 cut(s) 646, 676
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 3 cut(s) 29, 342, 887
BseAI TCCGGA 1 cut(s) 762
BseDI CCNNGG 2 cut(s) 282, 872
BseGI GGATG 3 cut(s) 110, 187, 622
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMII CTCAG 3 cut(s) 237, 327, 941
BseNI ACTGG 3 cut(s) 29, 342, 887
BseRI GAGGAG 1 cut(s) 667
BseXI GCAGC 4 cut(s) 53, 54, 522, 552
BsgI GTGCAG 1 cut(s) 341
BshFI GGCC 2 cut(s) 880, 939
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 1 cut(s) 763
BslFI GGGAC 3 cut(s) 264, 308, 820
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 3 cut(s) 84, 332, 350
BsmFI GGGAC 3 cut(s) 264, 308, 820
BsmI GAATGC 1 cut(s) 435
BsnI GGCC 2 cut(s) 880, 939
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 281
Bsp13I TCCGGA 1 cut(s) 762
Bsp1407I TGTACA 3 cut(s) 549, 662, 855
Bsp143I GATC 6 cut(s) 184, 214, 286, 324, 646, 721
Bsp19I CCATGG 1 cut(s) 872
BspACI CCGC 4 cut(s) 508, 565, 608, 698
BspANI GGCC 2 cut(s) 880, 939
BspCNI CTCAG 3 cut(s) 238, 328, 940
BspEI TCCGGA 1 cut(s) 762
BspOI GCTAGC 1 cut(s) 902
BspPI GGATC 3 cut(s) 294, 654, 716
BspQI GCTCTTC 1 cut(s) 138
BspTNI GGTCTC 1 cut(s) 332
BsrGI TGTACA 3 cut(s) 549, 662, 855
BsrI ACTGG 3 cut(s) 29, 342, 887
BssECI CCNNGG 2 cut(s) 282, 872
BssMI GATC 6 cut(s) 184, 214, 286, 324, 646, 721
BssT1I CCWWGG 1 cut(s) 872
Bst4CI ACNGT 3 cut(s) 118, 203, 820
Bst6I CTCTTC 3 cut(s) 138, 337, 669
BstAUI TGTACA 3 cut(s) 549, 662, 855
BstC8I GCNNGC 2 cut(s) 164, 900
BstDEI CTNAG 3 cut(s) 246, 336, 927
BstDSI CCRYGG 1 cut(s) 872
BstF5I GGATG 3 cut(s) 110, 187, 622
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 6 cut(s) 187, 217, 289, 327, 649, 724
BstMAI GTCTC 3 cut(s) 84, 332, 350
BstMBI GATC 6 cut(s) 184, 214, 286, 324, 646, 721
BstSFI CTRYAG 2 cut(s) 202, 631
BstV1I GCAGC 4 cut(s) 53, 54, 522, 552
BstX2I RGATCY 1 cut(s) 324
BstXI CCANNNNNNTGG 1 cut(s) 848
BstYI RGATCY 1 cut(s) 324
BsuI GTATCC 1 cut(s) 770
BsuRI GGCC 2 cut(s) 880, 939
BtgI CCRYGG 1 cut(s) 872
BtsCI GGATG 3 cut(s) 110, 187, 622
BtsIMutI CAGTG 2 cut(s) 349, 665
Cac8I GCNNGC 2 cut(s) 164, 900
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 938
CseI GACGC 1 cut(s) 629
Csp6I GTAC 8 cut(s) 119, 256, 453, 534, 550, 663, 801, 856
CviAII CATG 4 cut(s) 11, 810, 873, 942
CviJI RGCY 7 cut(s) 6, 45, 380, 414, 852, 880, 939
CviKI_1 RGCY 7 cut(s) 6, 45, 380, 414, 852, 880, 939
CviQI GTAC 8 cut(s) 119, 256, 453, 534, 550, 663, 801, 856
DdeI CTNAG 3 cut(s) 246, 336, 927
DpnI GATC 6 cut(s) 186, 216, 288, 326, 648, 723
DpnII GATC 6 cut(s) 184, 214, 286, 324, 646, 721
DraI TTTAAA 1 cut(s) 316
DriI GACNNNNNGTC 1 cut(s) 205
EaeI YGGCCR 1 cut(s) 878
Eam1104I CTCTTC 3 cut(s) 138, 337, 669
Eam1105I GACNNNNNGTC 1 cut(s) 205
EarI CTCTTC 3 cut(s) 138, 337, 669
Eco130I CCWWGG 1 cut(s) 872
Eco31I GGTCTC 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 872
ErhI CCWWGG 1 cut(s) 872
FaeI CATG 4 cut(s) 14, 813, 876, 945
FaqI GGGAC 3 cut(s) 264, 308, 820
FatI CATG 4 cut(s) 10, 809, 872, 941
FauI CCCGC 1 cut(s) 691
FauNDI CATATG 1 cut(s) 592
FbaI TGATCA 1 cut(s) 214
FblI GTMKAC 2 cut(s) 153, 815
Fnu4HI GCNGC 4 cut(s) 43, 67, 511, 541
FokI GGATG 3 cut(s) 97, 174, 629
Fsp4HI GCNGC 4 cut(s) 43, 67, 511, 541
FspBI CTAG 3 cut(s) 531, 687, 899
FspI TGCGCA 1 cut(s) 70
GlaI GCGC 1 cut(s) 70
GluI GCNGC 4 cut(s) 43, 67, 511, 541
HaeIII GGCC 2 cut(s) 880, 939
HapII CCGG 1 cut(s) 763
HgaI GACGC 1 cut(s) 629
HhaI GCGC 1 cut(s) 71
Hin1II CATG 4 cut(s) 14, 813, 876, 945
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 1 cut(s) 816
HindII GTYRAC 1 cut(s) 816
HinfI GANTC 1 cut(s) 174
HpaII CCGG 1 cut(s) 763
HphI GGTGA 4 cut(s) 277, 473, 903, 915
Hpy166II GTNNAC 7 cut(s) 154, 372, 498, 550, 665, 816, 858
Hpy188I TCNGA 4 cut(s) 211, 337, 651, 755
Hpy188III TCNNGA 4 cut(s) 281, 644, 725, 763
Hpy8I GTNNAC 7 cut(s) 154, 372, 498, 550, 665, 816, 858
Hpy99I CGWCG 1 cut(s) 820
HpyAV CCTTC 1 cut(s) 924
HpyCH4III ACNGT 3 cut(s) 118, 203, 820
HpyCH4V TGCA 3 cut(s) 105, 162, 322
HpyF3I CTNAG 3 cut(s) 246, 336, 927
Hsp92II CATG 4 cut(s) 14, 813, 876, 945
HspAI GCGC 1 cut(s) 69
Kpn2I TCCGGA 1 cut(s) 762
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 6 cut(s) 184, 214, 286, 324, 646, 721
LguI GCTCTTC 1 cut(s) 138
Lsp1109I GCAGC 4 cut(s) 53, 54, 522, 552
LweI GCATC 1 cut(s) 685
MaeI CTAG 3 cut(s) 531, 687, 899
MaeIII GTNAC 1 cut(s) 703
MalI GATC 6 cut(s) 186, 216, 288, 326, 648, 723
MboI GATC 6 cut(s) 184, 214, 286, 324, 646, 721
MboII GAAGA 6 cut(s) 125, 223, 319, 324, 635, 686
MfeI CAATTG 1 cut(s) 360
MflI RGATCY 1 cut(s) 324
MluCI AATT 8 cut(s) 57, 273, 311, 360, 486, 523, 708, 842
MnlI CCTC 7 cut(s) 147, 156, 215, 277, 645, 648, 936
MroI TCCGGA 1 cut(s) 762
MseI TTAA 6 cut(s) 56, 272, 315, 399, 489, 786
MslI CAYNNNNRTG 1 cut(s) 240
MspI CCGG 1 cut(s) 763
MunI CAATTG 1 cut(s) 360
Mva1269I GAATGC 1 cut(s) 435
NcoI CCATGG 1 cut(s) 872
NdeI CATATG 1 cut(s) 592
NdeII GATC 6 cut(s) 184, 214, 286, 324, 646, 721
NheI GCTAGC 1 cut(s) 898
NlaIII CATG 4 cut(s) 14, 813, 876, 945
NmuCI GTSAC 1 cut(s) 703
NsbI TGCGCA 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 138
PctI GAATGC 1 cut(s) 435
PfeI GAWTC 1 cut(s) 174
PflFI GACNNNGTC 1 cut(s) 811
PflMI CCANNNNNTGG 1 cut(s) 348
PkrI GCNGC 4 cut(s) 44, 68, 512, 542
PshBI ATTAAT 3 cut(s) 272, 399, 489
PspPI GGNCC 1 cut(s) 938
PsuI RGATCY 1 cut(s) 324
PsyI GACNNNGTC 1 cut(s) 811
RsaI GTAC 8 cut(s) 120, 257, 454, 535, 551, 664, 802, 857
RsaNI GTAC 8 cut(s) 119, 256, 453, 534, 550, 663, 801, 856
RseI CAYNNNNRTG 1 cut(s) 240
SalI GTCGAC 1 cut(s) 814
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 6 cut(s) 56, 272, 315, 399, 489, 786
SatI GCNGC 4 cut(s) 43, 67, 511, 541
Sau3AI GATC 6 cut(s) 184, 214, 286, 324, 646, 721
Sau96I GGNCC 1 cut(s) 938
SetI ASST 8 cut(s) 8, 47, 209, 257, 416, 718, 916, 928
SfaNI GCATC 1 cut(s) 685
SfcI CTRYAG 2 cut(s) 202, 631
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
Sse9I AATT 8 cut(s) 57, 273, 311, 360, 486, 523, 708, 842
SsiI CCGC 4 cut(s) 508, 565, 608, 698
SspMI CTAG 3 cut(s) 531, 687, 899
StyI CCWWGG 1 cut(s) 872
TaaI ACNGT 3 cut(s) 118, 203, 820
TaqI TCGA 3 cut(s) 720, 815, 950
TasI AATT 8 cut(s) 57, 273, 311, 360, 486, 523, 708, 842
TatI WGTACW 5 cut(s) 118, 452, 549, 662, 855
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 6 cut(s) 56, 272, 315, 399, 489, 786
Tru9I TTAA 6 cut(s) 56, 272, 315, 399, 489, 786
TscAI CASTG 2 cut(s) 349, 672
TseFI GTSAC 1 cut(s) 703
TseI GCWGC 4 cut(s) 42, 66, 510, 540
Tsp45I GTSAC 1 cut(s) 703
TspDTI ATGAA 6 cut(s) 71, 88, 166, 324, 385, 687
TspGWI ACGGA 2 cut(s) 483, 788
TspRI CASTG 2 cut(s) 349, 672
Tth111I GACNNNGTC 1 cut(s) 811
Van91I CCANNNNNTGG 1 cut(s) 348
VspI ATTAAT 3 cut(s) 272, 399, 489
XapI RAATTY 1 cut(s) 311
XmiI GTMKAC 2 cut(s) 153, 815
XspI CTAG 3 cut(s) 531, 687, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.