FvH4_6g46380

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
35399461 .. 35399838
378 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46380.t1

Sequence Viewer

Length: 378 bp
ATGACCTATGATTATATTCATGTTCCGAAAAGATTGAAAGTATCATCAGAACAAGGAGCTGCTCTGCTTGTGAGATCATCAGCAGCCCTAAATTTGTTGAACATTAGTATTAATGATCTCCCAGACGATGTACTCGTTGAAATCCTTCATCGAGTCGGTTGCTACAAATCCATTGCTCACTGCAAGTGTGTCTCCAAGCGTTGGTGCAATCTTCGTACAAGAAAGTGGTCAGTGCCTTATCAAACGACTAAAGCACCTAGATACTTCTTCCGACTTGATGTCCCGTGGTTTACTGGTGGCGGACTCCTGTTCCTAGACTTCCAGCTTAATCCCAGTTTCAAGAAGGCACAAGCGCTTGTTCTGAAAATGGTTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

14.34

Weight (kDa)

9.77

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 37 - 71 9.3e-07 F-box-like
F-box PF00646 37 - 71 1e-05 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 201
AciI CCGC 1 cut(s) 300
AcsI RAATTY 1 cut(s) 91
AfaI GTAC 2 cut(s) 132, 217
AfeI AGCGCT 1 cut(s) 354
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 4 cut(s) 37, 100, 140, 340
AhdI GACNNNNNGTC 1 cut(s) 278
AluBI AGCT 2 cut(s) 59, 325
AluI AGCT 2 cut(s) 59, 325
Alw26I GTCTC 1 cut(s) 196
Aor51HI AGCGCT 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 59, 83
ApoI RAATTY 1 cut(s) 91
AseI ATTAAT 1 cut(s) 111
Asp700I GAANNNNTTC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 355
BbvI GCAGC 2 cut(s) 46, 95
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 2 cut(s) 258, 314
BfoI RGCGCY 1 cut(s) 356
BisI GCNGC 2 cut(s) 60, 84
BlsI GCNGC 2 cut(s) 61, 85
BmeRI GACNNNNNGTC 1 cut(s) 278
BmrI ACTGGG 1 cut(s) 327
BmuI ACTGGG 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 2 cut(s) 298, 333
Bse3DI GCAATG 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 284
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 171
BseNI ACTGG 2 cut(s) 298, 333
BseXI GCAGC 2 cut(s) 46, 95
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 266
Bsp143I GATC 2 cut(s) 74, 115
BspACI CCGC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 2 cut(s) 298, 333
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 2 cut(s) 74, 115
BstDSI CCRYGG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 2 cut(s) 77, 118
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 2 cut(s) 74, 115
BstV1I GCAGC 2 cut(s) 46, 95
BtgI CCRYGG 1 cut(s) 284
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 178, 237
CfoI GCGC 1 cut(s) 355
Csp6I GTAC 2 cut(s) 131, 216
CviAII CATG 1 cut(s) 20
CviJI RGCY 3 cut(s) 59, 86, 325
CviKI_1 RGCY 3 cut(s) 59, 86, 325
CviQI GTAC 2 cut(s) 131, 216
DpnI GATC 2 cut(s) 76, 117
DpnII GATC 2 cut(s) 74, 115
DriI GACNNNNNGTC 1 cut(s) 278
Eam1105I GACNNNNNGTC 1 cut(s) 278
EciI GGCGGA 1 cut(s) 315
Eco47III AGCGCT 1 cut(s) 354
FaeI CATG 1 cut(s) 23
FaiI YATR 3 cut(s) 9, 15, 21
FaqI GGGAC 1 cut(s) 266
FatI CATG 1 cut(s) 19
Fnu4HI GCNGC 2 cut(s) 60, 84
Fsp4HI GCNGC 2 cut(s) 60, 84
FspBI CTAG 2 cut(s) 258, 314
GlaI GCGC 1 cut(s) 354
GluI GCNGC 2 cut(s) 60, 84
HaeII RGCGCY 1 cut(s) 356
HhaI GCGC 1 cut(s) 355
Hin1II CATG 1 cut(s) 23
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HinfI GANTC 2 cut(s) 153, 303
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 4 cut(s) 27, 49, 272, 363
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 155, 337
HpyCH4V TGCA 2 cut(s) 183, 207
Hsp92II CATG 1 cut(s) 23
HspAI GCGC 1 cut(s) 353
Kzo9I GATC 2 cut(s) 74, 115
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 5 cut(s) 135, 279, 320, 335, 346
Lsp1109I GCAGC 2 cut(s) 46, 95
MaeI CTAG 2 cut(s) 258, 314
MalI GATC 2 cut(s) 76, 117
MboI GATC 2 cut(s) 74, 115
MboII GAAGA 2 cut(s) 203, 259
MluCI AATT 1 cut(s) 91
MlyI GAGTC 2 cut(s) 162, 297
MmeI TCCRAC 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 2 cut(s) 111, 327
NdeII GATC 2 cut(s) 74, 115
NlaIII CATG 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 144
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 2 cut(s) 61, 85
PleI GAGTC 2 cut(s) 161, 297
PpsI GAGTC 2 cut(s) 161, 297
PshBI ATTAAT 1 cut(s) 111
RsaI GTAC 2 cut(s) 132, 217
RsaNI GTAC 2 cut(s) 131, 216
SaqAI TTAA 2 cut(s) 111, 327
SatI GCNGC 2 cut(s) 60, 84
Sau3AI GATC 2 cut(s) 74, 115
SchI GAGTC 2 cut(s) 162, 297
SetI ASST 4 cut(s) 8, 61, 259, 327
Sse9I AATT 1 cut(s) 91
SsiI CCGC 1 cut(s) 300
SspMI CTAG 2 cut(s) 258, 314
TaqI TCGA 1 cut(s) 151
TasI AATT 1 cut(s) 91
TatI WGTACW 1 cut(s) 130
Tru1I TTAA 2 cut(s) 111, 327
Tru9I TTAA 2 cut(s) 111, 327
TscAI CASTG 2 cut(s) 185, 237
TseI GCWGC 2 cut(s) 59, 83
TspDTI ATGAA 2 cut(s) 8, 137
TspRI CASTG 2 cut(s) 185, 237
Van91I CCANNNNNTGG 1 cut(s) 201
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 2 cut(s) 258, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.