Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000216

Physical Location & Seq

Genomic Coordinates Forward (+)

15558901 .. 15561126

Gene Structure 2226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAACTCTCATGATATCGATGATCAGTTAGAAGCAGATGTATACAGTAACTTGCCTTCTCGAAATGATTCTTCAACAGGGAGGAGAAATCGAAACTCGTGTAGATCGAAACACTCAGAGACTGAGCAACGAAGAAGAAGCAAAATCAATGAAAGATTTCAGAGTTTAATGGATATTATACCTCAGAATCAGAATGATCAGAAACGAGATAAAGCTTCTTTCTTGTTGGAGGTTATAGAGTATATTCACTTTCTTCAAGAAAAAGTTCACATGTATGAAGATTCTCACCAAATGTGGTATCAATCCCCAACCAAATTGATTCCTTGGAGAAATAGTCATGGGTCTGTTGCGGAGGAAAATGACCATCCTCAAATCGTTAAAAGCTTTTCAAGTAATGATAAAGTTGCTGCTTCTTCGGGTTTTCTCTTGGATACGTACAATTCAGTAAATCCTGATATTGACTCAGCAGTTAGCACCAAGATTCCTGAACACAGTCCTGTTTCAGCAGTTTCATCGTATCTACGTACCGAGCCTTCGCTGCAGTTTGTTCAGCATGACTTTTGGCAACCAAAAACAAGTTGTGGAACAATTAACTGTTTTACAAATGAATTGTTAACATCTGACGAAAAAACATCAGCCAGCTTGTCCACTGTCTGCTCACAAAGGGTACTTAACACTCTAACTGAAGCACTTAAGTCATCGGGTGTTAACATGTCAGAGACCATGATATCTGTGCAGTTAAGCCTTCGGAAAAGAGAAGATCGCGAGTATTCTGTTGCTGCGTTTGCTTCTGAGGATAATGGTAATAGCATCGCTGATGAAGAAGGGGACTCTCCTACTGAAACTAGAAGCTTCTGCAATGATATTGATCATTCCCAGAAGAGAATAAGACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

298

Amino Acids

33.95

Weight (kDa)

5.5

Isoelectric Point (pI)

58.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	35 - 86	6.6e-17	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38860 AT5G38860
fragaria_vesca	FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica	MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica	Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis	pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis	RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata	RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora	Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa	Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha	Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana	Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	42
AccII	CGCG	1 cut(s)	765
AciI	CCGC	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	705
AfaI	GTAC	3 cut(s)	437, 526, 669
AflII	CTTAAG	1 cut(s)	692
AflIII	ACRYGT	2 cut(s)	270, 711
AgsI	TTSAA	3 cut(s)	75, 257, 390
AluBI	AGCT	4 cut(s)	215, 384, 642, 852
AluI	AGCT	4 cut(s)	215, 384, 642, 852
Alw26I	GTCTC	2 cut(s)	113, 713
AlwNI	CAGNNNCTG	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	407, 538, 779
Asp700I	GAANNNNTTC	3 cut(s)	67, 156, 264
AsuHPI	GGTGA	1 cut(s)	278
BarI	GAAGNNNNNNTAC	4 cut(s)	40, 72, 517, 549
BauI	CACGAG	1 cut(s)	97
BbvI	GCAGC	3 cut(s)	394, 525, 766
BccI	CCATC	1 cut(s)	372
BcgI	CGANNNNNNTGC	2 cut(s)	495, 529
BciVI	GTATCC	1 cut(s)	424
BclI	TGATCA	3 cut(s)	22, 196, 868
BcoDI	GTCTC	2 cut(s)	113, 713
BfaI	CTAG	1 cut(s)	846
BfmI	CTRYAG	1 cut(s)	539
BfrI	CTTAAG	1 cut(s)	692
BfuI	GTATCC	1 cut(s)	424
BisI	GCNGC	3 cut(s)	408, 539, 780
BlsI	GCNGC	3 cut(s)	409, 540, 781
BmsI	GCATC	1 cut(s)	819
Bsa29I	ATCGAT	1 cut(s)	18
BsaAI	YACGTR	2 cut(s)	435, 524
BsaBI	GATNNNNATC	1 cut(s)	867
BsaI	GGTCTC	1 cut(s)	713
BsaJI	CCNNGG	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bse3DI	GCAATG	1 cut(s)	865
Bse8I	GATNNNNATC	1 cut(s)	867
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	867
BseMI	GCAATG	1 cut(s)	865
BseMII	CTCAG	5 cut(s)	114, 129, 197, 477, 783
BseRI	GAGGAG	1 cut(s)	97
BseXI	GCAGC	3 cut(s)	394, 525, 766
BsgI	GTGCAG	1 cut(s)	755
Bsh1236I	CGCG	1 cut(s)	765
BshVI	ATCGAT	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	842
BsmAI	GTCTC	2 cut(s)	113, 713
BsmFI	GGGAC	1 cut(s)	842
Bso31I	GGTCTC	1 cut(s)	713
Bsp143I	GATC	5 cut(s)	22, 104, 196, 760, 868
Bsp68I	TCGCGA	1 cut(s)	765
BspACI	CCGC	1 cut(s)	350
BspCNI	CTCAG	5 cut(s)	115, 128, 196, 476, 784
BspDI	ATCGAT	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	765
BspHI	TCATGA	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	543
BspTI	CTTAAG	1 cut(s)	692
BspTNI	GGTCTC	1 cut(s)	713
BsrDI	GCAATG	1 cut(s)	865
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	5 cut(s)	22, 104, 196, 760, 868
BssNAI	GTATAC	1 cut(s)	43
BssSI	CACGAG	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	323
Bst1107I	GTATAC	1 cut(s)	43
Bst2BI	CACGAG	1 cut(s)	97
Bst4CI	ACNGT	4 cut(s)	47, 494, 596, 652
Bst6I	CTCTTC	1 cut(s)	875
BstAFI	CTTAAG	1 cut(s)	692
BstBAI	YACGTR	2 cut(s)	435, 524
BstC8I	GCNNGC	1 cut(s)	640
BstDEI	CTNAG	5 cut(s)	115, 123, 183, 463, 792
BstF5I	GGATG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	765
BstKTI	GATC	5 cut(s)	25, 107, 199, 763, 871
BstMAI	GTCTC	2 cut(s)	113, 713
BstMBI	GATC	5 cut(s)	22, 104, 196, 760, 868
BstMWI	GCNNNNNNNGC	2 cut(s)	538, 785
BstNSI	RCATGY	2 cut(s)	274, 715
BstSFI	CTRYAG	1 cut(s)	539
BstSNI	TACGTA	2 cut(s)	435, 524
BstUI	CGCG	1 cut(s)	765
BstV1I	GCAGC	3 cut(s)	394, 525, 766
BstZ17I	GTATAC	1 cut(s)	43
Bsu15I	ATCGAT	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	424
BsuTUI	ATCGAT	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	796
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	648
BtuMI	TCGCGA	1 cut(s)	765
Cac8I	GCNNGC	1 cut(s)	640
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	10
ClaI	ATCGAT	1 cut(s)	18
Csp6I	GTAC	3 cut(s)	436, 525, 668
CviAII	CATG	6 cut(s)	11, 271, 338, 554, 712, 724
CviJI	RGCY	7 cut(s)	215, 384, 532, 638, 642, 744, 852
CviKI_1	RGCY	7 cut(s)	215, 384, 532, 638, 642, 744, 852
CviQI	GTAC	3 cut(s)	436, 525, 668
DdeI	CTNAG	5 cut(s)	115, 123, 183, 463, 792
DpnI	GATC	5 cut(s)	24, 106, 198, 762, 870
DpnII	GATC	5 cut(s)	22, 104, 196, 760, 868
Eam1104I	CTCTTC	1 cut(s)	875
EarI	CTCTTC	1 cut(s)	875
Eco105I	TACGTA	2 cut(s)	435, 524
Eco130I	CCWWGG	1 cut(s)	323
Eco31I	GGTCTC	1 cut(s)	713
Eco32I	GATATC	2 cut(s)	16, 729
Eco57I	CTGAAG	1 cut(s)	705
EcoRV	GATATC	2 cut(s)	16, 729
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	6 cut(s)	14, 274, 341, 557, 715, 727
FaqI	GGGAC	1 cut(s)	842
FatI	CATG	6 cut(s)	10, 270, 337, 553, 711, 723
FbaI	TGATCA	3 cut(s)	22, 196, 868
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	3 cut(s)	408, 539, 780
FokI	GGATG	1 cut(s)	351
Fsp4HI	GCNGC	3 cut(s)	408, 539, 780
FspBI	CTAG	1 cut(s)	846
GluI	GCNGC	3 cut(s)	408, 539, 780
Hin1II	CATG	6 cut(s)	14, 274, 341, 557, 715, 727
HincII	GTYRAC	2 cut(s)	615, 709
HindII	GTYRAC	2 cut(s)	615, 709
HindIII	AAGCTT	3 cut(s)	213, 382, 850
HinfI	GANTC	7 cut(s)	68, 187, 281, 319, 461, 481, 830
HpaI	GTTAAC	2 cut(s)	615, 709
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	5 cut(s)	43, 268, 615, 648, 709
Hpy188I	TCNGA	9 cut(s)	118, 162, 186, 192, 201, 622, 718, 750, 793
Hpy188III	TCNNGA	6 cut(s)	11, 60, 257, 452, 485, 764
Hpy8I	GTNNAC	5 cut(s)	43, 268, 615, 648, 709
HpyAV	CCTTC	4 cut(s)	66, 543, 755, 818
HpyCH4III	ACNGT	4 cut(s)	47, 494, 596, 652
HpyCH4IV	ACGT	2 cut(s)	434, 523
HpyCH4V	TGCA	3 cut(s)	541, 736, 858
HpyF10VI	GCNNNNNNNGC	2 cut(s)	538, 785
HpyF3I	CTNAG	5 cut(s)	115, 123, 183, 463, 792
HpySE526I	ACGT	2 cut(s)	434, 523
Hsp92II	CATG	6 cut(s)	14, 274, 341, 557, 715, 727
Ksp22I	TGATCA	3 cut(s)	22, 196, 868
KspAI	GTTAAC	2 cut(s)	615, 709
Kzo9I	GATC	5 cut(s)	22, 104, 196, 760, 868
LpnPI	CCDG	6 cut(s)	63, 465, 498, 510, 652, 890
Lsp1109I	GCAGC	3 cut(s)	394, 525, 766
LweI	GCATC	1 cut(s)	819
MaeI	CTAG	1 cut(s)	846
MaeII	ACGT	2 cut(s)	434, 523
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	5 cut(s)	24, 106, 198, 762, 870
MboI	GATC	5 cut(s)	22, 104, 196, 760, 868
MboII	GAAGA	9 cut(s)	63, 144, 147, 245, 290, 405, 770, 833, 892
MluCI	AATT	4 cut(s)	314, 439, 588, 608
MlyI	GAGTC	2 cut(s)	455, 824
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	6 cut(s)	75, 192, 223, 346, 378, 787
MroXI	GAANNNNTTC	3 cut(s)	67, 156, 264
MseI	TTAA	8 cut(s)	167, 378, 591, 614, 672, 693, 708, 740
MslI	CAYNNNNRTG	1 cut(s)	273
MspCI	CTTAAG	1 cut(s)	692
MvnI	CGCG	1 cut(s)	765
MwoI	GCNNNNNNNGC	2 cut(s)	538, 785
NdeII	GATC	5 cut(s)	22, 104, 196, 760, 868
NlaIII	CATG	6 cut(s)	14, 274, 341, 557, 715, 727
NruI	TCGCGA	1 cut(s)	765
NspI	RCATGY	2 cut(s)	274, 715
PagI	TCATGA	1 cut(s)	10
PciI	ACATGT	2 cut(s)	270, 711
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PdmI	GAANNNNTTC	3 cut(s)	67, 156, 264
PfeI	GAWTC	5 cut(s)	68, 187, 281, 319, 481
PkrI	GCNGC	3 cut(s)	409, 540, 781
PleI	GAGTC	2 cut(s)	455, 824
PpsI	GAGTC	2 cut(s)	455, 824
Ppu21I	YACGTR	2 cut(s)	435, 524
PscI	ACATGT	2 cut(s)	270, 711
PstI	CTGCAG	1 cut(s)	543
PstNI	CAGNNNCTG	1 cut(s)	122
RruI	TCGCGA	1 cut(s)	765
RsaI	GTAC	3 cut(s)	437, 526, 669
RsaNI	GTAC	3 cut(s)	436, 525, 668
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	8 cut(s)	167, 378, 591, 614, 672, 693, 708, 740
SatI	GCNGC	3 cut(s)	408, 539, 780
Sau3AI	GATC	5 cut(s)	22, 104, 196, 760, 868
SchI	GAGTC	2 cut(s)	455, 824
SetI	ASST	8 cut(s)	184, 217, 234, 386, 437, 526, 644, 854
SfaNI	GCATC	1 cut(s)	819
SfcI	CTRYAG	1 cut(s)	539
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
SnaBI	TACGTA	2 cut(s)	435, 524
Sse9I	AATT	4 cut(s)	314, 439, 588, 608
SsiI	CCGC	1 cut(s)	350
SspMI	CTAG	1 cut(s)	846
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	4 cut(s)	47, 494, 596, 652
TaiI	ACGT	2 cut(s)	437, 526
TaqI	TCGA	4 cut(s)	18, 61, 91, 107
TasI	AATT	4 cut(s)	314, 439, 588, 608
TfiI	GAWTC	5 cut(s)	68, 187, 281, 319, 481
Tru1I	TTAA	8 cut(s)	167, 378, 591, 614, 672, 693, 708, 740
Tru9I	TTAA	8 cut(s)	167, 378, 591, 614, 672, 693, 708, 740
TscAI	CASTG	1 cut(s)	655
TseI	GCWGC	3 cut(s)	407, 538, 779
TspDTI	ATGAA	6 cut(s)	17, 165, 291, 501, 621, 834
TspRI	CASTG	1 cut(s)	655
Vha464I	CTTAAG	1 cut(s)	692
XceI	RCATGY	2 cut(s)	274, 715
XmiI	GTMKAC	1 cut(s)	42
XmnI	GAANNNNTTC	3 cut(s)	67, 156, 264
XspI	CTAG	1 cut(s)	846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.