Rroxscaffold_2G00120420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000216
Physical Location & Seq
Forward (+)
52617422 .. 52617961
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120420.1

Sequence Viewer

Length: 540 bp
ATGATCACCAACAGGAACAGTACTAGTTTACCCAGCACTAGCAGTTGTAGTACTCCTGATGATAGTATTGATCACTACAGATGTCGTTTCATTGAATTTGATCAGCGTGACGACAATTATGATCTTGAGTGTGTAGGTGTGAATAGAGGGTGTCTACAGATGTTAGATTATGACAGTGAAAACCATGTTTTGTCTGTTTTGGAGTTGAATGAAGAAGAAATCTCTGCAGGAGCCGGCAAATTTTGTTTGGATCAGAGGGTGAGGGATTATGCACTAGATTGGGAAATGGTTCCAGAAGATGATGATGCTTATGAGTACCTAGTTTTTCTTCTTCCTTTTGACCCTAATGATGATGGTACCTTGTACTTGCATATACGTGACAATTCAAGAATTGGACCGATTTTCATGTACAACATTCATACAGGAGAGTCGTCAAAAATAGTTGAAAAGATTTCACTCGAGCGCTATTGCTTCTACCCACTGGCGCTCCCCTGGTGGCCCACACCAGTTCCAAGACTACCAGTTCGGCTTTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

179

Amino Acids

20.86

Weight (kDa)

4.44

Isoelectric Point (pI)

55.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 356
AccB1I GGYRCC 1 cut(s) 356
AccI GTMKAC 1 cut(s) 154
AclWI GGATC 1 cut(s) 258
AcsI RAATTY 2 cut(s) 95, 239
AfaI GTAC 6 cut(s) 22, 52, 317, 358, 365, 410
AfeI AGCGCT 1 cut(s) 464
AgsI TTSAA 4 cut(s) 95, 208, 387, 446
AhlI ACTAGT 1 cut(s) 23
AjnI CCWGG 1 cut(s) 491
AlwI GGATC 1 cut(s) 258
Ama87I CYCGRG 1 cut(s) 458
Aor51HI AGCGCT 1 cut(s) 464
AoxI GGCC 1 cut(s) 497
ApoI RAATTY 2 cut(s) 95, 239
ArsI GACNNNNNNTTYG 2 cut(s) 507, 539
Asp700I GAANNNNTTC 1 cut(s) 288
Asp718I GGTACC 1 cut(s) 356
AspLEI GCGC 2 cut(s) 465, 487
AspS9I GGNCC 2 cut(s) 395, 498
AsuHPI GGTGA 1 cut(s) 271
AvaI CYCGRG 1 cut(s) 458
AvaII GGWCC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 356
BccI CCATC 1 cut(s) 347
BciT130I CCWGG 1 cut(s) 493
BclI TGATCA 3 cut(s) 3, 70, 100
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 4 cut(s) 24, 39, 275, 320
BfmI CTRYAG 3 cut(s) 76, 155, 225
BfoI RGCGCY 2 cut(s) 466, 488
BmcAI AGTACT 2 cut(s) 22, 52
Bme1390I CCNGG 1 cut(s) 493
Bme18I GGWCC 1 cut(s) 395
BmeT110I CYCGRG 1 cut(s) 458
BmgT120I GGNCC 2 cut(s) 395, 498
BmiI GGNNCC 3 cut(s) 232, 291, 358
BmrFI CCNGG 1 cut(s) 493
BmsI GCATC 1 cut(s) 295
BpuEI CTTGAG 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 491
BsaXI ACNNNNNCTCC 2 cut(s) 471, 501
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 3 cut(s) 486, 506, 521
BseBI CCWGG 1 cut(s) 493
BseDI CCNNGG 1 cut(s) 491
BseNI ACTGG 3 cut(s) 486, 506, 521
BseYI CCCAGC 1 cut(s) 32
BshFI GGCC 1 cut(s) 499
BshNI GGYRCC 1 cut(s) 356
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 1 cut(s) 234
BsnI GGCC 1 cut(s) 499
BsoBI CYCGRG 1 cut(s) 458
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 5 cut(s) 3, 70, 100, 121, 250
BspANI GGCC 1 cut(s) 499
BspLI GGNNCC 3 cut(s) 232, 291, 358
BspMAI CTGCAG 1 cut(s) 229
BspPI GGATC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 233
BsrGI TGTACA 1 cut(s) 408
BsrI ACTGG 3 cut(s) 486, 506, 521
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 5 cut(s) 3, 70, 100, 121, 250
Bst2UI CCWGG 1 cut(s) 493
Bst4CI ACNGT 2 cut(s) 20, 176
BstAUI TGTACA 1 cut(s) 408
BstBAI YACGTR 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 235
BstH2I RGCGCY 2 cut(s) 466, 488
BstHHI GCGC 2 cut(s) 465, 487
BstKTI GATC 5 cut(s) 6, 73, 103, 124, 253
BstMBI GATC 5 cut(s) 3, 70, 100, 121, 250
BstNI CCWGG 1 cut(s) 493
BstSCI CCNGG 1 cut(s) 491
BstSFI CTRYAG 3 cut(s) 76, 155, 225
BsuRI GGCC 1 cut(s) 499
BtsIMutI CAGTG 2 cut(s) 181, 479
Cac8I GCNNGC 1 cut(s) 235
CfoI GCGC 2 cut(s) 465, 487
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 395, 498
Csp6I GTAC 6 cut(s) 21, 51, 316, 357, 364, 409
CviAII CATG 2 cut(s) 185, 406
CviJI RGCY 3 cut(s) 233, 499, 529
CviKI_1 RGCY 3 cut(s) 233, 499, 529
CviQI GTAC 6 cut(s) 21, 51, 316, 357, 364, 409
DpnI GATC 5 cut(s) 5, 72, 102, 123, 252
DpnII GATC 5 cut(s) 3, 70, 100, 121, 250
Eco47I GGWCC 1 cut(s) 395
Eco47III AGCGCT 1 cut(s) 464
Eco88I CYCGRG 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 491
FaeI CATG 2 cut(s) 188, 409
FaiI YATR 9 cut(s) 120, 171, 186, 270, 312, 372, 374, 407, 420
FatI CATG 2 cut(s) 184, 405
FbaI TGATCA 3 cut(s) 3, 70, 100
FblI GTMKAC 1 cut(s) 154
FspBI CTAG 4 cut(s) 24, 39, 275, 320
GlaI GCGC 2 cut(s) 464, 486
GsaI CCCAGC 1 cut(s) 36
HaeII RGCGCY 2 cut(s) 466, 488
HaeIII GGCC 1 cut(s) 499
HapII CCGG 1 cut(s) 234
HhaI GCGC 2 cut(s) 465, 487
Hin1II CATG 2 cut(s) 188, 409
Hin6I GCGC 2 cut(s) 463, 485
HinP1I GCGC 2 cut(s) 463, 485
HinfI GANTC 1 cut(s) 428
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 29, 155
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 4 cut(s) 56, 125, 293, 387
Hpy8I GTNNAC 2 cut(s) 29, 155
HpyCH4III ACNGT 2 cut(s) 20, 176
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 3 cut(s) 227, 272, 370
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 2 cut(s) 188, 409
HspAI GCGC 2 cut(s) 463, 485
KpnI GGTACC 1 cut(s) 360
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Ksp22I TGATCA 3 cut(s) 3, 70, 100
Kzo9I GATC 5 cut(s) 3, 70, 100, 121, 250
LmnI GCTCC 2 cut(s) 230, 492
LweI GCATC 1 cut(s) 295
MaeI CTAG 4 cut(s) 24, 39, 275, 320
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 2 cut(s) 107, 377
MalI GATC 5 cut(s) 5, 72, 102, 123, 252
MboI GATC 5 cut(s) 3, 70, 100, 121, 250
MboII GAAGA 5 cut(s) 224, 227, 308, 320, 323
MluCI AATT 5 cut(s) 95, 115, 239, 382, 390
MlyI GAGTC 1 cut(s) 437
MnlI CCTC 3 cut(s) 140, 249, 255
MroNI GCCGGC 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 375
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 493
MvaI CCWGG 1 cut(s) 493
NaeI GCCGGC 1 cut(s) 235
NdeII GATC 5 cut(s) 3, 70, 100, 121, 250
NgoMIV GCCGGC 1 cut(s) 233
NlaIII CATG 2 cut(s) 188, 409
NlaIV GGNNCC 3 cut(s) 232, 291, 358
NmuCI GTSAC 2 cut(s) 107, 377
PaeR7I CTCGAG 1 cut(s) 458
PdiI GCCGGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 288
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 491
PspFI CCCAGC 1 cut(s) 32
PspGI CCWGG 1 cut(s) 491
PspN4I GGNNCC 3 cut(s) 232, 291, 358
PspPI GGNCC 2 cut(s) 395, 498
PspXI VCTCGAGB 1 cut(s) 458
PstI CTGCAG 1 cut(s) 229
RsaI GTAC 6 cut(s) 22, 52, 317, 358, 365, 410
RsaNI GTAC 6 cut(s) 21, 51, 316, 357, 364, 409
RseI CAYNNNNRTG 1 cut(s) 375
Sau3AI GATC 5 cut(s) 3, 70, 100, 121, 250
Sau96I GGNCC 2 cut(s) 395, 498
ScaI AGTACT 2 cut(s) 22, 52
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 1 cut(s) 493
SetI ASST 4 cut(s) 139, 321, 362, 379
SfaNI GCATC 1 cut(s) 295
SfcI CTRYAG 3 cut(s) 76, 155, 225
Sfr274I CTCGAG 1 cut(s) 458
SinI GGWCC 1 cut(s) 395
SlaI CTCGAG 1 cut(s) 458
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 2 cut(s) 125, 458
SmoI CTYRAG 2 cut(s) 125, 458
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 5 cut(s) 95, 115, 239, 382, 390
SspMI CTAG 4 cut(s) 24, 39, 275, 320
StyD4I CCNGG 1 cut(s) 491
TaaI ACNGT 2 cut(s) 20, 176
TaiI ACGT 1 cut(s) 379
TaqI TCGA 1 cut(s) 459
TaqII GACCGA 1 cut(s) 412
TasI AATT 5 cut(s) 95, 115, 239, 382, 390
TatI WGTACW 4 cut(s) 20, 50, 363, 408
TscAI CASTG 2 cut(s) 181, 486
TseFI GTSAC 2 cut(s) 107, 377
Tsp45I GTSAC 2 cut(s) 107, 377
TspDTI ATGAA 4 cut(s) 79, 225, 394, 407
TspRI CASTG 2 cut(s) 181, 486
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 2 cut(s) 95, 239
XhoI CTCGAG 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 154
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 4 cut(s) 24, 39, 275, 320
ZrmI AGTACT 2 cut(s) 22, 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.