RchiOBHm_Chr6g0276071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000216
Physical Location & Seq
Reverse (-)
38030858 .. 38035218
4361 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24765

Sequence Viewer

Length: 717 bp
ATGACTGCTAATATTGAAAATCTTCCCGAACATGTTTTGGTTGAAATTCTCTGTCGACTTCCTTGCTATAAATTCGTCTCTCAATGCAAGTCTGTGTCCAAACGTTGGTGCACTCTCATGTCAAATCCTTCTTTCATTGGCCGCTTCCTGTGCCTGCAAATGGAAAGGCCAATAATACGTACCATGATAAACGCTGAAGGGGTGGAATTCCTTAACAAGACTTCATCATTGTCCAAGCCACTAACTCCTTTGTTCAGAAGACTGATGAGTATCTACAGTTTGGAGAAAGAGCCAATTGTGGTTGGTACATACAATGACTTGGTTCTGTGTTGTGCAACCGAGTATGAACAACGTGATTACTGCATCTGCAATCCATACACAATCCAATGGGCTGAACTTCCTCCCCCGCCTCGAGTATACGAGTACACACCTGTGGGATTAATCTGCGATCTTCCCTATTATAACAGTAAGTCAGGTGATCAGGAATCAGGAGATACCATCAAGCTTAATTCAGAGTATAGGTGCAGGGTTGTGAGAATTATTTTTTCCCCTGATCAGGAATTTTCCTGCACATTGGGAGTGCAGATCTTCTCTTCTGAGACGGGTGAATGGACAGAATCAATCGTATTCCCCCCAACTGCCGTTAGGTATGAGTCCATTGATCCCAGCATTAGCTTTGCTTGCAACAGAATGTTGTATTGGATGGGTCGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

238

Amino Acids

27.49

Weight (kDa)

5.63

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 45 9e-06 F-box-like
b-prop_At3g26010-like PF24750 73 - 236 8.6e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 462
AccB7I CCANNNNNTGG 1 cut(s) 105
AccI GTMKAC 2 cut(s) 55, 417
AciI CCGC 2 cut(s) 142, 407
AclI AACGTT 1 cut(s) 103
AclWI GGATC 1 cut(s) 656
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 4 cut(s) 45, 71, 206, 560
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 3 cut(s) 181, 307, 425
AfiI CCNNNNNNNGG 3 cut(s) 105, 160, 556
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 2 cut(s) 17, 44
AjuI GAANNNNNNNTTGG 2 cut(s) 682, 714
AleI CACNNNNGTG 1 cut(s) 431
AluBI AGCT 2 cut(s) 505, 675
AluI AGCT 2 cut(s) 505, 675
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 2 cut(s) 82, 593
Alw44I GTGCAC 1 cut(s) 109
AlwI GGATC 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 411
AoxI GGCC 2 cut(s) 139, 167
ApaLI GTGCAC 1 cut(s) 109
ApoI RAATTY 4 cut(s) 45, 71, 206, 560
AseI ATTAAT 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 21
AsuHPI GGTGA 2 cut(s) 488, 617
AvaI CYCGRG 1 cut(s) 411
BaeGI GKGCMC 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 113
BccI CCATC 2 cut(s) 506, 697
BceAI ACGGC 1 cut(s) 626
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BclI TGATCA 2 cut(s) 478, 553
BcoDI GTCTC 2 cut(s) 82, 593
BfmI CTRYAG 1 cut(s) 274
BglII AGATCT 1 cut(s) 585
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 411
BmsI GCATC 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 269
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 160, 556
Bse8I GATNNNNATC 1 cut(s) 269
BseGI GGATG 1 cut(s) 708
BseJI GATNNNNATC 1 cut(s) 269
BseLI CCNNNNNNNGG 3 cut(s) 105, 160, 556
BseMII CTCAG 1 cut(s) 588
BseSI GKGCMC 1 cut(s) 113
BseYI CCCAGC 1 cut(s) 665
BsgI GTGCAG 3 cut(s) 544, 553, 602
BshFI GGCC 2 cut(s) 141, 169
BsiHKAI GWGCWC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 411
BslI CCNNNNNNNGG 3 cut(s) 105, 160, 556
BsmAI GTCTC 2 cut(s) 82, 593
BsmBI CGTCTC 2 cut(s) 82, 593
BsnI GGCC 2 cut(s) 141, 169
BsoBI CYCGRG 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 5 cut(s) 448, 478, 553, 585, 661
BspACI CCGC 2 cut(s) 142, 407
BspANI GGCC 2 cut(s) 141, 169
BspCNI CTCAG 1 cut(s) 589
BspPI GGATC 1 cut(s) 656
BssMI GATC 5 cut(s) 448, 478, 553, 585, 661
BssNAI GTATAC 1 cut(s) 418
Bst1107I GTATAC 1 cut(s) 418
Bst4CI ACNGT 2 cut(s) 278, 467
Bst6I CTCTTC 1 cut(s) 598
BstBAI YACGTR 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 155, 682
BstDEI CTNAG 1 cut(s) 597
BstF5I GGATG 1 cut(s) 708
BstKTI GATC 5 cut(s) 451, 481, 556, 588, 664
BstMAI GTCTC 2 cut(s) 82, 593
BstMBI GATC 5 cut(s) 448, 478, 553, 585, 661
BstMWI GCNNNNNNNGC 2 cut(s) 150, 681
BstNSI RCATGY 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 274
BstSLI GKGCMC 1 cut(s) 113
BstSNI TACGTA 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 265
BstX2I RGATCY 1 cut(s) 585
BstYI RGATCY 1 cut(s) 585
BstZ17I GTATAC 1 cut(s) 418
BsuRI GGCC 2 cut(s) 141, 169
BtsCI GGATG 1 cut(s) 708
Cac8I GCNNGC 2 cut(s) 155, 682
Csp6I GTAC 3 cut(s) 180, 306, 424
CviAII CATG 3 cut(s) 32, 118, 184
CviJI RGCY 7 cut(s) 141, 169, 238, 292, 392, 505, 675
CviKI_1 RGCY 7 cut(s) 141, 169, 238, 292, 392, 505, 675
CviQI GTAC 3 cut(s) 180, 306, 424
DdeI CTNAG 1 cut(s) 597
DpnI GATC 5 cut(s) 450, 480, 555, 587, 663
DpnII GATC 5 cut(s) 448, 478, 553, 585, 661
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 598
EarI CTCTTC 1 cut(s) 598
Eco105I TACGTA 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 206
Esp3I CGTCTC 2 cut(s) 82, 593
FaeI CATG 3 cut(s) 35, 121, 187
FatI CATG 3 cut(s) 31, 117, 183
FauI CCCGC 1 cut(s) 414
FbaI TGATCA 2 cut(s) 478, 553
FblI GTMKAC 2 cut(s) 55, 417
Fnu4HI GCNGC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 142
GsaI CCCAGC 1 cut(s) 669
HaeIII GGCC 2 cut(s) 141, 169
Hin1II CATG 3 cut(s) 35, 121, 187
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 3 cut(s) 485, 617, 653
HphI GGTGA 2 cut(s) 488, 617
Hpy166II GTNNAC 4 cut(s) 56, 111, 418, 426
Hpy188I TCNGA 3 cut(s) 257, 514, 598
Hpy188III TCNNGA 4 cut(s) 26, 482, 489, 557
Hpy8I GTNNAC 4 cut(s) 56, 111, 418, 426
Hpy99I CGWCG 1 cut(s) 714
HpyAV CCTTC 2 cut(s) 138, 191
HpyCH4III ACNGT 2 cut(s) 278, 467
HpyCH4IV ACGT 3 cut(s) 103, 178, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 681
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 3 cut(s) 103, 178, 352
Hsp92II CATG 3 cut(s) 35, 121, 187
Ksp22I TGATCA 2 cut(s) 478, 553
Kzo9I GATC 5 cut(s) 448, 478, 553, 585, 661
LweI GCATC 1 cut(s) 372
MaeII ACGT 3 cut(s) 103, 178, 352
MalI GATC 5 cut(s) 450, 480, 555, 587, 663
MboI GATC 5 cut(s) 448, 478, 553, 585, 661
MboII GAAGA 5 cut(s) 14, 270, 443, 580, 585
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 1 cut(s) 585
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 7 cut(s) 45, 71, 206, 294, 508, 537, 560
MlyI GAGTC 1 cut(s) 662
MnlI CCTC 2 cut(s) 411, 420
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 3 cut(s) 213, 440, 507
MslI CAYNNNNRTG 2 cut(s) 116, 431
MunI CAATTG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 150, 681
NdeII GATC 5 cut(s) 448, 478, 553, 585, 661
NlaIII CATG 3 cut(s) 35, 121, 187
NspI RCATGY 1 cut(s) 35
OliI CACNNNNGTG 1 cut(s) 431
PaeR7I CTCGAG 1 cut(s) 411
PciI ACATGT 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 2 cut(s) 485, 617
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 1 cut(s) 143
PleI GAGTC 1 cut(s) 661
PpsI GAGTC 1 cut(s) 661
Ppu21I YACGTR 1 cut(s) 179
PscI ACATGT 1 cut(s) 31
PshBI ATTAAT 1 cut(s) 440
PsiI TTATAA 1 cut(s) 462
Psp1406I AACGTT 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 665
PspXI VCTCGAGB 1 cut(s) 411
PsuI RGATCY 1 cut(s) 585
RsaI GTAC 3 cut(s) 181, 307, 425
RsaNI GTAC 3 cut(s) 180, 306, 424
RseI CAYNNNNRTG 2 cut(s) 116, 431
SalI GTCGAC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 213, 440, 507
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 5 cut(s) 448, 478, 553, 585, 661
SchI GAGTC 1 cut(s) 662
SduI GDGCHC 1 cut(s) 113
SetI ASST 9 cut(s) 106, 181, 355, 433, 478, 507, 524, 650, 677
SfaNI GCATC 1 cut(s) 372
SfcI CTRYAG 1 cut(s) 274
Sfr274I CTCGAG 1 cut(s) 411
SlaI CTCGAG 1 cut(s) 411
SmiMI CAYNNNNRTG 2 cut(s) 116, 431
SmlI CTYRAG 1 cut(s) 411
SmoI CTYRAG 1 cut(s) 411
SnaBI TACGTA 1 cut(s) 179
Sse9I AATT 7 cut(s) 45, 71, 206, 294, 508, 537, 560
SsiI CCGC 2 cut(s) 142, 407
SspI AATATT 1 cut(s) 13
TaaI ACNGT 2 cut(s) 278, 467
TaiI ACGT 3 cut(s) 106, 181, 355
TaqI TCGA 2 cut(s) 55, 412
TasI AATT 7 cut(s) 45, 71, 206, 294, 508, 537, 560
TatI WGTACW 1 cut(s) 423
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 2 cut(s) 485, 617
Tru1I TTAA 3 cut(s) 213, 440, 507
Tru9I TTAA 3 cut(s) 213, 440, 507
TspDTI ATGAA 3 cut(s) 124, 213, 360
Van91I CCANNNNNTGG 1 cut(s) 105
VneI GTGCAC 1 cut(s) 109
VspI ATTAAT 1 cut(s) 440
XapI RAATTY 4 cut(s) 45, 71, 206, 560
XceI RCATGY 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 411
XmiI GTMKAC 2 cut(s) 55, 417
XmnI GAANNNNTTC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.