Rh2DG594400

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000216
Physical Location & Seq
Reverse (-)
82717441 .. 82718217
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG594400.1

Sequence Viewer

Length: 777 bp
ATGACTTGGTTTTGTGCTGTGCAAGCAAGGATGATCAACATGATTACTACATTTGCAATCCATACACCATGCAACTGGTTACTCTTCCTCCCATCCCTGCATGCCACAAATTTGTGCCAGTGGGATTCATATGCGAGCCCTACTAATTATGAAGAGGAAGATGGTGATCATCGAAAAGAACAAAAGATCAATATTAATGGTGATTATAGGTGCAAGGTTGTGAGAATAGTTCCTTCAGAAATAACTTGTTTTGGCATTACCATTCAAGTCTTCTCTTCTGAGACCGGGGAATGGAGAGAGTCAGTTGTATCAACACCAGGAGACCTTTCCTCGTATATTTTTGATCGGAATATTAGCTTTGCTAACAATGGAATGATATATTGGAGCACTCACGATGGTGATCTCATTGGGTTGGGCCCCTTTGTGAACAACAACAATAGCAGTTCTAGTGATCATTATCAGTGTCGTTTGATTGAATTTGACAGTATTGTGAAGGAGAATTTCACATTTGATTTCTTAGGTGTGTACCAAGGATTTCTGCGCATGTGCGACTACAACTTTGACAATTATTGGCTGCTTGTTTGGGAGATGACTGAAGAAGAACACGAGCAGCTGGTTGTCAATGGACCTGGAAAATGTGGTTTGGAACATGTGAAACGTTATTCACTTCCCCCAAAAATGATTCCTGGTGATCCAGATGGGCATGTTGAATTGCTAACTTTTGACCGAAATAATGGTCATATCCTTTATCTACGCATAAATGGAGAAATCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

258

Amino Acids

29.77

Weight (kDa)

4.83

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 72 - 213 2.4e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 542
AclI AACGTT 1 cut(s) 658
AclWI GGATC 1 cut(s) 686
AcsI RAATTY 3 cut(s) 109, 476, 499
AcuI CTGAAG 2 cut(s) 219, 615
AfaI GTAC 1 cut(s) 527
AfiI CCNNNNNNNGG 1 cut(s) 291
AflIII ACRYGT 1 cut(s) 649
AgsI TTSAA 3 cut(s) 266, 476, 710
AjnI CCWGG 3 cut(s) 316, 628, 685
AjuI GAANNNNNNNTTGG 2 cut(s) 364, 396
AleI CACNNNNGTG 1 cut(s) 396
AluBI AGCT 2 cut(s) 357, 613
AluI AGCT 2 cut(s) 357, 613
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 2 cut(s) 275, 315
AlwI GGATC 1 cut(s) 686
AoxI GGCC 1 cut(s) 415
ApaI GGGCCC 1 cut(s) 419
ApeKI GCWGC 2 cut(s) 574, 610
ApoI RAATTY 3 cut(s) 109, 476, 499
ArsI GACNNNNNNTTYG 4 cut(s) 542, 574, 721, 753
AseI ATTAAT 1 cut(s) 195
AspLEI GCGC 1 cut(s) 543
AspS9I GGNCC 3 cut(s) 415, 416, 626
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 4 cut(s) 176, 212, 410, 701
AvaII GGWCC 1 cut(s) 626
BaeGI GKGCMC 1 cut(s) 419
BanII GRGCYC 2 cut(s) 140, 419
BauI CACGAG 1 cut(s) 605
BbsI GAAGAC 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 2 cut(s) 561, 622
BccI CCATC 4 cut(s) 100, 155, 389, 692
BciT130I CCWGG 3 cut(s) 318, 630, 687
BclI TGATCA 3 cut(s) 33, 166, 451
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 275, 315
BfaI CTAG 2 cut(s) 447, 775
BisI GCNGC 2 cut(s) 575, 611
BlsI GCNGC 2 cut(s) 576, 612
Bme1390I CCNGG 4 cut(s) 286, 318, 630, 687
Bme18I GGWCC 1 cut(s) 626
BmgT120I GGNCC 3 cut(s) 415, 416, 626
BmiI GGNNCC 2 cut(s) 417, 418
BmrFI CCNGG 4 cut(s) 286, 318, 630, 687
BpiI GAAGAC 1 cut(s) 262
BpuMI CCSGG 1 cut(s) 286
BsaBI GATNNNNATC 3 cut(s) 165, 399, 456
BsaI GGTCTC 2 cut(s) 275, 315
BsaJI CCNNGG 2 cut(s) 285, 529
BsaXI ACNNNNNCTCC 3 cut(s) 72, 102, 756
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse1I ACTGG 2 cut(s) 80, 118
Bse8I GATNNNNATC 3 cut(s) 165, 399, 456
BseBI CCWGG 3 cut(s) 318, 630, 687
BseDI CCNNGG 2 cut(s) 285, 529
BseGI GGATG 2 cut(s) 36, 92
BseJI GATNNNNATC 3 cut(s) 165, 399, 456
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 2 cut(s) 80, 118
BseSI GKGCMC 1 cut(s) 419
BseXI GCAGC 2 cut(s) 561, 622
BshFI GGCC 1 cut(s) 417
BsiHKAI GWGCWC 1 cut(s) 389
BsiSI CCGG 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 291
BsmAI GTCTC 2 cut(s) 275, 315
BsnI GGCC 1 cut(s) 417
Bso31I GGTCTC 2 cut(s) 275, 315
Bsp120I GGGCCC 1 cut(s) 415
Bsp1286I GDGCHC 3 cut(s) 140, 389, 419
Bsp143I GATC 7 cut(s) 33, 166, 186, 343, 400, 451, 691
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 417, 418
BspPI GGATC 1 cut(s) 686
BspTNI GGTCTC 2 cut(s) 275, 315
BsrI ACTGG 2 cut(s) 80, 118
BssECI CCNNGG 2 cut(s) 285, 529
BssMI GATC 7 cut(s) 33, 166, 186, 343, 400, 451, 691
BssSI CACGAG 1 cut(s) 605
BssT1I CCWWGG 1 cut(s) 529
Bst2BI CACGAG 1 cut(s) 605
Bst2UI CCWGG 3 cut(s) 318, 630, 687
Bst4CI ACNGT 1 cut(s) 485
Bst6I CTCTTC 3 cut(s) 89, 147, 280
BstC8I GCNNGC 3 cut(s) 24, 102, 136
BstDEI CTNAG 2 cut(s) 279, 517
BstF5I GGATG 2 cut(s) 36, 92
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 7 cut(s) 36, 169, 189, 346, 403, 454, 694
BstMAI GTCTC 2 cut(s) 275, 315
BstMBI GATC 7 cut(s) 33, 166, 186, 343, 400, 451, 691
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 3 cut(s) 318, 630, 687
BstNSI RCATGY 4 cut(s) 104, 547, 653, 707
BstSCI CCNGG 4 cut(s) 284, 316, 628, 685
BstSLI GKGCMC 1 cut(s) 419
BstV1I GCAGC 2 cut(s) 561, 622
BstV2I GAAGAC 1 cut(s) 262
BstXI CCANNNNNNTGG 1 cut(s) 75
BsuRI GGCC 1 cut(s) 417
BtsCI GGATG 2 cut(s) 36, 92
BtsIMutI CAGTG 2 cut(s) 125, 467
Cac8I GCNNGC 3 cut(s) 24, 102, 136
CfoI GCGC 1 cut(s) 543
Cfr13I GGNCC 3 cut(s) 415, 416, 626
Csp6I GTAC 1 cut(s) 526
CviAII CATG 6 cut(s) 40, 69, 101, 544, 650, 704
CviJI RGCY 5 cut(s) 138, 357, 417, 574, 613
CviKI_1 RGCY 5 cut(s) 138, 357, 417, 574, 613
CviQI GTAC 1 cut(s) 526
DdeI CTNAG 2 cut(s) 279, 517
DpnI GATC 7 cut(s) 35, 168, 188, 345, 402, 453, 693
DpnII GATC 7 cut(s) 33, 166, 186, 343, 400, 451, 691
Eam1104I CTCTTC 3 cut(s) 89, 147, 280
EarI CTCTTC 3 cut(s) 89, 147, 280
Eco130I CCWWGG 1 cut(s) 529
Eco24I GRGCYC 2 cut(s) 140, 419
Eco31I GGTCTC 2 cut(s) 275, 315
Eco47I GGWCC 1 cut(s) 626
Eco57I CTGAAG 2 cut(s) 219, 615
EcoO109I RGGNCCY 1 cut(s) 416
EcoRII CCWGG 3 cut(s) 316, 628, 685
EcoT14I CCWWGG 1 cut(s) 529
EcoT38I GRGCYC 2 cut(s) 140, 419
ErhI CCWWGG 1 cut(s) 529
FaeI CATG 6 cut(s) 43, 72, 104, 547, 653, 707
FatI CATG 6 cut(s) 39, 68, 100, 543, 649, 703
FauNDI CATATG 1 cut(s) 130
FbaI TGATCA 3 cut(s) 33, 166, 451
Fnu4HI GCNGC 2 cut(s) 575, 611
FokI GGATG 2 cut(s) 43, 79
FriOI GRGCYC 2 cut(s) 140, 419
Fsp4HI GCNGC 2 cut(s) 575, 611
FspBI CTAG 2 cut(s) 447, 775
FspI TGCGCA 1 cut(s) 542
GlaI GCGC 1 cut(s) 542
GluI GCNGC 2 cut(s) 575, 611
HaeIII GGCC 1 cut(s) 417
HapII CCGG 1 cut(s) 285
HhaI GCGC 1 cut(s) 543
Hin1II CATG 6 cut(s) 43, 72, 104, 547, 653, 707
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HinfI GANTC 3 cut(s) 125, 299, 682
HpaII CCGG 1 cut(s) 285
HphI GGTGA 4 cut(s) 176, 212, 410, 701
Hpy166II GTNNAC 2 cut(s) 427, 526
Hpy188I TCNGA 3 cut(s) 238, 280, 348
Hpy188III TCNNGA 2 cut(s) 392, 695
Hpy8I GTNNAC 2 cut(s) 427, 526
HpyAV CCTTC 2 cut(s) 243, 487
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4IV ACGT 1 cut(s) 658
HpyCH4V TGCA 5 cut(s) 22, 56, 72, 100, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 279, 517
HpySE526I ACGT 1 cut(s) 658
Hsp92II CATG 6 cut(s) 43, 72, 104, 547, 653, 707
HspAI GCGC 1 cut(s) 541
Ksp22I TGATCA 3 cut(s) 33, 166, 451
Kzo9I GATC 7 cut(s) 33, 166, 186, 343, 400, 451, 691
LmnI GCTCC 1 cut(s) 384
Lsp1109I GCAGC 2 cut(s) 561, 622
MaeI CTAG 2 cut(s) 447, 775
MaeII ACGT 1 cut(s) 658
MaeIII GTNAC 1 cut(s) 78
MalI GATC 7 cut(s) 35, 168, 188, 345, 402, 453, 693
MboI GATC 7 cut(s) 33, 166, 186, 343, 400, 451, 691
MboII GAAGA 7 cut(s) 76, 164, 170, 262, 267, 608, 611
MhlI GDGCHC 3 cut(s) 140, 389, 419
MluCI AATT 6 cut(s) 109, 145, 476, 499, 565, 710
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 3 cut(s) 98, 148, 340
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 613
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 4 cut(s) 286, 318, 630, 687
MvaI CCWGG 3 cut(s) 318, 630, 687
MwoI GCNNNNNNNGC 1 cut(s) 23
NciI CCSGG 1 cut(s) 286
NdeI CATATG 1 cut(s) 130
NdeII GATC 7 cut(s) 33, 166, 186, 343, 400, 451, 691
NlaIII CATG 6 cut(s) 43, 72, 104, 547, 653, 707
NlaIV GGNNCC 2 cut(s) 417, 418
NsbI TGCGCA 1 cut(s) 542
NspI RCATGY 4 cut(s) 104, 547, 653, 707
OliI CACNNNNGTG 1 cut(s) 396
PaeI GCATGC 1 cut(s) 104
PciI ACATGT 1 cut(s) 649
PfeI GAWTC 2 cut(s) 125, 682
PkrI GCNGC 2 cut(s) 576, 612
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PscI ACATGT 1 cut(s) 649
PshBI ATTAAT 1 cut(s) 195
Psp1406I AACGTT 1 cut(s) 658
Psp6I CCWGG 3 cut(s) 316, 628, 685
PspGI CCWGG 3 cut(s) 316, 628, 685
PspN4I GGNNCC 2 cut(s) 417, 418
PspOMI GGGCCC 1 cut(s) 415
PspPI GGNCC 3 cut(s) 415, 416, 626
PvuII CAGCTG 1 cut(s) 613
RsaI GTAC 1 cut(s) 527
RsaNI GTAC 1 cut(s) 526
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 575, 611
Sau3AI GATC 7 cut(s) 33, 166, 186, 343, 400, 451, 691
Sau96I GGNCC 3 cut(s) 415, 416, 626
SchI GAGTC 1 cut(s) 308
ScrFI CCNGG 4 cut(s) 286, 318, 630, 687
SduI GDGCHC 3 cut(s) 140, 389, 419
SetI ASST 8 cut(s) 212, 219, 327, 359, 523, 615, 631, 661
SinI GGWCC 1 cut(s) 626
SmiMI CAYNNNNRTG 1 cut(s) 396
SphI GCATGC 1 cut(s) 104
Sse9I AATT 6 cut(s) 109, 145, 476, 499, 565, 710
SspI AATATT 2 cut(s) 193, 352
SspMI CTAG 2 cut(s) 447, 775
StyD4I CCNGG 4 cut(s) 284, 316, 628, 685
StyI CCWWGG 1 cut(s) 529
TaaI ACNGT 1 cut(s) 485
TaiI ACGT 1 cut(s) 661
TaqI TCGA 1 cut(s) 172
TaqII GACCGA 1 cut(s) 741
TasI AATT 6 cut(s) 109, 145, 476, 499, 565, 710
TfiI GAWTC 2 cut(s) 125, 682
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 2 cut(s) 125, 467
TseI GCWGC 2 cut(s) 574, 610
TspDTI ATGAA 2 cut(s) 117, 165
TspRI CASTG 2 cut(s) 125, 467
VpaK11BI GGWCC 1 cut(s) 626
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 3 cut(s) 109, 476, 499
XceI RCATGY 4 cut(s) 104, 547, 653, 707
XspI CTAG 2 cut(s) 447, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.