Rmu_sc0000946.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000946.1
OG0000216
Physical Location & Seq
Reverse (-)
38319 .. 38834
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000946.1_g000007.1.cds

Sequence Viewer

Length: 516 bp
atgatatggatacgccacataagctgccacttaaggtgggctctaggtggttcacctaacattactccattactatgtgatattattgatcacaacaaattttgtttcatagaattaggagagtacgaggattttcaatttttgcatgtagaagtgtacaaagggtgcatgcggataatcgggtatgatagtgatacgcgtactctatctgttgtggacttgatcaatgatgaagaaatccatgaaggagttgtcaaattgtgtccggatcagatgagggtttattcactgaatgaagaaattattacaaaccatgatactgctgtgatctcaattataggtttcgacccagataatgatgatattttgtatctggaaagaattggagacattctgaagtgcaatattctgatattcatacaaggacatggtcgacggttgctaaaaggactcgaaatagtgatggcttgtacccgcttgctgttccatggtggccgacaccggttcccagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

171

Amino Acids

19.77

Weight (kDa)

5.27

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 433
AccII CGCG 1 cut(s) 199
AccIII TCCGGA 1 cut(s) 265
AciI CCGC 2 cut(s) 172, 475
AclWI GGATC 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 493
AcsI RAATTY 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 416
AfaI GTAC 4 cut(s) 125, 158, 202, 472
AflII CTTAAG 1 cut(s) 31
AflIII ACRYGT 1 cut(s) 197
AgeI ACCGGT 1 cut(s) 501
AgsI TTSAA 1 cut(s) 137
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw26I GTCTC 1 cut(s) 381
AlwI GGATC 1 cut(s) 276
Aor13HI TCCGGA 1 cut(s) 265
AoxI GGCC 1 cut(s) 493
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 98
AsiGI ACCGGT 1 cut(s) 501
AsuHPI GGTGA 1 cut(s) 45
BaeI ACNNNNGTAYC 2 cut(s) 309, 342
BanII GRGCYC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 11
BccI CCATC 1 cut(s) 457
BciVI GTATCC 1 cut(s) 3
BclI TGATCA 2 cut(s) 88, 222
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 2 cut(s) 44, 514
BfrI CTTAAG 1 cut(s) 31
BfuI GTATCC 1 cut(s) 3
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 487
BsaWI WCCGGW 2 cut(s) 265, 501
Bse118I RCCGGY 1 cut(s) 501
BseAI TCCGGA 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 487
BseXI GCAGC 1 cut(s) 11
Bsh1236I CGCG 1 cut(s) 199
BshFI GGCC 1 cut(s) 495
BshTI ACCGGT 1 cut(s) 501
BsiSI CCGG 2 cut(s) 266, 502
BsmAI GTCTC 1 cut(s) 381
BsnI GGCC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 43
Bsp13I TCCGGA 1 cut(s) 265
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 4 cut(s) 88, 222, 268, 327
Bsp19I CCATGG 1 cut(s) 487
BspACI CCGC 2 cut(s) 172, 475
BspANI GGCC 1 cut(s) 495
BspEI TCCGGA 1 cut(s) 265
BspFNI CGCG 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 506
BspPI GGATC 1 cut(s) 276
BspTI CTTAAG 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 501
BsrGI TGTACA 1 cut(s) 156
BssAI RCCGGY 1 cut(s) 501
BssECI CCNNGG 1 cut(s) 487
BssMI GATC 4 cut(s) 88, 222, 268, 327
BssT1I CCWWGG 1 cut(s) 487
Bst4CI ACNGT 1 cut(s) 438
BstAFI CTTAAG 1 cut(s) 31
BstAUI TGTACA 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 170, 479
BstDSI CCRYGG 1 cut(s) 487
BstFNI CGCG 1 cut(s) 199
BstKTI GATC 4 cut(s) 91, 225, 271, 330
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 4 cut(s) 88, 222, 268, 327
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNSI RCATGY 2 cut(s) 149, 172
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 11
BsuI GTATCC 1 cut(s) 3
BsuRI GGCC 1 cut(s) 495
BtgI CCRYGG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 287
Cac8I GCNNGC 2 cut(s) 170, 479
Cfr10I RCCGGY 1 cut(s) 501
Csp6I GTAC 4 cut(s) 124, 157, 201, 471
CspAI ACCGGT 1 cut(s) 501
CviAII CATG 6 cut(s) 146, 169, 242, 314, 428, 488
CviJI RGCY 4 cut(s) 24, 41, 467, 495
CviKI_1 RGCY 4 cut(s) 24, 41, 467, 495
CviQI GTAC 4 cut(s) 124, 157, 201, 471
DpnI GATC 4 cut(s) 90, 224, 270, 329
DpnII GATC 4 cut(s) 88, 222, 268, 327
EaeI YGGCCR 1 cut(s) 493
Eco130I CCWWGG 1 cut(s) 487
Eco24I GRGCYC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 487
FaeI CATG 6 cut(s) 149, 172, 245, 317, 431, 491
FatI CATG 6 cut(s) 145, 168, 241, 313, 427, 487
FauI CCCGC 1 cut(s) 482
FbaI TGATCA 2 cut(s) 88, 222
FblI GTMKAC 1 cut(s) 433
Fnu4HI GCNGC 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 2 cut(s) 44, 514
GluI GCNGC 1 cut(s) 25
HaeIII GGCC 1 cut(s) 495
HapII CCGG 2 cut(s) 266, 502
Hin1II CATG 6 cut(s) 149, 172, 245, 317, 431, 491
HincII GTYRAC 1 cut(s) 434
HindII GTYRAC 1 cut(s) 434
HinfI GANTC 1 cut(s) 450
HpaII CCGG 2 cut(s) 266, 502
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 4 cut(s) 53, 157, 217, 434
Hpy188I TCNGA 3 cut(s) 273, 396, 411
Hpy188III TCNNGA 2 cut(s) 266, 374
Hpy8I GTNNAC 4 cut(s) 53, 157, 217, 434
Hpy99I CGWCG 1 cut(s) 438
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 438
HpyCH4V TGCA 3 cut(s) 145, 168, 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
Hsp92II CATG 6 cut(s) 149, 172, 245, 317, 431, 491
Kpn2I TCCGGA 1 cut(s) 265
Ksp22I TGATCA 2 cut(s) 88, 222
Kzo9I GATC 4 cut(s) 88, 222, 268, 327
LpnPI CCDG 3 cut(s) 279, 359, 363
Lsp1109I GCAGC 1 cut(s) 11
MaeI CTAG 2 cut(s) 44, 514
MalI GATC 4 cut(s) 90, 224, 270, 329
MboI GATC 4 cut(s) 88, 222, 268, 327
MboII GAAGA 2 cut(s) 245, 308
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 7 cut(s) 98, 113, 137, 257, 300, 333, 381
MluI ACGCGT 1 cut(s) 197
MlyI GAGTC 1 cut(s) 444
MnlI CCTC 2 cut(s) 121, 270
MroI TCCGGA 1 cut(s) 265
MseI TTAA 1 cut(s) 32
MslI CAYNNNNRTG 1 cut(s) 73
MspCI CTTAAG 1 cut(s) 31
MspI CCGG 2 cut(s) 266, 502
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 21
NcoI CCATGG 1 cut(s) 487
NdeII GATC 4 cut(s) 88, 222, 268, 327
NlaIII CATG 6 cut(s) 149, 172, 245, 317, 431, 491
NlaIV GGNNCC 1 cut(s) 506
NspI RCATGY 2 cut(s) 149, 172
PaeI GCATGC 1 cut(s) 172
PflFI GACNNNGTC 1 cut(s) 429
PinAI ACCGGT 1 cut(s) 501
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 506
PsyI GACNNNGTC 1 cut(s) 429
RsaI GTAC 4 cut(s) 125, 158, 202, 472
RsaNI GTAC 4 cut(s) 124, 157, 201, 471
RseI CAYNNNNRTG 1 cut(s) 73
SalI GTCGAC 1 cut(s) 432
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 4 cut(s) 88, 222, 268, 327
SchI GAGTC 1 cut(s) 444
SduI GDGCHC 1 cut(s) 43
SetI ASST 5 cut(s) 26, 38, 49, 58, 343
SmiMI CAYNNNNRTG 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
SphI GCATGC 1 cut(s) 172
Sse9I AATT 7 cut(s) 98, 113, 137, 257, 300, 333, 381
SsiI CCGC 2 cut(s) 172, 475
SspI AATATT 1 cut(s) 406
SspMI CTAG 2 cut(s) 44, 514
StyI CCWWGG 1 cut(s) 487
TaaI ACNGT 1 cut(s) 438
TaqI TCGA 3 cut(s) 345, 433, 453
TasI AATT 7 cut(s) 98, 113, 137, 257, 300, 333, 381
TatI WGTACW 1 cut(s) 156
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 294
TseI GCWGC 1 cut(s) 24
TspDTI ATGAA 5 cut(s) 97, 246, 258, 309, 406
TspRI CASTG 1 cut(s) 294
Tth111I GACNNNGTC 1 cut(s) 429
Vha464I CTTAAG 1 cut(s) 31
XapI RAATTY 1 cut(s) 98
XceI RCATGY 2 cut(s) 149, 172
XmiI GTMKAC 1 cut(s) 433
XspI CTAG 2 cut(s) 44, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.