RNA polymerase II C-terminal domain phosphatase-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1113, 1311 |
| AarI | CACCTGC | 1 cut(s) | 767 |
| Acc16I | TGCGCA | 1 cut(s) | 649 |
| Acc36I | ACCTGC | 1 cut(s) | 767 |
| AccB1I | GGYRCC | 1 cut(s) | 620 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 414, 1437, 1580 |
| AccBSI | CCGCTC | 1 cut(s) | 1376 |
| AccI | GTMKAC | 4 cut(s) | 364, 732, 1320, 1496 |
| AccII | CGCG | 2 cut(s) | 669, 977 |
| AciI | CCGC | 8 cut(s) | 128, 184, 448, 824, 969, 977, 1041, 1376 |
| AclWI | GGATC | 5 cut(s) | 41, 428, 851, 1064, 1267 |
| AcoI | YGGCCR | 1 cut(s) | 1550 |
| AcsI | RAATTY | 1 cut(s) | 521 |
| AcuI | CTGAAG | 1 cut(s) | 71 |
| AcyI | GRCGYC | 1 cut(s) | 1183 |
| AdeI | CACNNNGTG | 1 cut(s) | 1580 |
| AfaI | GTAC | 4 cut(s) | 193, 1202, 1429, 1474 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 414, 939, 1437, 1580 |
| AgeI | ACCGGT | 1 cut(s) | 932 |
| AgsI | TTSAA | 5 cut(s) | 288, 353, 467, 571, 598 |
| AjnI | CCWGG | 2 cut(s) | 302, 1589 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 818, 850 |
| AluBI | AGCT | 4 cut(s) | 170, 400, 560, 817 |
| AluI | AGCT | 4 cut(s) | 170, 400, 560, 817 |
| Alw21I | GWGCWC | 1 cut(s) | 422 |
| Alw26I | GTCTC | 4 cut(s) | 923, 978, 1297, 1428 |
| Alw44I | GTGCAC | 1 cut(s) | 418 |
| AlwI | GGATC | 5 cut(s) | 41, 428, 851, 1064, 1267 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 497, 1437 |
| AoxI | GGCC | 6 cut(s) | 234, 240, 305, 551, 1550, 1592 |
| ApaLI | GTGCAC | 1 cut(s) | 418 |
| ApeKI | GCWGC | 4 cut(s) | 186, 215, 218, 645 |
| ApoI | RAATTY | 1 cut(s) | 521 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 188, 220 |
| AseI | ATTAAT | 1 cut(s) | 851 |
| AsiGI | ACCGGT | 1 cut(s) | 932 |
| AspLEI | GCGC | 3 cut(s) | 58, 650, 669 |
| AspS9I | GGNCC | 1 cut(s) | 552 |
| AsuHPI | GGTGA | 5 cut(s) | 254, 531, 748, 947, 1268 |
| BaeGI | GKGCMC | 1 cut(s) | 422 |
| BanI | GGYRCC | 1 cut(s) | 620 |
| BanII | GRGCYC | 1 cut(s) | 1590 |
| BauI | CACGAG | 1 cut(s) | 861 |
| Bbv12I | GWGCWC | 1 cut(s) | 422 |
| BbvI | GCAGC | 4 cut(s) | 198, 227, 230, 632 |
| BccI | CCATC | 4 cut(s) | 316, 550, 973, 980 |
| BciT130I | CCWGG | 2 cut(s) | 304, 1591 |
| BclI | TGATCA | 5 cut(s) | 114, 154, 250, 793, 1258 |
| BcoDI | GTCTC | 4 cut(s) | 923, 978, 1297, 1428 |
| BfaI | CTAG | 6 cut(s) | 60, 171, 549, 557, 1101, 1166 |
| BfuAI | ACCTGC | 1 cut(s) | 767 |
| BglII | AGATCT | 1 cut(s) | 915 |
| BisI | GCNGC | 4 cut(s) | 187, 216, 219, 646 |
| BlsI | GCNGC | 4 cut(s) | 188, 217, 220, 647 |
| BmcAI | AGTACT | 1 cut(s) | 1202 |
| Bme1390I | CCNGG | 2 cut(s) | 304, 1591 |
| BmgT120I | GGNCC | 1 cut(s) | 552 |
| BmiI | GGNNCC | 3 cut(s) | 554, 622, 708 |
| BmrFI | CCNGG | 2 cut(s) | 304, 1591 |
| BmsI | GCATC | 1 cut(s) | 594 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1182, 1559 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1190, 1222 |
| BpuEI | CTTGAG | 1 cut(s) | 711 |
| BsaHI | GRCGYC | 1 cut(s) | 1183 |
| BsaI | GGTCTC | 2 cut(s) | 923, 978 |
| BsaJI | CCNNGG | 5 cut(s) | 237, 589, 1276, 1544, 1589 |
| BsaWI | WCCGGW | 2 cut(s) | 932, 1148 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 818, 848 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 414, 939, 1437, 1580 |
| Bse118I | RCCGGY | 2 cut(s) | 232, 932 |
| Bse1I | ACTGG | 3 cut(s) | 700, 1442, 1559 |
| BseBI | CCWGG | 2 cut(s) | 304, 1591 |
| BseDI | CCNNGG | 5 cut(s) | 237, 589, 1276, 1544, 1589 |
| BseGI | GGATG | 8 cut(s) | 10, 542, 585, 810, 959, 965, 1197, 1336 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 414, 939, 1437, 1580 |
| BseMII | CTCAG | 2 cut(s) | 575, 1389 |
| BseNI | ACTGG | 3 cut(s) | 700, 1442, 1559 |
| BseRI | GAGGAG | 1 cut(s) | 1062 |
| BseSI | GKGCMC | 1 cut(s) | 422 |
| BseXI | GCAGC | 4 cut(s) | 198, 227, 230, 632 |
| BseYI | CCCAGC | 2 cut(s) | 211, 1036 |
| Bsh1236I | CGCG | 2 cut(s) | 669, 977 |
| Bsh1285I | CGRYCG | 1 cut(s) | 132 |
| BshFI | GGCC | 6 cut(s) | 236, 242, 307, 553, 1552, 1594 |
| BshNI | GGYRCC | 1 cut(s) | 620 |
| BshTI | ACCGGT | 1 cut(s) | 932 |
| BsiEI | CGRYCG | 1 cut(s) | 132 |
| BsiHKAI | GWGCWC | 1 cut(s) | 422 |
| BsiSI | CCGG | 3 cut(s) | 233, 933, 1149 |
| BslFI | GGGAC | 1 cut(s) | 818 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 414, 939, 1437, 1580 |
| BsmAI | GTCTC | 4 cut(s) | 923, 978, 1297, 1428 |
| BsmBI | CGTCTC | 1 cut(s) | 1297 |
| BsmFI | GGGAC | 1 cut(s) | 818 |
| BsnI | GGCC | 6 cut(s) | 236, 242, 307, 553, 1552, 1594 |
| Bso31I | GGTCTC | 2 cut(s) | 923, 978 |
| Bsp1286I | GDGCHC | 2 cut(s) | 422, 1590 |
| BspACI | CCGC | 8 cut(s) | 128, 184, 448, 824, 969, 977, 1041, 1376 |
| BspANI | GGCC | 6 cut(s) | 236, 242, 307, 553, 1552, 1594 |
| BspCNI | CTCAG | 2 cut(s) | 574, 1390 |
| BspFNI | CGCG | 2 cut(s) | 669, 977 |
| BspHI | TCATGA | 3 cut(s) | 151, 1077, 1269 |
| BspLI | GGNNCC | 3 cut(s) | 554, 622, 708 |
| BspMI | ACCTGC | 1 cut(s) | 767 |
| BspPI | GGATC | 5 cut(s) | 41, 428, 851, 1064, 1267 |
| BspT107I | GGYRCC | 1 cut(s) | 620 |
| BspTNI | GGTCTC | 2 cut(s) | 923, 978 |
| BsrBI | CCGCTC | 1 cut(s) | 1376 |
| BsrFI | RCCGGY | 2 cut(s) | 232, 932 |
| BsrI | ACTGG | 3 cut(s) | 700, 1442, 1559 |
| BssAI | RCCGGY | 2 cut(s) | 232, 932 |
| BssECI | CCNNGG | 5 cut(s) | 237, 589, 1276, 1544, 1589 |
| BssNAI | GTATAC | 1 cut(s) | 1321 |
| BssNI | GRCGYC | 1 cut(s) | 1183 |
| BssSI | CACGAG | 1 cut(s) | 861 |
| Bst1107I | GTATAC | 1 cut(s) | 1321 |
| Bst2BI | CACGAG | 1 cut(s) | 861 |
| Bst2UI | CCWGG | 2 cut(s) | 304, 1591 |
| Bst4CI | ACNGT | 8 cut(s) | 204, 593, 697, 737, 748, 1091, 1267, 1280 |
| Bst6I | CTCTTC | 1 cut(s) | 717 |
| BstACI | GRCGYC | 1 cut(s) | 1183 |
| BstC8I | GCNNGC | 4 cut(s) | 398, 652, 1288, 1586 |
| BstDEI | CTNAG | 5 cut(s) | 146, 527, 561, 634, 1398 |
| BstDSI | CCRYGG | 3 cut(s) | 589, 1276, 1544 |
| BstF5I | GGATG | 8 cut(s) | 10, 542, 585, 810, 959, 965, 1197, 1336 |
| BstFNI | CGCG | 2 cut(s) | 669, 977 |
| BstHHI | GCGC | 3 cut(s) | 58, 650, 669 |
| BstMAI | GTCTC | 4 cut(s) | 923, 978, 1297, 1428 |
| BstMCI | CGRYCG | 1 cut(s) | 132 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 651 |
| BstNI | CCWGG | 2 cut(s) | 304, 1591 |
| BstNSI | RCATGY | 1 cut(s) | 36 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1182, 1559 |
| BstSCI | CCNGG | 2 cut(s) | 302, 1589 |
| BstSLI | GKGCMC | 1 cut(s) | 422 |
| BstUI | CGCG | 2 cut(s) | 669, 977 |
| BstV1I | GCAGC | 4 cut(s) | 198, 227, 230, 632 |
| BstX2I | RGATCY | 2 cut(s) | 433, 915 |
| BstYI | RGATCY | 2 cut(s) | 433, 915 |
| BstZ17I | GTATAC | 1 cut(s) | 1321 |
| BsuRI | GGCC | 6 cut(s) | 236, 242, 307, 553, 1552, 1594 |
| BtgI | CCRYGG | 3 cut(s) | 589, 1276, 1544 |
| BtgZI | GCGATG | 1 cut(s) | 958 |
| BtsCI | GGATG | 8 cut(s) | 10, 542, 585, 810, 959, 965, 1197, 1336 |
| BtsIMutI | CAGTG | 4 cut(s) | 707, 1096, 1132, 1193 |
| BveI | ACCTGC | 1 cut(s) | 767 |
| Cac8I | GCNNGC | 4 cut(s) | 398, 652, 1288, 1586 |
| CaiI | CAGNNNCTG | 2 cut(s) | 497, 1437 |
| CciI | TCATGA | 3 cut(s) | 151, 1077, 1269 |
| CfoI | GCGC | 3 cut(s) | 58, 650, 669 |
| Cfr10I | RCCGGY | 2 cut(s) | 232, 932 |
| Cfr13I | GGNCC | 1 cut(s) | 552 |
| CseI | GACGC | 1 cut(s) | 1172 |
| Csp6I | GTAC | 4 cut(s) | 192, 1201, 1428, 1473 |
| CspAI | ACCGGT | 1 cut(s) | 932 |
| CviAII | CATG | 7 cut(s) | 33, 65, 124, 136, 152, 1078, 1270 |
| CviQI | GTAC | 4 cut(s) | 192, 1201, 1428, 1473 |
| DdeI | CTNAG | 5 cut(s) | 146, 527, 561, 634, 1398 |
| DraIII | CACNNNGTG | 1 cut(s) | 1580 |
| EaeI | YGGCCR | 1 cut(s) | 1550 |
| Eam1104I | CTCTTC | 1 cut(s) | 717 |
| EarI | CTCTTC | 1 cut(s) | 717 |
| EciI | GGCGGA | 2 cut(s) | 437, 958 |
| Eco24I | GRGCYC | 1 cut(s) | 1590 |
| Eco31I | GGTCTC | 2 cut(s) | 923, 978 |
| Eco57I | CTGAAG | 1 cut(s) | 71 |
| EcoO109I | RGGNCCY | 1 cut(s) | 552 |
| EcoRI | GAATTC | 1 cut(s) | 521 |
| EcoRII | CCWGG | 2 cut(s) | 302, 1589 |
| EcoT38I | GRGCYC | 1 cut(s) | 1590 |
| Esp3I | CGTCTC | 1 cut(s) | 1297 |
| FaeI | CATG | 7 cut(s) | 36, 68, 127, 139, 155, 1081, 1273 |
| FaqI | GGGAC | 1 cut(s) | 818 |
| FatI | CATG | 7 cut(s) | 32, 64, 123, 135, 151, 1077, 1269 |
| FauI | CCCGC | 1 cut(s) | 191 |
| FbaI | TGATCA | 5 cut(s) | 114, 154, 250, 793, 1258 |
| FblI | GTMKAC | 4 cut(s) | 364, 732, 1320, 1496 |
| Fnu4HI | GCNGC | 4 cut(s) | 187, 216, 219, 646 |
| FokI | GGATG | 8 cut(s) | 17, 529, 572, 797, 946, 952, 1204, 1343 |
| FriOI | GRGCYC | 1 cut(s) | 1590 |
| Fsp4HI | GCNGC | 4 cut(s) | 187, 216, 219, 646 |
| FspBI | CTAG | 6 cut(s) | 60, 171, 549, 557, 1101, 1166 |
| FspI | TGCGCA | 1 cut(s) | 649 |
| GlaI | GCGC | 3 cut(s) | 57, 649, 668 |
| GluI | GCNGC | 4 cut(s) | 187, 216, 219, 646 |
| GsaI | CCCAGC | 2 cut(s) | 215, 1040 |
| HaeIII | GGCC | 6 cut(s) | 236, 242, 307, 553, 1552, 1594 |
| HapII | CCGG | 3 cut(s) | 233, 933, 1149 |
| HgaI | GACGC | 1 cut(s) | 1172 |
| HhaI | GCGC | 3 cut(s) | 58, 650, 669 |
| Hin1I | GRCGYC | 1 cut(s) | 1183 |
| Hin1II | CATG | 7 cut(s) | 36, 68, 127, 139, 155, 1081, 1273 |
| Hin6I | GCGC | 3 cut(s) | 56, 648, 667 |
| HinP1I | GCGC | 3 cut(s) | 56, 648, 667 |
| HincII | GTYRAC | 1 cut(s) | 1568 |
| HindII | GTYRAC | 1 cut(s) | 1568 |
| HinfI | GANTC | 7 cut(s) | 95, 120, 338, 366, 472, 1145, 1160 |
| HpaII | CCGG | 3 cut(s) | 233, 933, 1149 |
| HphI | GGTGA | 5 cut(s) | 254, 531, 748, 947, 1268 |
| Hpy166II | GTNNAC | 7 cut(s) | 365, 420, 733, 756, 1321, 1497, 1568 |
| Hpy188I | TCNGA | 7 cut(s) | 114, 119, 247, 433, 928, 1263, 1506 |
| Hpy188III | TCNNGA | 4 cut(s) | 152, 315, 1078, 1270 |
| Hpy8I | GTNNAC | 7 cut(s) | 365, 420, 733, 756, 1321, 1497, 1568 |
| HpyAV | CCTTC | 1 cut(s) | 781 |
| HpyCH4III | ACNGT | 8 cut(s) | 204, 593, 697, 737, 748, 1091, 1267, 1280 |
| HpyCH4IV | ACGT | 4 cut(s) | 1172, 1306, 1452, 1579 |
| HpyCH4V | TGCA | 5 cut(s) | 396, 420, 684, 1464, 1522 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 651 |
| HpyF3I | CTNAG | 5 cut(s) | 146, 527, 561, 634, 1398 |
| HpySE526I | ACGT | 4 cut(s) | 1172, 1306, 1452, 1579 |
| Hsp92I | GRCGYC | 1 cut(s) | 1183 |
| Hsp92II | CATG | 7 cut(s) | 36, 68, 127, 139, 155, 1081, 1273 |
| HspAI | GCGC | 3 cut(s) | 56, 648, 667 |
| Ksp22I | TGATCA | 5 cut(s) | 114, 154, 250, 793, 1258 |
| LmnI | GCTCC | 1 cut(s) | 1283 |
| Lsp1109I | GCAGC | 4 cut(s) | 198, 227, 230, 632 |
| LweI | GCATC | 1 cut(s) | 594 |
| MaeI | CTAG | 6 cut(s) | 60, 171, 549, 557, 1101, 1166 |
| MaeII | ACGT | 4 cut(s) | 1172, 1306, 1452, 1579 |
| MaeIII | GTNAC | 2 cut(s) | 742, 1168 |
| MbiI | CCGCTC | 1 cut(s) | 1376 |
| MboII | GAAGA | 4 cut(s) | 704, 758, 910, 1346 |
| MfeI | CAATTG | 2 cut(s) | 51, 609 |
| MflI | RGATCY | 2 cut(s) | 433, 915 |
| MhlI | GDGCHC | 2 cut(s) | 422, 1590 |
| MluCI | AATT | 5 cut(s) | 27, 51, 521, 609, 852 |
| MlyI | GAGTC | 2 cut(s) | 347, 360 |
| MmeI | TCCRAC | 1 cut(s) | 1041 |
| MseI | TTAA | 4 cut(s) | 378, 819, 851, 1154 |
| MslI | CAYNNNNRTG | 1 cut(s) | 42 |
| MspI | CCGG | 3 cut(s) | 233, 933, 1149 |
| MspR9I | CCNGG | 2 cut(s) | 304, 1591 |
| MunI | CAATTG | 2 cut(s) | 51, 609 |
| MvaI | CCWGG | 2 cut(s) | 304, 1591 |
| MvnI | CGCG | 2 cut(s) | 669, 977 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 651 |
| NlaIII | CATG | 7 cut(s) | 36, 68, 127, 139, 155, 1081, 1273 |
| NlaIV | GGNNCC | 3 cut(s) | 554, 622, 708 |
| NmeAIII | GCCGAG | 1 cut(s) | 218 |
| NsbI | TGCGCA | 1 cut(s) | 649 |
| NspI | RCATGY | 1 cut(s) | 36 |
| PagI | TCATGA | 3 cut(s) | 151, 1077, 1269 |
| PaqCI | CACCTGC | 1 cut(s) | 767 |
| PfeI | GAWTC | 5 cut(s) | 95, 120, 472, 1145, 1160 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 414, 1437, 1580 |
| PinAI | ACCGGT | 1 cut(s) | 932 |
| PkrI | GCNGC | 4 cut(s) | 188, 217, 220, 647 |
| PleI | GAGTC | 2 cut(s) | 346, 360 |
| PpsI | GAGTC | 2 cut(s) | 346, 360 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1182, 1559 |
| PshBI | ATTAAT | 1 cut(s) | 851 |
| PsiI | TTATAA | 2 cut(s) | 1113, 1311 |
| Psp6I | CCWGG | 2 cut(s) | 302, 1589 |
| PspFI | CCCAGC | 2 cut(s) | 211, 1036 |
| PspGI | CCWGG | 2 cut(s) | 302, 1589 |
| PspN4I | GGNNCC | 3 cut(s) | 554, 622, 708 |
| PspPI | GGNCC | 1 cut(s) | 552 |
| PstNI | CAGNNNCTG | 2 cut(s) | 497, 1437 |
| PsuI | RGATCY | 2 cut(s) | 433, 915 |
| RsaI | GTAC | 4 cut(s) | 193, 1202, 1429, 1474 |
| RsaNI | GTAC | 4 cut(s) | 192, 1201, 1428, 1473 |
| RseI | CAYNNNNRTG | 1 cut(s) | 42 |
| SaqAI | TTAA | 4 cut(s) | 378, 819, 851, 1154 |
| SatI | GCNGC | 4 cut(s) | 187, 216, 219, 646 |
| Sau96I | GGNCC | 1 cut(s) | 552 |
| ScaI | AGTACT | 1 cut(s) | 1202 |
| SchI | GAGTC | 2 cut(s) | 347, 360 |
| ScrFI | CCNGG | 2 cut(s) | 304, 1591 |
| SduI | GDGCHC | 2 cut(s) | 422, 1590 |
| SfaNI | GCATC | 1 cut(s) | 594 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 42 |
| SmlI | CTYRAG | 1 cut(s) | 726 |
| SmoI | CTYRAG | 1 cut(s) | 726 |
| Sse9I | AATT | 5 cut(s) | 27, 51, 521, 609, 852 |
| SsiI | CCGC | 8 cut(s) | 128, 184, 448, 824, 969, 977, 1041, 1376 |
| SspI | AATATT | 2 cut(s) | 282, 322 |
| SspMI | CTAG | 6 cut(s) | 60, 171, 549, 557, 1101, 1166 |
| StyD4I | CCNGG | 2 cut(s) | 302, 1589 |
| TaaI | ACNGT | 8 cut(s) | 204, 593, 697, 737, 748, 1091, 1267, 1280 |
| TaiI | ACGT | 4 cut(s) | 1175, 1309, 1455, 1582 |
| TaqI | TCGA | 4 cut(s) | 93, 906, 1083, 1386 |
| TasI | AATT | 5 cut(s) | 27, 51, 521, 609, 852 |
| TatI | WGTACW | 2 cut(s) | 191, 1200 |
| TfiI | GAWTC | 5 cut(s) | 95, 120, 472, 1145, 1160 |
| Tru1I | TTAA | 4 cut(s) | 378, 819, 851, 1154 |
| Tru9I | TTAA | 4 cut(s) | 378, 819, 851, 1154 |
| TscAI | CASTG | 4 cut(s) | 707, 1096, 1132, 1193 |
| TseI | GCWGC | 4 cut(s) | 186, 215, 218, 645 |
| TspDTI | ATGAA | 6 cut(s) | 98, 112, 248, 1066, 1257, 1347 |
| TspGWI | ACGGA | 4 cut(s) | 373, 1062, 1533, 1553 |
| TspRI | CASTG | 4 cut(s) | 707, 1096, 1132, 1193 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 414, 1437, 1580 |
| VneI | GTGCAC | 1 cut(s) | 418 |
| VspI | ATTAAT | 1 cut(s) | 851 |
| XapI | RAATTY | 1 cut(s) | 521 |
| XceI | RCATGY | 1 cut(s) | 36 |
| XmiI | GTMKAC | 4 cut(s) | 364, 732, 1320, 1496 |
| XspI | CTAG | 6 cut(s) | 60, 171, 549, 557, 1101, 1166 |
| ZrmI | AGTACT | 1 cut(s) | 1202 |