Rh2AG577700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000216
Physical Location & Seq
Forward (+)
80731324 .. 80731695
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG577700.1

Sequence Viewer

Length: 372 bp
ATGCATGTAGAAGTGTACAAAGGGTGCATGCGGATAATCGGGTATGATAGTGATACGCGTACTCTATCTGTTGTGGACTTGATCAATGATGAAGAAATCCATGAAGGAGTTGTCAAATTGTGTCCGGATCAGATGAGGGTTTATTCACTGAATGAAGAAATTATTACAAACCATGATACTGCTGTGATCTCAATTATAGGTTTCGACCCAGATAATGATGATATTTTGTATCTGGAAAGAATTGGAGACATTCTTAAGTGCAATATTCATACAAGGACATGGTCGACGGTTGCTAAAGGGACTCGAAATAGTGATGGCTTGTACCCGCATGCTGTTCCATGGTGGCCGACACCGGTTCCCAGACTAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

123

Amino Acids

14.01

Weight (kDa)

4.9

Isoelectric Point (pI)

31.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 284
AccII CGCG 1 cut(s) 58
AccIII TCCGGA 1 cut(s) 124
AciI CCGC 2 cut(s) 31, 326
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 344
AfaI GTAC 3 cut(s) 17, 61, 323
AflII CTTAAG 1 cut(s) 254
AflIII ACRYGT 1 cut(s) 56
AgeI ACCGGT 1 cut(s) 352
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 1 cut(s) 135
Aor13HI TCCGGA 1 cut(s) 124
AoxI GGCC 1 cut(s) 344
AsiGI ACCGGT 1 cut(s) 352
BaeI ACNNNNGTAYC 2 cut(s) 168, 201
BccI CCATC 1 cut(s) 308
BclI TGATCA 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 365
BfrI CTTAAG 1 cut(s) 254
BmiI GGNNCC 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 338
BsaWI WCCGGW 2 cut(s) 124, 352
Bse118I RCCGGY 1 cut(s) 352
BseAI TCCGGA 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 58
BshFI GGCC 1 cut(s) 346
BshTI ACCGGT 1 cut(s) 352
BsiSI CCGG 2 cut(s) 125, 353
BslFI GGGAC 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 1 cut(s) 346
Bsp13I TCCGGA 1 cut(s) 124
Bsp1407I TGTACA 1 cut(s) 15
Bsp143I GATC 3 cut(s) 81, 127, 186
Bsp19I CCATGG 1 cut(s) 338
BspACI CCGC 2 cut(s) 31, 326
BspANI GGCC 1 cut(s) 346
BspEI TCCGGA 1 cut(s) 124
BspFNI CGCG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 357
BspPI GGATC 1 cut(s) 135
BspTI CTTAAG 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 352
BsrGI TGTACA 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 3 cut(s) 81, 127, 186
BssT1I CCWWGG 1 cut(s) 338
Bst4CI ACNGT 1 cut(s) 289
BstAFI CTTAAG 1 cut(s) 254
BstAUI TGTACA 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 29, 330
BstDSI CCRYGG 1 cut(s) 338
BstFNI CGCG 1 cut(s) 58
BstKTI GATC 3 cut(s) 84, 130, 189
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 3 cut(s) 81, 127, 186
BstNSI RCATGY 3 cut(s) 8, 31, 332
BstUI CGCG 1 cut(s) 58
BsuRI GGCC 1 cut(s) 346
BtgI CCRYGG 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 146
Cac8I GCNNGC 2 cut(s) 29, 330
Cfr10I RCCGGY 1 cut(s) 352
Csp6I GTAC 3 cut(s) 16, 60, 322
CspAI ACCGGT 1 cut(s) 352
CviAII CATG 7 cut(s) 5, 28, 101, 173, 279, 329, 339
CviJI RGCY 2 cut(s) 318, 346
CviKI_1 RGCY 2 cut(s) 318, 346
CviQI GTAC 3 cut(s) 16, 60, 322
DpnI GATC 3 cut(s) 83, 129, 188
DpnII GATC 3 cut(s) 81, 127, 186
EaeI YGGCCR 1 cut(s) 344
Eco130I CCWWGG 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 338
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 7 cut(s) 8, 31, 104, 176, 282, 332, 342
FaqI GGGAC 1 cut(s) 313
FatI CATG 7 cut(s) 4, 27, 100, 172, 278, 328, 338
FauI CCCGC 1 cut(s) 333
FbaI TGATCA 1 cut(s) 81
FblI GTMKAC 1 cut(s) 284
FspBI CTAG 1 cut(s) 365
HaeIII GGCC 1 cut(s) 346
HapII CCGG 2 cut(s) 125, 353
Hin1II CATG 7 cut(s) 8, 31, 104, 176, 282, 332, 342
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 1 cut(s) 301
HpaII CCGG 2 cut(s) 125, 353
Hpy166II GTNNAC 3 cut(s) 16, 76, 285
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 125, 233
Hpy8I GTNNAC 3 cut(s) 16, 76, 285
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 3 cut(s) 4, 27, 261
Hsp92II CATG 7 cut(s) 8, 31, 104, 176, 282, 332, 342
Kpn2I TCCGGA 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 3 cut(s) 81, 127, 186
LpnPI CCDG 4 cut(s) 138, 218, 222, 366
MaeI CTAG 1 cut(s) 365
MalI GATC 3 cut(s) 83, 129, 188
MboI GATC 3 cut(s) 81, 127, 186
MboII GAAGA 2 cut(s) 104, 167
MluCI AATT 4 cut(s) 116, 159, 192, 240
MluI ACGCGT 1 cut(s) 56
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 1 cut(s) 129
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 124
MseI TTAA 1 cut(s) 255
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 2 cut(s) 125, 353
MvnI CGCG 1 cut(s) 58
NcoI CCATGG 1 cut(s) 338
NdeII GATC 3 cut(s) 81, 127, 186
NlaIII CATG 7 cut(s) 8, 31, 104, 176, 282, 332, 342
NlaIV GGNNCC 1 cut(s) 357
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 8, 31, 332
PaeI GCATGC 2 cut(s) 31, 332
PflFI GACNNNGTC 1 cut(s) 280
PinAI ACCGGT 1 cut(s) 352
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 357
PsyI GACNNNGTC 1 cut(s) 280
RsaI GTAC 3 cut(s) 17, 61, 323
RsaNI GTAC 3 cut(s) 16, 60, 322
SalI GTCGAC 1 cut(s) 283
SaqAI TTAA 1 cut(s) 255
Sau3AI GATC 3 cut(s) 81, 127, 186
SchI GAGTC 1 cut(s) 295
SetI ASST 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
SphI GCATGC 2 cut(s) 31, 332
Sse9I AATT 4 cut(s) 116, 159, 192, 240
SsiI CCGC 2 cut(s) 31, 326
SspI AATATT 1 cut(s) 265
SspMI CTAG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 3 cut(s) 204, 284, 304
TasI AATT 4 cut(s) 116, 159, 192, 240
TatI WGTACW 1 cut(s) 15
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 153
TspDTI ATGAA 4 cut(s) 105, 117, 168, 257
TspRI CASTG 1 cut(s) 153
Tth111I GACNNNGTC 1 cut(s) 280
Vha464I CTTAAG 1 cut(s) 254
XceI RCATGY 3 cut(s) 8, 31, 332
XmiI GTMKAC 1 cut(s) 284
XspI CTAG 1 cut(s) 365
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.