Rmu_sc0003200.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003200.1
OG0000216
Physical Location & Seq
Reverse (-)
8603 .. 10457
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003200.1_g000004.1.cds

Sequence Viewer

Length: 1293 bp
atgagaggtatggacggcacttctgctagaaagagaagaaacaggagtttatcccccctggcctctaatcctattcatcacttgaaaacatcaaaaacttcatcatcaagttcagcagcatcaagaagaccaccatcaaaactggtgactgctaatattgaaaatcttcccgaacatgttttggttgaaattctctgtcgacttccttgctataaattcgtctctcaatgcaagtctgtgtccaaacgttggtgcactctcatgtcaaatccttctttcattggccgcttcctgtgcctgcaaatggaaaggccaataatacgtaccatgataaacgctgaaggggtggaattccttaacaagacttcatcattgtccaagccactaactcctttgttcagaagactgatgagtatctacagtttggagaaagagccaattgtggttggtacatataatgacttggttctctgctgtgcatccaagtatgaacaatatgattactacatctgcaatccatgcacaatccaatgggctgaacttccacccccgcctcgagtatacgagtacacacctgtgggattcatctgcgatctgccctactataatgataagacagaatcaattgtatccactccatctgcccgttggtttgagtccattgatcacagctttagctttgcttgcaacggaatgttgtattggatgagtcgtcgtcaaaatttttttatttttgggttggatccgttcatggtcaacaatagtgacaatagtactagcactattactaatggcaataatactattgatcactataaacgtcgtttgattgaatttgatggctgtggttgtgaaatacttcggtgcgtaggagtccatagagggtgtttacgcatgtccgagtacgagtttgtcagccgtgctgtatttgttgcggatcttattgtaggagaacaaggtggttggatggtcaagtgtcatggaggaacttccagattatgtataaaagacatggtgaggatttattcactggatgaagaaaaaatggatttgcagattgatgaagaaaatttgtgtatattgctagcttttgacccagacgatgatgatatcttttatctgcgggtagatgaggacattttcatgtgcaacatttttacaagtgaatggtcaaagatagcagaaaagagtccaattgatagtcctttcttctacccatttgtgctcccatggtggccaacaccagttcctagactaccgcaacatgcacaaccaagcggggacaacctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

430

Amino Acids

49.37

Weight (kDa)

6.28

Isoelectric Point (pI)

63.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 249
AccI GTMKAC 2 cut(s) 199, 561
AciI CCGC 6 cut(s) 286, 551, 935, 1123, 1259, 1278
AclI AACGTT 1 cut(s) 247
AclWI GGATC 3 cut(s) 737, 750, 945
AcoI YGGCCR 2 cut(s) 283, 1235
AcsI RAATTY 6 cut(s) 189, 215, 350, 721, 833, 1069
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 5 cut(s) 325, 451, 569, 775, 905
AfiI CCNNNNNNNGG 2 cut(s) 249, 304
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 4 cut(s) 85, 161, 188, 833
AjnI CCWGG 1 cut(s) 57
AjuI GAANNNNNNNTTGG 2 cut(s) 685, 717
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 3 cut(s) 672, 678, 1088
AluI AGCT 3 cut(s) 672, 678, 1088
Alw21I GWGCWC 2 cut(s) 257, 1227
Alw26I GTCTC 1 cut(s) 226
Alw44I GTGCAC 1 cut(s) 253
AlwI GGATC 3 cut(s) 737, 750, 945
Ama87I CYCGRG 1 cut(s) 555
AoxI GGCC 4 cut(s) 60, 283, 311, 1235
ApaLI GTGCAC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 6 cut(s) 189, 215, 350, 721, 833, 1069
Asp700I GAANNNNTTC 2 cut(s) 165, 858
AsuHPI GGTGA 2 cut(s) 157, 1027
AsuNHI GCTAGC 1 cut(s) 1084
AvaI CYCGRG 1 cut(s) 555
BaeGI GKGCMC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 1237
BamHI GGATCC 1 cut(s) 742
BbsI GAAGAC 2 cut(s) 133, 409
Bbv12I GWGCWC 2 cut(s) 257, 1227
BbvI GCAGC 1 cut(s) 128
BccI CCATC 4 cut(s) 142, 646, 833, 961
BceAI ACGGC 2 cut(s) 31, 903
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BciT130I CCWGG 1 cut(s) 59
BciVI GTATCC 1 cut(s) 640
BclI TGATCA 2 cut(s) 664, 808
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 4 cut(s) 27, 777, 1085, 1251
BfmI CTRYAG 1 cut(s) 418
BfuI GTATCC 1 cut(s) 640
BisI GCNGC 2 cut(s) 117, 286
BlsI GCNGC 2 cut(s) 118, 287
BmcAI AGTACT 1 cut(s) 775
Bme1390I CCNGG 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 555
BmiI GGNNCC 1 cut(s) 744
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 2 cut(s) 128, 488
BmtI GCTAGC 1 cut(s) 1088
BpiI GAAGAC 2 cut(s) 133, 409
BsaAI YACGTR 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 413
BsaJI CCNNGG 2 cut(s) 57, 1229
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 304
Bse1I ACTGG 3 cut(s) 147, 1035, 1244
Bse8I GATNNNNATC 1 cut(s) 413
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 2 cut(s) 57, 1229
BseGI GGATG 4 cut(s) 479, 711, 972, 1039
BseJI GATNNNNATC 1 cut(s) 413
BseLI CCNNNNNNNGG 2 cut(s) 249, 304
BseNI ACTGG 3 cut(s) 147, 1035, 1244
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 1 cut(s) 128
BshFI GGCC 4 cut(s) 62, 285, 313, 1237
BsiHKAI GWGCWC 2 cut(s) 257, 1227
BsiHKCI CYCGRG 1 cut(s) 555
BslI CCNNNNNNNGG 2 cut(s) 249, 304
BsmAI GTCTC 1 cut(s) 226
BsmBI CGTCTC 1 cut(s) 226
BsnI GGCC 4 cut(s) 62, 285, 313, 1237
BsoBI CYCGRG 1 cut(s) 555
Bsp1286I GDGCHC 2 cut(s) 257, 1227
Bsp143I GATC 5 cut(s) 592, 664, 742, 808, 937
Bsp19I CCATGG 1 cut(s) 1229
BspACI CCGC 6 cut(s) 286, 551, 935, 1123, 1259, 1278
BspANI GGCC 4 cut(s) 62, 285, 313, 1237
BspLI GGNNCC 1 cut(s) 744
BspOI GCTAGC 1 cut(s) 1088
BspPI GGATC 3 cut(s) 737, 750, 945
BsrI ACTGG 3 cut(s) 147, 1035, 1244
BssECI CCNNGG 2 cut(s) 57, 1229
BssMI GATC 5 cut(s) 592, 664, 742, 808, 937
BssNAI GTATAC 1 cut(s) 562
BssT1I CCWWGG 1 cut(s) 1229
Bst1107I GTATAC 1 cut(s) 562
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 422
BstAPI GCANNNNNTGC 1 cut(s) 519
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 3 cut(s) 299, 685, 1086
BstDSI CCRYGG 1 cut(s) 1229
BstF5I GGATG 4 cut(s) 479, 711, 972, 1039
BstKTI GATC 5 cut(s) 595, 667, 745, 811, 940
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 5 cut(s) 592, 664, 742, 808, 937
BstMWI GCNNNNNNNGC 3 cut(s) 294, 519, 684
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 3 cut(s) 179, 898, 1268
BstSCI CCNGG 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 257
BstSNI TACGTA 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 128
BstV2I GAAGAC 2 cut(s) 133, 409
BstX2I RGATCY 2 cut(s) 742, 937
BstYI RGATCY 2 cut(s) 742, 937
BstZ17I GTATAC 1 cut(s) 562
BsuI GTATCC 1 cut(s) 640
BsuRI GGCC 4 cut(s) 62, 285, 313, 1237
BtgI CCRYGG 1 cut(s) 1229
BtsCI GGATG 4 cut(s) 479, 711, 972, 1039
BtsIMutI CAGTG 1 cut(s) 1028
Cac8I GCNNGC 3 cut(s) 299, 685, 1086
Csp6I GTAC 5 cut(s) 324, 450, 568, 774, 904
CviQI GTAC 5 cut(s) 324, 450, 568, 774, 904
DpnI GATC 5 cut(s) 594, 666, 744, 810, 939
DpnII GATC 5 cut(s) 592, 664, 742, 808, 937
EaeI YGGCCR 2 cut(s) 283, 1235
Eco105I TACGTA 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 1229
Eco32I GATATC 1 cut(s) 1111
Eco57I CTGAAG 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 57
EcoRV GATATC 1 cut(s) 1111
EcoT14I CCWWGG 1 cut(s) 1229
ErhI CCWWGG 1 cut(s) 1229
Esp3I CGTCTC 1 cut(s) 226
FauI CCCGC 3 cut(s) 558, 1116, 1271
FbaI TGATCA 2 cut(s) 664, 808
FblI GTMKAC 2 cut(s) 199, 561
Fnu4HI GCNGC 2 cut(s) 117, 286
FokI GGATG 4 cut(s) 466, 718, 979, 1046
Fsp4HI GCNGC 2 cut(s) 117, 286
FspBI CTAG 4 cut(s) 27, 777, 1085, 1251
GluI GCNGC 2 cut(s) 117, 286
HaeIII GGCC 4 cut(s) 62, 285, 313, 1237
HincII GTYRAC 2 cut(s) 200, 757
HindII GTYRAC 2 cut(s) 200, 757
HinfI GANTC 6 cut(s) 582, 620, 656, 709, 873, 1189
HphI GGTGA 2 cut(s) 157, 1027
Hpy166II GTNNAC 6 cut(s) 200, 255, 562, 570, 757, 890
Hpy188I TCNGA 2 cut(s) 401, 901
Hpy188III TCNNGA 3 cut(s) 123, 170, 993
Hpy8I GTNNAC 6 cut(s) 200, 255, 562, 570, 757, 890
Hpy99I CGWCG 2 cut(s) 717, 825
HpyAV CCTTC 2 cut(s) 282, 335
HpyCH4III ACNGT 1 cut(s) 422
HpyCH4IV ACGT 3 cut(s) 247, 322, 820
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 519, 684
HpySE526I ACGT 3 cut(s) 247, 322, 820
Ksp22I TGATCA 2 cut(s) 664, 808
Kzo9I GATC 5 cut(s) 592, 664, 742, 808, 937
LmnI GCTCC 1 cut(s) 1230
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 2 cut(s) 128, 488
MaeI CTAG 4 cut(s) 27, 777, 1085, 1251
MaeII ACGT 3 cut(s) 247, 322, 820
MaeIII GTNAC 2 cut(s) 145, 764
MalI GATC 5 cut(s) 594, 666, 744, 810, 939
MboI GATC 5 cut(s) 592, 664, 742, 808, 937
MboII GAAGA 7 cut(s) 48, 138, 158, 414, 1049, 1076, 1201
MfeI CAATTG 3 cut(s) 438, 624, 1194
MflI RGATCY 2 cut(s) 742, 937
MhlI GDGCHC 2 cut(s) 257, 1227
MlsI TGGCCA 1 cut(s) 1237
MluCI AATT 9 cut(s) 189, 215, 350, 438, 624, 721, 833, 1069, 1194
MluNI TGGCCA 1 cut(s) 1237
MlyI GAGTC 4 cut(s) 665, 718, 882, 1198
MmeI TCCRAC 2 cut(s) 720, 944
MnlI CCTC 6 cut(s) 73, 564, 875, 977, 1011, 1126
Mox20I TGGCCA 1 cut(s) 1237
MroXI GAANNNNTTC 2 cut(s) 165, 858
MscI TGGCCA 1 cut(s) 1237
MseI TTAA 1 cut(s) 357
MslI CAYNNNNRTG 3 cut(s) 260, 575, 1142
Msp20I TGGCCA 1 cut(s) 1237
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 3 cut(s) 438, 624, 1194
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 294, 519, 684
NcoI CCATGG 1 cut(s) 1229
NdeII GATC 5 cut(s) 592, 664, 742, 808, 937
NheI GCTAGC 1 cut(s) 1084
NlaIV GGNNCC 1 cut(s) 744
NmuCI GTSAC 2 cut(s) 145, 764
NspI RCATGY 3 cut(s) 179, 898, 1268
OliI CACNNNNGTG 1 cut(s) 575
PaeR7I CTCGAG 1 cut(s) 555
PciI ACATGT 1 cut(s) 175
PdmI GAANNNNTTC 2 cut(s) 165, 858
PfeI GAWTC 2 cut(s) 582, 620
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 2 cut(s) 118, 287
PleI GAGTC 4 cut(s) 664, 717, 881, 1197
PpsI GAGTC 4 cut(s) 664, 717, 881, 1197
Ppu21I YACGTR 1 cut(s) 323
PscI ACATGT 1 cut(s) 175
Psp1406I AACGTT 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 744
PspXI VCTCGAGB 1 cut(s) 555
PsuI RGATCY 2 cut(s) 742, 937
RsaI GTAC 5 cut(s) 325, 451, 569, 775, 905
RsaNI GTAC 5 cut(s) 324, 450, 568, 774, 904
RseI CAYNNNNRTG 3 cut(s) 260, 575, 1142
SalI GTCGAC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 2 cut(s) 117, 286
Sau3AI GATC 5 cut(s) 592, 664, 742, 808, 937
ScaI AGTACT 1 cut(s) 775
SchI GAGTC 4 cut(s) 665, 718, 882, 1198
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 2 cut(s) 257, 1227
SfaNI GCATC 2 cut(s) 128, 488
SfcI CTRYAG 1 cut(s) 418
Sfr274I CTCGAG 1 cut(s) 555
SlaI CTCGAG 1 cut(s) 555
SmiMI CAYNNNNRTG 3 cut(s) 260, 575, 1142
SmlI CTYRAG 1 cut(s) 555
SmoI CTYRAG 1 cut(s) 555
SnaBI TACGTA 1 cut(s) 323
Sse9I AATT 9 cut(s) 189, 215, 350, 438, 624, 721, 833, 1069, 1194
SsiI CCGC 6 cut(s) 286, 551, 935, 1123, 1259, 1278
SspI AATATT 1 cut(s) 157
SspMI CTAG 4 cut(s) 27, 777, 1085, 1251
StyD4I CCNGG 1 cut(s) 57
StyI CCWWGG 1 cut(s) 1229
TaaI ACNGT 1 cut(s) 422
TaiI ACGT 3 cut(s) 250, 325, 823
TaqI TCGA 2 cut(s) 199, 556
TasI AATT 9 cut(s) 189, 215, 350, 438, 624, 721, 833, 1069, 1194
TatI WGTACW 2 cut(s) 567, 773
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 2 cut(s) 582, 620
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 1035
TseFI GTSAC 2 cut(s) 145, 764
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 2 cut(s) 145, 764
TspGWI ACGGA 2 cut(s) 705, 735
TspRI CASTG 1 cut(s) 1035
Van91I CCANNNNNTGG 1 cut(s) 249
VneI GTGCAC 1 cut(s) 253
XapI RAATTY 6 cut(s) 189, 215, 350, 721, 833, 1069
XceI RCATGY 3 cut(s) 179, 898, 1268
XcmI CCANNNNNNNNNTGG 1 cut(s) 645
XhoI CTCGAG 1 cut(s) 555
XmiI GTMKAC 2 cut(s) 199, 561
XmnI GAANNNNTTC 2 cut(s) 165, 858
XspI CTAG 4 cut(s) 27, 777, 1085, 1251
ZrmI AGTACT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.