Rorug02G0509700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000216
Physical Location & Seq
Forward (+)
64039746 .. 64043752
4007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0509700.1

Sequence Viewer

Length: 2004 bp
ATGTTGATTCTTCAGAGAATGGCCACCTCCTCTTCTCTCCTCTCATCCCCTCTCCTAAAGATCTCTTCTTTTCCCACCCGTTTCCTCTCCCCTCTTAAACGCTGCGTTTCGCAACCCACCACCACCGAGTTCAGGGCCTTGGCCCTTTACAGAAATGGAGTCTCCACCTCCGCCGCCGCTGTGGCCACCACAGAGTCTCAGGTTTCGACCCAACACGACAAATTGAAGGAGAAGACTGATAAGCTTGACAAACTTGTGCTTCCTTCCAATGAGTCCTCTGAGAAACTCCTCAGAATTCGCCACACGTGTGCGCATGTTATGGCCATGGCTGTTCAGAAGCTCTTCCCAGATGCGAAAGTGACAATTGGGCCGTGGATAGAGAATGGGTTTTATTATGATTTTGATATGGAGCCTTTGACAGACAAAGAGTTGAAGAGAATCAAGAAGGAGATGGATCGCATCATTGGTAGAAATTTACCACTTGTAAGAGAAGAAGTTTCAAGAGAGGAAGCTCAGCGAAGAATAAGTGCTCTCAACGAACCATACAAACTTGAAATTTTGGATGGTATTAAGGAAGATCCCATTACCATCTACCACATTGGTAATGAATGGTGGGATCTATGTGCGGGGCCTCATGTGGAATATACTGGAAAAATTAACAGAAAAGCTGTCGAACTTGAGTCTATTGCTGGTGCTTACTGGAGAGGTGATGAAAAGAAACCGATGTTGCAGAGGATCTATGGCACTGCATGGGAGAACGAAGAACAATTGCAGGCATACCTTCATTTCAAGGAGGAGGCTAAACGCCGAGATCACAGGCGCCTTGGTCAAGTTCTTGATCTGTTTTCTATACAGAATGATGCTGGCGGGGGTTTAGTGTTCTGGCATCCAAAGGGTGCTATTGTGAGGAATGTAATAGAAGATTTGTGGAAAAAGACACACATAGAGCGTGGTTATGATCTGCTATATACTCCACATGTTGCAAAGGCAGATCTTTGGCAGATAAGTGGTCATCTGGATTATTACAGAGAGAATATGTACAATCAGATGGATGTTGAAGATGAACTTTATCAACTTCGACCAATGAACTGCCCTTATCATATCTTGATTTACAAAAGGAGGCGTCACTCTTATAATGACTTTCCTATTAGAGTTGCTGAGTTGGGAACTGTATATAGATATGAATTATCTGGAAGCTTACATGGCCTTTTCCGTGTAAGAGGTTTTACTCAGGATGATGCACACATATTTTGTCTAGAAGATCAGATCAAAGATGAAATCAGGGGTGTTCTAGATCTTACGGAAGAGTTATTATTGAAATTTGGCTTCAGCAAATATGAAGTTAATCTCTCGACGAGGCCAGAGAAGTCTGTTGGAGACGATGATATATGGGTGAAAGCAACATCTGCCCTTAGAGATGCCTTGGAGGATAAGGGTTGGAGCTATCAAATTGATGATGGCGGTGGTGCTTTTTATGGCCCAAAGATTGATCTTAAGATTGAGGATGCTCTTGGAAGGAAGTGGCAGTGCTCAACTATACAGGTTGACTTTAACCTACCACAGCGATTTGACATAACATATGTTGACTCAAATTCGGAAAAGAAGCGGCCTATCATGATTCATAGAGCTGTTCTTGGGTCCTTGGAGAGGTTCTTTGGAGTCCTTATAGAGCATTATGCTGGGGATTTTCCATTATGGCTTTCTCCAGTGCAAGCTCATGTTTTACCAGTGACAGACACTCAGCTCGATTACTGCAAAGAGCTGACCAACAAACTGAAAGCAAATGGTATTCGGGGTGAACTTTGCCACGGCGAACGACTGCCAAAACTGATTAGGAATTCAGAGATGCTCAAAATTCCATTAATGGCTGTTGTTGGTGCCAAGGAAGTTGAATCTGGAACTGTTACAGTAAGATCCAGGTCTGGTGAGGATCCTGGGACCATGACGATTGACGATTTTGTCAGCAGAATCAAGTTAACCATTGAAAGCAGAACATCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

667

Amino Acids

76.73

Weight (kDa)

6.47

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_SAD PF07973 195 - 247 2.7e-12 Threonyl and Alanyl tRNA synthetase second additional domain
tRNA-synt_2b PF00587 352 - 559 1.4e-49 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon PF03129 571 - 658 3.6e-18 Anticodon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1134
AasI GACNNNNNNGTC 1 cut(s) 1958
Acc16I TGCGCA 1 cut(s) 312
AccB1I GGYRCC 2 cut(s) 819, 1877
AciI CCGC 7 cut(s) 171, 174, 177, 626, 867, 1461, 1606
AclWI GGATC 7 cut(s) 462, 572, 624, 743, 1908, 1925, 1938
AcoI YGGCCR 3 cut(s) 21, 183, 321
AcsI RAATTY 7 cut(s) 294, 472, 555, 1319, 1591, 1837, 1854
AcuI CTGAAG 1 cut(s) 1312
AcvI CACGTG 1 cut(s) 306
AcyI GRCGYC 2 cut(s) 820, 1123
AfaI GTAC 1 cut(s) 1040
AfiI CCNNNNNNNGG 2 cut(s) 132, 1647
AflII CTTAAG 1 cut(s) 1493
AflIII ACRYGT 3 cut(s) 303, 305, 976
AgsI TTSAA 9 cut(s) 226, 433, 501, 554, 790, 1058, 1318, 1892, 1985
AjnI CCWGG 2 cut(s) 1916, 1933
AleI CACNNNNGTG 1 cut(s) 306
Alw21I GWGCWC 2 cut(s) 532, 1532
Alw26I GTCTC 3 cut(s) 166, 201, 1371
AlwI GGATC 7 cut(s) 462, 572, 624, 743, 1908, 1925, 1938
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 7 cut(s) 294, 472, 555, 1319, 1591, 1837, 1854
AseI ATTAAT 1 cut(s) 1862
Asp700I GAANNNNTTC 1 cut(s) 341
AspLEI GCGC 2 cut(s) 313, 822
AspS9I GGNCC 7 cut(s) 135, 142, 368, 629, 1478, 1638, 1938
AsuHPI GGTGA 4 cut(s) 719, 1405, 1808, 1937
AvaII GGWCC 2 cut(s) 1638, 1938
BalI TGGCCA 3 cut(s) 23, 185, 323
BamHI GGATCC 1 cut(s) 1930
BanI GGYRCC 2 cut(s) 819, 1877
BbrPI CACGTG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 2 cut(s) 532, 1532
BbvI GCAGC 1 cut(s) 89
BccI CCATC 5 cut(s) 445, 557, 596, 1042, 1451
BceAI ACGGC 2 cut(s) 355, 1825
BciT130I CCWGG 2 cut(s) 1918, 1935
BcoDI GTCTC 3 cut(s) 166, 201, 1371
BfaI CTAG 2 cut(s) 1256, 1292
BfoI RGCGCY 1 cut(s) 823
BfrI CTTAAG 1 cut(s) 1493
BglI GCCNNNNNGGC 1 cut(s) 182
BglII AGATCT 3 cut(s) 60, 991, 1294
BisI GCNGC 4 cut(s) 103, 174, 177, 1607
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 4 cut(s) 104, 175, 178, 1608
Bme1390I CCNGG 2 cut(s) 1918, 1935
Bme18I GGWCC 2 cut(s) 1638, 1938
BmgT120I GGNCC 7 cut(s) 135, 142, 368, 629, 1478, 1638, 1938
BmiI GGNNCC 7 cut(s) 411, 630, 821, 1639, 1879, 1932, 1939
BmrFI CCNGG 2 cut(s) 1918, 1935
BmsI GCATC 8 cut(s) 340, 468, 850, 895, 1228, 1408, 1495, 1836
BpiI GAAGAC 1 cut(s) 239
BpmI CTGGAG 2 cut(s) 721, 1689
Bpu1102I GCTNAGC 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 698
BsaAI YACGTR 1 cut(s) 306
BsaHI GRCGYC 2 cut(s) 820, 1123
BsaJI CCNNGG 9 cut(s) 138, 324, 371, 823, 1422, 1641, 1807, 1881, 1934
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 1647
Bse1I ACTGG 4 cut(s) 652, 704, 1706, 1727
BseBI CCWGG 2 cut(s) 1918, 1935
BseDI CCNNGG 9 cut(s) 138, 324, 371, 823, 1422, 1641, 1807, 1881, 1934
BseGI GGATG 6 cut(s) 44, 568, 886, 1057, 1240, 1510
BseLI CCNNNNNNNGG 2 cut(s) 132, 1647
BseMII CTCAG 7 cut(s) 212, 270, 304, 527, 1149, 1244, 1754
BseNI ACTGG 4 cut(s) 652, 704, 1706, 1727
BseRI GAGGAG 4 cut(s) 19, 29, 278, 809
BseXI GCAGC 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 1679
BshNI GGYRCC 2 cut(s) 819, 1877
BsiHKAI GWGCWC 2 cut(s) 532, 1532
BslFI GGGAC 1 cut(s) 1951
BslI CCNNNNNNNGG 2 cut(s) 132, 1647
BsmAI GTCTC 3 cut(s) 166, 201, 1371
BsmBI CGTCTC 1 cut(s) 1371
BsmFI GGGAC 1 cut(s) 1951
Bsp1286I GDGCHC 2 cut(s) 532, 1532
Bsp1407I TGTACA 1 cut(s) 1038
Bsp1720I GCTNAGC 1 cut(s) 513
Bsp19I CCATGG 1 cut(s) 324
BspACI CCGC 7 cut(s) 171, 174, 177, 626, 867, 1461, 1606
BspCNI CTCAG 7 cut(s) 211, 271, 303, 526, 1150, 1243, 1753
BspHI TCATGA 1 cut(s) 1614
BspLI GGNNCC 7 cut(s) 411, 630, 821, 1639, 1879, 1932, 1939
BspPI GGATC 7 cut(s) 462, 572, 624, 743, 1908, 1925, 1938
BspQI GCTCTTC 1 cut(s) 347
BspT107I GGYRCC 2 cut(s) 819, 1877
BspTI CTTAAG 1 cut(s) 1493
BsrGI TGTACA 1 cut(s) 1038
BsrI ACTGG 4 cut(s) 652, 704, 1706, 1727
BssECI CCNNGG 9 cut(s) 138, 324, 371, 823, 1422, 1641, 1807, 1881, 1934
BssNI GRCGYC 2 cut(s) 820, 1123
BssT1I CCWWGG 6 cut(s) 138, 324, 823, 1422, 1641, 1881
Bst2UI CCWGG 2 cut(s) 1918, 1935
Bst4CI ACNGT 3 cut(s) 1171, 1903, 1909
Bst6I CTCTTC 5 cut(s) 37, 70, 347, 428, 1299
BstACI GRCGYC 2 cut(s) 820, 1123
BstAFI CTTAAG 1 cut(s) 1493
BstAPI GCANNNNNTGC 1 cut(s) 1406
BstAUI TGTACA 1 cut(s) 1038
BstBAI YACGTR 1 cut(s) 306
BstC8I GCNNGC 3 cut(s) 774, 865, 1713
BstDEI CTNAG 8 cut(s) 198, 279, 290, 513, 1158, 1230, 1412, 1740
BstDSI CCRYGG 3 cut(s) 324, 371, 1807
BstENI CCTNNNNNAGG 1 cut(s) 1645
BstF5I GGATG 6 cut(s) 44, 568, 886, 1057, 1240, 1510
BstH2I RGCGCY 1 cut(s) 823
BstHHI GCGC 2 cut(s) 313, 822
BstMAI GTCTC 3 cut(s) 166, 201, 1371
BstMWI GCNNNNNNNGC 3 cut(s) 182, 1203, 1406
BstNI CCWGG 2 cut(s) 1918, 1935
BstNSI RCATGY 2 cut(s) 317, 980
BstSCI CCNGG 2 cut(s) 1916, 1933
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 8 cut(s) 60, 577, 616, 735, 991, 1294, 1913, 1930
BstYI RGATCY 8 cut(s) 60, 577, 616, 735, 991, 1294, 1913, 1930
BtgI CCRYGG 3 cut(s) 324, 371, 1807
BtsCI GGATG 6 cut(s) 44, 568, 886, 1057, 1240, 1510
BtsI GCAGTG 2 cut(s) 744, 1532
BtsIMutI CAGTG 4 cut(s) 744, 1532, 1713, 1734
Cac8I GCNNGC 3 cut(s) 774, 865, 1713
CciI TCATGA 1 cut(s) 1614
CfoI GCGC 2 cut(s) 313, 822
Cfr13I GGNCC 7 cut(s) 135, 142, 368, 629, 1478, 1638, 1938
CseI GACGC 1 cut(s) 1112
Csp6I GTAC 1 cut(s) 1039
CviAII CATG 9 cut(s) 314, 325, 635, 750, 977, 1202, 1615, 1718, 1942
CviQI GTAC 1 cut(s) 1039
DdeI CTNAG 8 cut(s) 198, 279, 290, 513, 1158, 1230, 1412, 1740
DinI GGCGCC 1 cut(s) 821
DrdI GACNNNNNNGTC 1 cut(s) 1958
DseDI GACNNNNNNGTC 1 cut(s) 1958
EaeI YGGCCR 3 cut(s) 21, 183, 321
Eam1104I CTCTTC 5 cut(s) 37, 70, 347, 428, 1299
EarI CTCTTC 5 cut(s) 37, 70, 347, 428, 1299
EciI GGCGGA 1 cut(s) 160
Eco130I CCWWGG 6 cut(s) 138, 324, 823, 1422, 1641, 1881
Eco47I GGWCC 2 cut(s) 1638, 1938
Eco57I CTGAAG 1 cut(s) 1312
Eco72I CACGTG 1 cut(s) 306
EcoNI CCTNNNNNAGG 1 cut(s) 1645
EcoO109I RGGNCCY 3 cut(s) 135, 629, 1638
EcoRI GAATTC 2 cut(s) 294, 1837
EcoRII CCWGG 2 cut(s) 1916, 1933
EcoT14I CCWWGG 6 cut(s) 138, 324, 823, 1422, 1641, 1881
EgeI GGCGCC 1 cut(s) 821
EheI GGCGCC 1 cut(s) 821
ErhI CCWWGG 6 cut(s) 138, 324, 823, 1422, 1641, 1881
Esp3I CGTCTC 1 cut(s) 1371
FaeI CATG 9 cut(s) 317, 328, 638, 753, 980, 1205, 1618, 1721, 1945
FalI AAGNNNNNCTT 2 cut(s) 1050, 1082
FaqI GGGAC 1 cut(s) 1951
FatI CATG 9 cut(s) 313, 324, 634, 749, 976, 1201, 1614, 1717, 1941
FauI CCCGC 2 cut(s) 619, 860
FauNDI CATATG 1 cut(s) 1579
Fnu4HI GCNGC 4 cut(s) 103, 174, 177, 1607
FokI GGATG 6 cut(s) 31, 575, 873, 1064, 1247, 1517
Fsp4HI GCNGC 4 cut(s) 103, 174, 177, 1607
FspAI RTGCGCAY 1 cut(s) 312
FspBI CTAG 2 cut(s) 1256, 1292
FspI TGCGCA 1 cut(s) 312
GlaI GCGC 2 cut(s) 312, 821
GluI GCNGC 4 cut(s) 103, 174, 177, 1607
GsaI CCCAGC 1 cut(s) 1683
GsuI CTGGAG 2 cut(s) 721, 1689
HaeII RGCGCY 1 cut(s) 823
HgaI GACGC 1 cut(s) 1112
HhaI GCGC 2 cut(s) 313, 822
Hin1I GRCGYC 2 cut(s) 820, 1123
Hin1II CATG 9 cut(s) 317, 328, 638, 753, 980, 1205, 1618, 1721, 1945
Hin6I GCGC 2 cut(s) 311, 820
HinP1I GCGC 2 cut(s) 311, 820
HincII GTYRAC 3 cut(s) 1546, 1585, 1977
HindII GTYRAC 3 cut(s) 1546, 1585, 1977
HindIII AAGCTT 2 cut(s) 242, 1195
HpaI GTTAAC 1 cut(s) 1977
HphI GGTGA 4 cut(s) 719, 1405, 1808, 1937
Hpy166II GTNNAC 4 cut(s) 1546, 1585, 1799, 1977
Hpy188I TCNGA 8 cut(s) 15, 280, 293, 336, 1047, 1266, 1597, 1843
Hpy8I GTNNAC 4 cut(s) 1546, 1585, 1799, 1977
Hpy99I CGWCG 1 cut(s) 1357
HpyAV CCTTC 5 cut(s) 220, 273, 439, 791, 1509
HpyCH4III ACNGT 3 cut(s) 1171, 1903, 1909
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 7 cut(s) 730, 749, 772, 983, 1241, 1711, 1755
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 1203, 1406
HpyF3I CTNAG 8 cut(s) 198, 279, 290, 513, 1158, 1230, 1412, 1740
HpySE526I ACGT 1 cut(s) 305
Hsp92I GRCGYC 2 cut(s) 820, 1123
Hsp92II CATG 9 cut(s) 317, 328, 638, 753, 980, 1205, 1618, 1721, 1945
HspAI GCGC 2 cut(s) 311, 820
KasI GGCGCC 1 cut(s) 819
KspAI GTTAAC 1 cut(s) 1977
LguI GCTCTTC 1 cut(s) 347
LmnI GCTCC 2 cut(s) 409, 1440
Lsp1109I GCAGC 1 cut(s) 89
LweI GCATC 8 cut(s) 340, 468, 850, 895, 1228, 1408, 1495, 1836
MaeI CTAG 2 cut(s) 1256, 1292
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 4 cut(s) 358, 1124, 1729, 1903
MfeI CAATTG 2 cut(s) 363, 767
MflI RGATCY 8 cut(s) 60, 577, 616, 735, 991, 1294, 1913, 1930
MhlI GDGCHC 2 cut(s) 532, 1532
MlsI TGGCCA 3 cut(s) 23, 185, 323
MluNI TGGCCA 3 cut(s) 23, 185, 323
Mly113I GGCGCC 1 cut(s) 820
MlyI GAGTC 6 cut(s) 168, 203, 281, 689, 1580, 1668
MmeI TCCRAC 2 cut(s) 1354, 1418
Mox20I TGGCCA 3 cut(s) 23, 185, 323
MroXI GAANNNNTTC 1 cut(s) 341
MscI TGGCCA 3 cut(s) 23, 185, 323
MseI TTAA 8 cut(s) 96, 570, 657, 1344, 1494, 1551, 1862, 1976
MslI CAYNNNNRTG 1 cut(s) 306
Msp20I TGGCCA 3 cut(s) 23, 185, 323
MspA1I CMGCKG 1 cut(s) 179
MspCI CTTAAG 1 cut(s) 1493
MspR9I CCNGG 2 cut(s) 1918, 1935
MunI CAATTG 2 cut(s) 363, 767
MvaI CCWGG 2 cut(s) 1918, 1935
MwoI GCNNNNNNNGC 3 cut(s) 182, 1203, 1406
NarI GGCGCC 1 cut(s) 820
NcoI CCATGG 1 cut(s) 324
NdeI CATATG 1 cut(s) 1579
NlaIII CATG 9 cut(s) 317, 328, 638, 753, 980, 1205, 1618, 1721, 1945
NlaIV GGNNCC 7 cut(s) 411, 630, 821, 1639, 1879, 1932, 1939
NmeAIII GCCGAG 1 cut(s) 833
NmuCI GTSAC 3 cut(s) 358, 1124, 1729
NsbI TGCGCA 1 cut(s) 312
NspI RCATGY 2 cut(s) 317, 980
OliI CACNNNNGTG 1 cut(s) 306
PagI TCATGA 1 cut(s) 1614
PciI ACATGT 1 cut(s) 976
PciSI GCTCTTC 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 5 cut(s) 7, 438, 1618, 1892, 1968
PkrI GCNGC 4 cut(s) 104, 175, 178, 1608
PleI GAGTC 6 cut(s) 167, 202, 280, 688, 1580, 1667
PluTI GGCGCC 1 cut(s) 823
PmaCI CACGTG 1 cut(s) 306
PmlI CACGTG 1 cut(s) 306
PpsI GAGTC 6 cut(s) 167, 202, 280, 688, 1580, 1667
Ppu21I YACGTR 1 cut(s) 306
PpuMI RGGWCCY 1 cut(s) 1638
PscI ACATGT 1 cut(s) 976
PshBI ATTAAT 1 cut(s) 1862
PsiI TTATAA 1 cut(s) 1134
Psp5II RGGWCCY 1 cut(s) 1638
Psp6I CCWGG 2 cut(s) 1916, 1933
PspCI CACGTG 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 1679
PspGI CCWGG 2 cut(s) 1916, 1933
PspN4I GGNNCC 7 cut(s) 411, 630, 821, 1639, 1879, 1932, 1939
PspPI GGNCC 7 cut(s) 135, 142, 368, 629, 1478, 1638, 1938
PspPPI RGGWCCY 1 cut(s) 1638
PsuI RGATCY 8 cut(s) 60, 577, 616, 735, 991, 1294, 1913, 1930
RsaI GTAC 1 cut(s) 1040
RsaNI GTAC 1 cut(s) 1039
RseI CAYNNNNRTG 1 cut(s) 306
SapI GCTCTTC 1 cut(s) 347
SaqAI TTAA 8 cut(s) 96, 570, 657, 1344, 1494, 1551, 1862, 1976
SatI GCNGC 4 cut(s) 103, 174, 177, 1607
Sau96I GGNCC 7 cut(s) 135, 142, 368, 629, 1478, 1638, 1938
SchI GAGTC 6 cut(s) 168, 203, 281, 689, 1580, 1668
ScrFI CCNGG 2 cut(s) 1918, 1935
SduI GDGCHC 2 cut(s) 532, 1532
SfaNI GCATC 8 cut(s) 340, 468, 850, 895, 1228, 1408, 1495, 1836
SfoI GGCGCC 1 cut(s) 821
SinI GGWCC 2 cut(s) 1638, 1938
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 2 cut(s) 677, 1493
SmoI CTYRAG 2 cut(s) 677, 1493
SsiI CCGC 7 cut(s) 171, 174, 177, 626, 867, 1461, 1606
SspDI GGCGCC 1 cut(s) 819
SspMI CTAG 2 cut(s) 1256, 1292
StyD4I CCNGG 2 cut(s) 1916, 1933
StyI CCWWGG 6 cut(s) 138, 324, 823, 1422, 1641, 1881
TaaI ACNGT 3 cut(s) 1171, 1903, 1909
TaiI ACGT 1 cut(s) 308
TaqI TCGA 5 cut(s) 206, 672, 1078, 1352, 1746
TatI WGTACW 1 cut(s) 1038
TauI GCSGC 3 cut(s) 176, 179, 1609
TfiI GAWTC 5 cut(s) 7, 438, 1618, 1892, 1968
Tru1I TTAA 8 cut(s) 96, 570, 657, 1344, 1494, 1551, 1862, 1976
Tru9I TTAA 8 cut(s) 96, 570, 657, 1344, 1494, 1551, 1862, 1976
TscAI CASTG 4 cut(s) 751, 1532, 1713, 1734
TseFI GTSAC 3 cut(s) 358, 1124, 1729
TseI GCWGC 1 cut(s) 102
Tsp45I GTSAC 3 cut(s) 358, 1124, 1729
TspDTI ATGAA 9 cut(s) 621, 726, 773, 1077, 1100, 1197, 1290, 1353, 1610
TspGWI ACGGA 2 cut(s) 1202, 1316
TspRI CASTG 4 cut(s) 751, 1532, 1713, 1734
Vha464I CTTAAG 1 cut(s) 1493
VpaK11BI GGWCC 2 cut(s) 1638, 1938
VspI ATTAAT 1 cut(s) 1862
XagI CCTNNNNNAGG 1 cut(s) 1645
XapI RAATTY 7 cut(s) 294, 472, 555, 1319, 1591, 1837, 1854
XbaI TCTAGA 2 cut(s) 1255, 1291
XceI RCATGY 2 cut(s) 317, 980
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 2 cut(s) 1256, 1292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.