Rorug06G0096700

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000216
Physical Location & Seq
Reverse (-)
12903000 .. 12905404
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0096700.1

Sequence Viewer

Length: 714 bp
ATGGCTCCTTCAATTTCTAATTTCTCTTCTGTCTTCCTTGTTCTTCTTGCACTGTATCTCGGCCTCATTCACCAGGTTATGAGTCAGATTAGTGTTAATATTACTATTAATCCCTCTAACTGCGCGCCCATTAATGCCTCCGATGTCGATCGCGTTCAGTTTTCCTTGAACTTAGAATTCTGTCAAGCTGAGTATTTTCTATACGGCGCTCTTGGCAAAGGCCTCGACAGCATCAGTCCGGATTTGGCCCAAGGTGGTCCGCCTCCCATTGGTGCTCGGAAGGCCTTGCTTCTCGACCCTGATGTCGCTCGCATCAGTGAGGAGATTGCTTATCAACAAGTTGGTAACATCAGGTCTATTGTTCAGACTGTGGGAGGAATTCCAAGGCCTCTACTAAATCTCGGCCTCGTAAATTGGGGATTATTCTTTGACCTAGCACTCGGGAAACCCCTTATCCCTTCATTTAATCCATACGCAAACTCCCTCAATTTTCTGTTAGGGGCCTATGCCATGCCTGATCTCGCACAACTATCCTATGTTAGCTCGATTCCAAGCCTCACGACAAATTCTTCTTCATTATCTTTGGCTTCAAAGCTTTTGCCAATCAAGGCTGGACAGAGTGCAGTGATACGTACATTGTTGTACCCGAATGCAACACAAGTGGTGCCTCCATATAATATCACGGTGGGTGAATTCACCAAGGCCATTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

237

Amino Acids

25.3

Weight (kDa)

5.73

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 47 - 215 1.5e-21 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 664
AccII CGCG 2 cut(s) 125, 153
AccIII TCCGGA 1 cut(s) 238
AciI CCGC 1 cut(s) 260
AcsI RAATTY 4 cut(s) 176, 378, 565, 692
AfaI GTAC 2 cut(s) 634, 644
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 3 cut(s) 12, 169, 591
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 3 cut(s) 188, 543, 595
AluI AGCT 3 cut(s) 188, 543, 595
Alw21I GWGCWC 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 440
Aor13HI TCCGGA 1 cut(s) 238
AoxI GGCC 8 cut(s) 61, 220, 246, 282, 386, 403, 501, 702
ApoI RAATTY 4 cut(s) 176, 378, 565, 692
AseI ATTAAT 2 cut(s) 108, 132
AspLEI GCGC 3 cut(s) 125, 127, 209
AspS9I GGNCC 3 cut(s) 247, 257, 501
AsuHPI GGTGA 3 cut(s) 62, 688, 701
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 664
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 277
BceAI ACGGC 1 cut(s) 220
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BciT130I CCWGG 1 cut(s) 74
BfaI CTAG 2 cut(s) 434, 712
BfoI RGCGCY 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 257
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 3 cut(s) 247, 257, 501
BmiI GGNNCC 3 cut(s) 6, 502, 666
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 2 cut(s) 240, 321
BpiI GAAGAC 1 cut(s) 25
BsaAI YACGTR 1 cut(s) 632
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 250, 383, 699
BsaWI WCCGGW 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 147
BseAI TCCGGA 1 cut(s) 238
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 3 cut(s) 250, 383, 699
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 180
BsePI GCGCGC 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 642
Bsh1236I CGCG 2 cut(s) 125, 153
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 8 cut(s) 63, 222, 248, 284, 388, 405, 503, 704
BshNI GGYRCC 1 cut(s) 664
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 269
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 8 cut(s) 63, 222, 248, 284, 388, 405, 503, 704
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 277
Bsp13I TCCGGA 1 cut(s) 238
Bsp143I GATC 2 cut(s) 148, 517
BspACI CCGC 1 cut(s) 260
BspANI GGCC 8 cut(s) 63, 222, 248, 284, 388, 405, 503, 704
BspCNI CTCAG 1 cut(s) 181
BspEI TCCGGA 1 cut(s) 238
BspFNI CGCG 2 cut(s) 125, 153
BspLI GGNNCC 3 cut(s) 6, 502, 666
BspT107I GGYRCC 1 cut(s) 664
BssECI CCNNGG 3 cut(s) 250, 383, 699
BssHII GCGCGC 1 cut(s) 123
BssMI GATC 2 cut(s) 148, 517
BssT1I CCWWGG 3 cut(s) 250, 383, 699
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 3 cut(s) 54, 370, 685
Bst6I CTCTTC 1 cut(s) 31
BstBAI YACGTR 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 125, 310
BstDEI CTNAG 2 cut(s) 172, 189
BstFNI CGCG 2 cut(s) 125, 153
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 3 cut(s) 125, 127, 209
BstKTI GATC 2 cut(s) 151, 520
BstMBI GATC 2 cut(s) 148, 517
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 3 cut(s) 213, 228, 281
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSNI TACGTA 1 cut(s) 632
BstUI CGCG 2 cut(s) 125, 153
BstV2I GAAGAC 1 cut(s) 25
BsuRI GGCC 8 cut(s) 63, 222, 248, 284, 388, 405, 503, 704
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 3 cut(s) 50, 322, 630
Cac8I GCNNGC 2 cut(s) 125, 310
CfoI GCGC 3 cut(s) 125, 127, 209
Cfr13I GGNCC 3 cut(s) 247, 257, 501
CsiI ACCWGGT 1 cut(s) 72
Csp6I GTAC 2 cut(s) 633, 643
CspCI CAANNNNNGTGG 2 cut(s) 642, 677
CviAII CATG 1 cut(s) 511
CviQI GTAC 2 cut(s) 633, 643
DdeI CTNAG 2 cut(s) 172, 189
DpnI GATC 2 cut(s) 150, 519
DpnII GATC 2 cut(s) 148, 517
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
EciI GGCGGA 1 cut(s) 249
Eco105I TACGTA 1 cut(s) 632
Eco130I CCWWGG 3 cut(s) 250, 383, 699
Eco147I AGGCCT 3 cut(s) 222, 284, 388
Eco47I GGWCC 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 501
EcoRI GAATTC 3 cut(s) 176, 378, 692
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 3 cut(s) 250, 383, 699
ErhI CCWWGG 3 cut(s) 250, 383, 699
FaeI CATG 1 cut(s) 514
FaiI YATR 8 cut(s) 80, 202, 472, 507, 512, 537, 673, 675
FatI CATG 1 cut(s) 510
FspBI CTAG 2 cut(s) 434, 712
GlaI GCGC 3 cut(s) 124, 126, 208
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 8 cut(s) 63, 222, 248, 284, 388, 405, 503, 704
HapII CCGG 1 cut(s) 239
HhaI GCGC 3 cut(s) 125, 127, 209
Hin1II CATG 1 cut(s) 514
Hin6I GCGC 3 cut(s) 123, 125, 207
HinP1I GCGC 3 cut(s) 123, 125, 207
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 2 cut(s) 82, 547
HpaII CCGG 1 cut(s) 239
HphI GGTGA 3 cut(s) 62, 688, 701
Hpy188I TCNGA 4 cut(s) 87, 142, 279, 366
Hpy188III TCNNGA 4 cut(s) 239, 293, 442, 559
HpyAV CCTTC 3 cut(s) 18, 274, 468
HpyCH4III ACNGT 3 cut(s) 54, 370, 685
HpyCH4IV ACGT 1 cut(s) 631
HpyCH4V TGCA 3 cut(s) 50, 623, 653
HpyF10VI GCNNNNNNNGC 3 cut(s) 213, 228, 281
HpyF3I CTNAG 2 cut(s) 172, 189
HpySE526I ACGT 1 cut(s) 631
Hsp92II CATG 1 cut(s) 514
HspAI GCGC 3 cut(s) 123, 125, 207
Kpn2I TCCGGA 1 cut(s) 238
Kzo9I GATC 2 cut(s) 148, 517
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 7 cut(s) 59, 86, 252, 312, 337, 528, 597
LweI GCATC 2 cut(s) 240, 321
MabI ACCWGGT 1 cut(s) 72
MaeI CTAG 2 cut(s) 434, 712
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 1 cut(s) 344
MalI GATC 2 cut(s) 150, 519
MboI GATC 2 cut(s) 148, 517
MboII GAAGA 5 cut(s) 18, 25, 35, 561, 564
MhlI GDGCHC 1 cut(s) 277
MluCI AATT 8 cut(s) 12, 19, 176, 378, 412, 487, 565, 692
MlyI GAGTC 1 cut(s) 91
MroI TCCGGA 1 cut(s) 238
MseI TTAA 4 cut(s) 96, 108, 132, 465
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 74
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 2 cut(s) 125, 153
MwoI GCNNNNNNNGC 3 cut(s) 213, 228, 281
NdeII GATC 2 cut(s) 148, 517
NlaIII CATG 1 cut(s) 514
NlaIV GGNNCC 3 cut(s) 6, 502, 666
NmeAIII GCCGAG 2 cut(s) 39, 381
PauI GCGCGC 1 cut(s) 123
PceI AGGCCT 3 cut(s) 222, 284, 388
PctI GAATGC 1 cut(s) 655
PfeI GAWTC 1 cut(s) 547
Ple19I CGATCG 1 cut(s) 151
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 632
PshBI ATTAAT 2 cut(s) 108, 132
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 3 cut(s) 6, 502, 666
PspPI GGNCC 3 cut(s) 247, 257, 501
PteI GCGCGC 1 cut(s) 123
PvuI CGATCG 1 cut(s) 151
RsaI GTAC 2 cut(s) 634, 644
RsaNI GTAC 2 cut(s) 633, 643
SaqAI TTAA 4 cut(s) 96, 108, 132, 465
Sau3AI GATC 2 cut(s) 148, 517
Sau96I GGNCC 3 cut(s) 247, 257, 501
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 277
SetI ASST 8 cut(s) 78, 190, 256, 356, 435, 545, 597, 634
SexAI ACCWGGT 1 cut(s) 72
SfaNI GCATC 2 cut(s) 240, 321
SinI GGWCC 1 cut(s) 257
SnaBI TACGTA 1 cut(s) 632
Sse9I AATT 8 cut(s) 12, 19, 176, 378, 412, 487, 565, 692
SseBI AGGCCT 3 cut(s) 222, 284, 388
SsiI CCGC 1 cut(s) 260
SspI AATATT 1 cut(s) 100
SspMI CTAG 2 cut(s) 434, 712
StuI AGGCCT 3 cut(s) 222, 284, 388
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 3 cut(s) 250, 383, 699
TaaI ACNGT 3 cut(s) 54, 370, 685
TaiI ACGT 1 cut(s) 634
TaqI TCGA 4 cut(s) 147, 225, 294, 545
TasI AATT 8 cut(s) 12, 19, 176, 378, 412, 487, 565, 692
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 4 cut(s) 96, 108, 132, 465
Tru9I TTAA 4 cut(s) 96, 108, 132, 465
TscAI CASTG 3 cut(s) 57, 322, 630
TspDTI ATGAA 2 cut(s) 450, 564
TspRI CASTG 3 cut(s) 57, 322, 630
VpaK11BI GGWCC 1 cut(s) 257
VspI ATTAAT 2 cut(s) 108, 132
XapI RAATTY 4 cut(s) 176, 378, 565, 692
XspI CTAG 2 cut(s) 434, 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.