Rh2DG599400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
83139015 .. 83139404
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG599400.1

Sequence Viewer

Length: 390 bp
ATGGCCTCTGATCATATTCAACACTCGAAAAGATCATCATCACCAGAACGGTTCAGAAGACGGCATGATTTTGATCTTAACCTCCCTCCTGCTCCAGAACAAGAAGGAGCTGCTGTGGATGTGAGATCAGCAGCACCAAAATTGATGAATAATAGTATTGATGATCTCCCTGATGGTTGCTTGAAATCCTTTATCGACTTGCGTGCTATAAGTTTGTTGCTCAATGCAAGCGTGTCTCCAAGCGTTGGTGCAATCTCATGTCTGAACCTTCTTTTATTGGCGGCTTTGTGCGTCTCAAAAGTGATAAGCAATCACCAATTAAACATTCTCTGCTGGACCATAGTGGAACGGAATTCATCGGCAGATTGTCATCTTCCACCAAGCCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.08

Weight (kDa)

6.94

Isoelectric Point (pI)

76.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 245
AciI CCGC 2 cut(s) 281, 385
AcsI RAATTY 1 cut(s) 352
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 20, 184
AjuI GAANNNNNNNTTGG 2 cut(s) 309, 341
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 2 cut(s) 240, 298
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 110, 131
ApoI RAATTY 1 cut(s) 352
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 33, 305
AvaII GGWCC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 97, 143
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 77
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BclI TGATCA 1 cut(s) 10
BcoDI GTCTC 2 cut(s) 240, 298
BisI GCNGC 4 cut(s) 111, 132, 282, 385
BlsI GCNGC 4 cut(s) 112, 133, 283, 386
Bme18I GGWCC 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 64
BpmI CTGGAG 1 cut(s) 78
BsaBI GATNNNNATC 3 cut(s) 37, 72, 369
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse8I GATNNNNATC 3 cut(s) 37, 72, 369
BseGI GGATG 1 cut(s) 124
BseJI GATNNNNATC 3 cut(s) 37, 72, 369
BseLI CCNNNNNNNGG 1 cut(s) 245
BseXI GCAGC 2 cut(s) 97, 143
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 2 cut(s) 240, 298
BsmBI CGTCTC 1 cut(s) 298
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 5 cut(s) 10, 32, 73, 125, 163
BspACI CCGC 2 cut(s) 281, 385
BspANI GGCC 1 cut(s) 5
BssMI GATC 5 cut(s) 10, 32, 73, 125, 163
Bst4CI ACNGT 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 204, 229
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 5 cut(s) 13, 35, 76, 128, 166
BstMAI GTCTC 2 cut(s) 240, 298
BstMBI GATC 5 cut(s) 10, 32, 73, 125, 163
BstV1I GCAGC 2 cut(s) 97, 143
BstV2I GAAGAC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 2 cut(s) 204, 229
Cfr13I GGNCC 1 cut(s) 336
CseI GACGC 1 cut(s) 280
CviAII CATG 2 cut(s) 65, 258
CviJI RGCY 4 cut(s) 5, 110, 284, 384
CviKI_1 RGCY 4 cut(s) 5, 110, 284, 384
DpnI GATC 5 cut(s) 12, 34, 75, 127, 165
DpnII GATC 5 cut(s) 10, 32, 73, 125, 163
Eco47I GGWCC 1 cut(s) 336
EcoRI GAATTC 1 cut(s) 352
Esp3I CGTCTC 1 cut(s) 298
FaeI CATG 2 cut(s) 68, 261
FaiI YATR 5 cut(s) 15, 66, 209, 259, 341
FatI CATG 2 cut(s) 64, 257
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 4 cut(s) 111, 132, 282, 385
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 4 cut(s) 111, 132, 282, 385
GluI GCNGC 4 cut(s) 111, 132, 282, 385
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 68, 261
HphI GGTGA 2 cut(s) 33, 305
Hpy188I TCNGA 3 cut(s) 10, 56, 264
Hpy188III TCNNGA 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 98, 278
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 227, 251
Hsp92II CATG 2 cut(s) 68, 261
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 5 cut(s) 10, 32, 73, 125, 163
LmnI GCTCC 2 cut(s) 97, 107
LpnPI CCDG 5 cut(s) 57, 102, 108, 183, 319
Lsp1109I GCAGC 2 cut(s) 97, 143
MalI GATC 5 cut(s) 12, 34, 75, 127, 165
MboI GATC 5 cut(s) 10, 32, 73, 125, 163
MboII GAAGA 2 cut(s) 69, 365
MluCI AATT 3 cut(s) 140, 317, 352
MnlI CCTC 3 cut(s) 16, 92, 96
MseI TTAA 2 cut(s) 78, 320
NdeII GATC 5 cut(s) 10, 32, 73, 125, 163
NlaIII CATG 2 cut(s) 68, 261
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 4 cut(s) 112, 133, 283, 386
PspPI GGNCC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 78, 320
SatI GCNGC 4 cut(s) 111, 132, 282, 385
Sau3AI GATC 5 cut(s) 10, 32, 73, 125, 163
Sau96I GGNCC 1 cut(s) 336
SetI ASST 3 cut(s) 84, 112, 270
SinI GGWCC 1 cut(s) 336
Sse9I AATT 3 cut(s) 140, 317, 352
SsiI CCGC 2 cut(s) 281, 385
TaaI ACNGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 26, 195
TasI AATT 3 cut(s) 140, 317, 352
TauI GCSGC 2 cut(s) 284, 387
Tru1I TTAA 2 cut(s) 78, 320
Tru9I TTAA 2 cut(s) 78, 320
TseI GCWGC 2 cut(s) 110, 131
TspDTI ATGAA 2 cut(s) 161, 345
TspGWI ACGGA 1 cut(s) 364
Van91I CCANNNNNTGG 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 336
XapI RAATTY 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.