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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 230 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 96, 1028 |
| AccI | GTMKAC | 1 cut(s) | 49 |
| AccII | CGCG | 5 cut(s) | 253, 255, 372, 374, 764 |
| AciI | CCGC | 5 cut(s) | 133, 374, 693, 805, 1112 |
| AclI | AACGTT | 1 cut(s) | 1077 |
| AclWI | GGATC | 3 cut(s) | 110, 650, 1013 |
| AcoI | YGGCCR | 1 cut(s) | 1159 |
| AcsI | RAATTY | 4 cut(s) | 434, 698, 734, 835 |
| AcuI | CTGAAG | 1 cut(s) | 432 |
| AcyI | GRCGYC | 2 cut(s) | 227, 799 |
| AfaI | GTAC | 4 cut(s) | 141, 449, 455, 1084 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 96, 1028 |
| AflIII | ACRYGT | 3 cut(s) | 310, 762, 1202 |
| AgsI | TTSAA | 8 cut(s) | 38, 247, 664, 734, 818, 1142, 1265, 1285 |
| AjnI | CCWGG | 2 cut(s) | 562, 929 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 604, 636 |
| AluBI | AGCT | 4 cut(s) | 360, 367, 495, 1278 |
| AluI | AGCT | 4 cut(s) | 360, 367, 495, 1278 |
| Alw26I | GTCTC | 1 cut(s) | 518 |
| AlwI | GGATC | 3 cut(s) | 110, 650, 1013 |
| AoxI | GGCC | 1 cut(s) | 1159 |
| ApeKI | GCWGC | 2 cut(s) | 420, 689 |
| ApoI | RAATTY | 4 cut(s) | 434, 698, 734, 835 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 217, 249 |
| AseI | ATTAAT | 1 cut(s) | 885 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 942 |
| AspLEI | GCGC | 2 cut(s) | 255, 374 |
| AspS9I | GGNCC | 2 cut(s) | 196, 628 |
| AsuHPI | GGTGA | 5 cut(s) | 122, 542, 581, 752, 1028 |
| AsuII | TTCGAA | 1 cut(s) | 475 |
| AvaII | GGWCC | 2 cut(s) | 196, 628 |
| AxyI | CCTNAGG | 1 cut(s) | 200 |
| BanII | GRGCYC | 1 cut(s) | 381 |
| BbvI | GCAGC | 2 cut(s) | 407, 676 |
| BccI | CCATC | 7 cut(s) | 127, 410, 594, 619, 895, 1022, 1286 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 628, 662 |
| BciT130I | CCWGG | 2 cut(s) | 564, 931 |
| BcoDI | GTCTC | 1 cut(s) | 518 |
| BfaI | CTAG | 3 cut(s) | 782, 1002, 1175 |
| BisI | GCNGC | 5 cut(s) | 421, 690, 693, 806, 1112 |
| BlsI | GCNGC | 5 cut(s) | 422, 691, 694, 807, 1113 |
| Bme1390I | CCNGG | 2 cut(s) | 564, 931 |
| Bme18I | GGWCC | 2 cut(s) | 196, 628 |
| BmgT120I | GGNCC | 2 cut(s) | 196, 628 |
| BmiI | GGNNCC | 2 cut(s) | 945, 1110 |
| BmrFI | CCNGG | 2 cut(s) | 564, 931 |
| BmsI | GCATC | 1 cut(s) | 1057 |
| BoxI | GACNNNNGTC | 1 cut(s) | 194 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 500, 532 |
| Bpu10I | CCTNAGC | 1 cut(s) | 491 |
| Bpu14I | TTCGAA | 1 cut(s) | 475 |
| BsaHI | GRCGYC | 2 cut(s) | 227, 799 |
| BsaJI | CCNNGG | 3 cut(s) | 299, 562, 930 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 437, 467 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 96, 1028 |
| Bse1I | ACTGG | 1 cut(s) | 532 |
| Bse21I | CCTNAGG | 1 cut(s) | 200 |
| Bse3DI | GCAATG | 1 cut(s) | 101 |
| BseBI | CCWGG | 2 cut(s) | 564, 931 |
| BseDI | CCNNGG | 3 cut(s) | 299, 562, 930 |
| BseGI | GGATG | 4 cut(s) | 211, 630, 1039, 1219 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 96, 1028 |
| BseMI | GCAATG | 1 cut(s) | 101 |
| BseMII | CTCAG | 1 cut(s) | 513 |
| BseNI | ACTGG | 1 cut(s) | 532 |
| BseXI | GCAGC | 2 cut(s) | 407, 676 |
| BsgI | GTGCAG | 1 cut(s) | 406 |
| Bsh1236I | CGCG | 5 cut(s) | 253, 255, 372, 374, 764 |
| BshFI | GGCC | 1 cut(s) | 1161 |
| BsiSI | CCGG | 1 cut(s) | 828 |
| BslFI | GGGAC | 2 cut(s) | 288, 1104 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 96, 1028 |
| BsmAI | GTCTC | 1 cut(s) | 518 |
| BsmFI | GGGAC | 2 cut(s) | 288, 1104 |
| BsnI | GGCC | 1 cut(s) | 1161 |
| Bsp119I | TTCGAA | 1 cut(s) | 475 |
| Bsp1286I | GDGCHC | 1 cut(s) | 381 |
| Bsp143I | GATC | 5 cut(s) | 13, 115, 655, 1018, 1133 |
| BspACI | CCGC | 5 cut(s) | 133, 374, 693, 805, 1112 |
| BspANI | GGCC | 1 cut(s) | 1161 |
| BspCNI | CTCAG | 1 cut(s) | 514 |
| BspFNI | CGCG | 5 cut(s) | 253, 255, 372, 374, 764 |
| BspLI | GGNNCC | 2 cut(s) | 945, 1110 |
| BspPI | GGATC | 3 cut(s) | 110, 650, 1013 |
| BspT104I | TTCGAA | 1 cut(s) | 475 |
| BsrDI | GCAATG | 1 cut(s) | 101 |
| BsrI | ACTGG | 1 cut(s) | 532 |
| BssECI | CCNNGG | 3 cut(s) | 299, 562, 930 |
| BssMI | GATC | 5 cut(s) | 13, 115, 655, 1018, 1133 |
| BssNI | GRCGYC | 2 cut(s) | 227, 799 |
| BssT1I | CCWWGG | 1 cut(s) | 299 |
| Bst2UI | CCWGG | 2 cut(s) | 564, 931 |
| Bst4CI | ACNGT | 3 cut(s) | 223, 430, 505 |
| Bst6I | CTCTTC | 1 cut(s) | 978 |
| BstACI | GRCGYC | 2 cut(s) | 227, 799 |
| BstBI | TTCGAA | 1 cut(s) | 475 |
| BstC8I | GCNNGC | 1 cut(s) | 641 |
| BstDEI | CTNAG | 7 cut(s) | 200, 287, 491, 522, 570, 1229, 1238 |
| BstF5I | GGATG | 4 cut(s) | 211, 630, 1039, 1219 |
| BstFNI | CGCG | 5 cut(s) | 253, 255, 372, 374, 764 |
| BstHHI | GCGC | 2 cut(s) | 255, 374 |
| BstKTI | GATC | 5 cut(s) | 16, 118, 658, 1021, 1136 |
| BstMAI | GTCTC | 1 cut(s) | 518 |
| BstMBI | GATC | 5 cut(s) | 13, 115, 655, 1018, 1133 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 564, 805, 1054 |
| BstNI | CCWGG | 2 cut(s) | 564, 931 |
| BstNSI | RCATGY | 1 cut(s) | 1206 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 194 |
| BstSCI | CCNGG | 2 cut(s) | 562, 929 |
| BstUI | CGCG | 5 cut(s) | 253, 255, 372, 374, 764 |
| BstV1I | GCAGC | 2 cut(s) | 407, 676 |
| Bsu36I | CCTNAGG | 1 cut(s) | 200 |
| BsuRI | GGCC | 1 cut(s) | 1161 |
| BtsCI | GGATG | 4 cut(s) | 211, 630, 1039, 1219 |
| BtsIMutI | CAGTG | 1 cut(s) | 80 |
| Cac8I | GCNNGC | 1 cut(s) | 641 |
| CfoI | GCGC | 2 cut(s) | 255, 374 |
| Cfr13I | GGNCC | 2 cut(s) | 196, 628 |
| CseI | GACGC | 4 cut(s) | 313, 331, 770, 788 |
| Csp6I | GTAC | 4 cut(s) | 140, 448, 454, 1083 |
| CviAII | CATG | 5 cut(s) | 670, 1058, 1071, 1203, 1305 |
| CviQI | GTAC | 4 cut(s) | 140, 448, 454, 1083 |
| DdeI | CTNAG | 7 cut(s) | 200, 287, 491, 522, 570, 1229, 1238 |
| DpnI | GATC | 5 cut(s) | 15, 117, 657, 1020, 1135 |
| DpnII | GATC | 5 cut(s) | 13, 115, 655, 1018, 1133 |
| DraI | TTTAAA | 1 cut(s) | 606 |
| EaeI | YGGCCR | 1 cut(s) | 1159 |
| Eam1104I | CTCTTC | 1 cut(s) | 978 |
| EarI | CTCTTC | 1 cut(s) | 978 |
| Eco130I | CCWWGG | 1 cut(s) | 299 |
| Eco24I | GRGCYC | 1 cut(s) | 381 |
| Eco32I | GATATC | 1 cut(s) | 184 |
| Eco47I | GGWCC | 2 cut(s) | 196, 628 |
| Eco57I | CTGAAG | 1 cut(s) | 432 |
| Eco81I | CCTNAGG | 1 cut(s) | 200 |
| EcoO109I | RGGNCCY | 1 cut(s) | 196 |
| EcoRII | CCWGG | 2 cut(s) | 562, 929 |
| EcoRV | GATATC | 1 cut(s) | 184 |
| EcoT14I | CCWWGG | 1 cut(s) | 299 |
| EcoT38I | GRGCYC | 1 cut(s) | 381 |
| ErhI | CCWWGG | 1 cut(s) | 299 |
| FaeI | CATG | 5 cut(s) | 673, 1061, 1074, 1206, 1308 |
| FaqI | GGGAC | 2 cut(s) | 288, 1104 |
| FatI | CATG | 5 cut(s) | 669, 1057, 1070, 1202, 1304 |
| FauI | CCCGC | 1 cut(s) | 367 |
| FauNDI | CATATG | 1 cut(s) | 383 |
| FblI | GTMKAC | 1 cut(s) | 49 |
| Fnu4HI | GCNGC | 5 cut(s) | 421, 690, 693, 806, 1112 |
| FokI | GGATG | 4 cut(s) | 218, 637, 1046, 1226 |
| FriOI | GRGCYC | 1 cut(s) | 381 |
| Fsp4HI | GCNGC | 5 cut(s) | 421, 690, 693, 806, 1112 |
| FspBI | CTAG | 3 cut(s) | 782, 1002, 1175 |
| GlaI | GCGC | 2 cut(s) | 254, 373 |
| GluI | GCNGC | 5 cut(s) | 421, 690, 693, 806, 1112 |
| HaeIII | GGCC | 1 cut(s) | 1161 |
| HapII | CCGG | 1 cut(s) | 828 |
| HgaI | GACGC | 4 cut(s) | 313, 331, 770, 788 |
| HhaI | GCGC | 2 cut(s) | 255, 374 |
| Hin1I | GRCGYC | 2 cut(s) | 227, 799 |
| Hin1II | CATG | 5 cut(s) | 673, 1061, 1074, 1206, 1308 |
| Hin6I | GCGC | 2 cut(s) | 253, 372 |
| HinP1I | GCGC | 2 cut(s) | 253, 372 |
| HincII | GTYRAC | 3 cut(s) | 50, 146, 706 |
| HindII | GTYRAC | 3 cut(s) | 50, 146, 706 |
| HindIII | AAGCTT | 1 cut(s) | 358 |
| HinfI | GANTC | 6 cut(s) | 161, 351, 468, 743, 824, 891 |
| HpaII | CCGG | 1 cut(s) | 828 |
| HphI | GGTGA | 5 cut(s) | 122, 542, 581, 752, 1028 |
| Hpy166II | GTNNAC | 3 cut(s) | 50, 146, 706 |
| Hpy188I | TCNGA | 5 cut(s) | 115, 166, 238, 356, 523 |
| Hpy188III | TCNNGA | 2 cut(s) | 187, 818 |
| Hpy8I | GTNNAC | 3 cut(s) | 50, 146, 706 |
| Hpy99I | CGWCG | 2 cut(s) | 232, 325 |
| HpyAV | CCTTC | 1 cut(s) | 482 |
| HpyCH4III | ACNGT | 3 cut(s) | 223, 430, 505 |
| HpyCH4IV | ACGT | 4 cut(s) | 142, 227, 310, 1077 |
| HpyCH4V | TGCA | 4 cut(s) | 78, 423, 1048, 1074 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 564, 805, 1054 |
| HpyF3I | CTNAG | 7 cut(s) | 200, 287, 491, 522, 570, 1229, 1238 |
| HpySE526I | ACGT | 4 cut(s) | 142, 227, 310, 1077 |
| Hsp92I | GRCGYC | 2 cut(s) | 227, 799 |
| Hsp92II | CATG | 5 cut(s) | 673, 1061, 1074, 1206, 1308 |
| HspAI | GCGC | 2 cut(s) | 253, 372 |
| Kzo9I | GATC | 5 cut(s) | 13, 115, 655, 1018, 1133 |
| LmnI | GCTCC | 2 cut(s) | 563, 1108 |
| Lsp1109I | GCAGC | 2 cut(s) | 407, 676 |
| LweI | GCATC | 1 cut(s) | 1057 |
| MaeI | CTAG | 3 cut(s) | 782, 1002, 1175 |
| MaeII | ACGT | 4 cut(s) | 142, 227, 310, 1077 |
| MaeIII | GTNAC | 2 cut(s) | 223, 482 |
| MalI | GATC | 5 cut(s) | 15, 117, 657, 1020, 1135 |
| MboI | GATC | 5 cut(s) | 13, 115, 655, 1018, 1133 |
| MboII | GAAGA | 5 cut(s) | 8, 425, 947, 995, 1277 |
| MhlI | GDGCHC | 1 cut(s) | 381 |
| MluI | ACGCGT | 1 cut(s) | 762 |
| MlyI | GAGTC | 1 cut(s) | 900 |
| MnlI | CCTC | 3 cut(s) | 30, 526, 788 |
| MroXI | GAANNNNTTC | 1 cut(s) | 942 |
| MseI | TTAA | 6 cut(s) | 335, 438, 605, 885, 1199, 1312 |
| MspI | CCGG | 1 cut(s) | 828 |
| MspR9I | CCNGG | 2 cut(s) | 564, 931 |
| MvaI | CCWGG | 2 cut(s) | 564, 931 |
| MvnI | CGCG | 5 cut(s) | 253, 255, 372, 374, 764 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 564, 805, 1054 |
| NdeI | CATATG | 1 cut(s) | 383 |
| NdeII | GATC | 5 cut(s) | 13, 115, 655, 1018, 1133 |
| NlaIII | CATG | 5 cut(s) | 673, 1061, 1074, 1206, 1308 |
| NlaIV | GGNNCC | 2 cut(s) | 945, 1110 |
| NmuCI | GTSAC | 2 cut(s) | 223, 482 |
| NspI | RCATGY | 1 cut(s) | 1206 |
| NspV | TTCGAA | 1 cut(s) | 475 |
| PciI | ACATGT | 1 cut(s) | 1202 |
| PdmI | GAANNNNTTC | 1 cut(s) | 942 |
| PfeI | GAWTC | 5 cut(s) | 161, 351, 468, 743, 824 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 96, 1028 |
| PkrI | GCNGC | 5 cut(s) | 422, 691, 694, 807, 1113 |
| PleI | GAGTC | 1 cut(s) | 899 |
| PpsI | GAGTC | 1 cut(s) | 899 |
| PpuMI | RGGWCCY | 1 cut(s) | 196 |
| PscI | ACATGT | 1 cut(s) | 1202 |
| PshAI | GACNNNNGTC | 1 cut(s) | 194 |
| PshBI | ATTAAT | 1 cut(s) | 885 |
| Psp1406I | AACGTT | 1 cut(s) | 1077 |
| Psp5II | RGGWCCY | 1 cut(s) | 196 |
| Psp6I | CCWGG | 2 cut(s) | 562, 929 |
| PspGI | CCWGG | 2 cut(s) | 562, 929 |
| PspN4I | GGNNCC | 2 cut(s) | 945, 1110 |
| PspPI | GGNCC | 2 cut(s) | 196, 628 |
| PspPPI | RGGWCCY | 1 cut(s) | 196 |
| RsaI | GTAC | 4 cut(s) | 141, 449, 455, 1084 |
| RsaNI | GTAC | 4 cut(s) | 140, 448, 454, 1083 |
| SalI | GTCGAC | 1 cut(s) | 48 |
| SaqAI | TTAA | 6 cut(s) | 335, 438, 605, 885, 1199, 1312 |
| SatI | GCNGC | 5 cut(s) | 421, 690, 693, 806, 1112 |
| Sau3AI | GATC | 5 cut(s) | 13, 115, 655, 1018, 1133 |
| Sau96I | GGNCC | 2 cut(s) | 196, 628 |
| SchI | GAGTC | 1 cut(s) | 900 |
| ScrFI | CCNGG | 2 cut(s) | 564, 931 |
| SduI | GDGCHC | 1 cut(s) | 381 |
| SfaNI | GCATC | 1 cut(s) | 1057 |
| SfuI | TTCGAA | 1 cut(s) | 475 |
| SinI | GGWCC | 2 cut(s) | 196, 628 |
| SsiI | CCGC | 5 cut(s) | 133, 374, 693, 805, 1112 |
| SspI | AATATT | 1 cut(s) | 883 |
| SspMI | CTAG | 3 cut(s) | 782, 1002, 1175 |
| StyD4I | CCNGG | 2 cut(s) | 562, 929 |
| StyI | CCWWGG | 1 cut(s) | 299 |
| TaaI | ACNGT | 3 cut(s) | 223, 430, 505 |
| TaiI | ACGT | 4 cut(s) | 145, 230, 313, 1080 |
| TaqI | TCGA | 5 cut(s) | 49, 230, 349, 475, 793 |
| TatI | WGTACW | 1 cut(s) | 447 |
| TauI | GCSGC | 3 cut(s) | 695, 808, 1114 |
| TfiI | GAWTC | 5 cut(s) | 161, 351, 468, 743, 824 |
| Tru1I | TTAA | 6 cut(s) | 335, 438, 605, 885, 1199, 1312 |
| Tru9I | TTAA | 6 cut(s) | 335, 438, 605, 885, 1199, 1312 |
| TscAI | CASTG | 1 cut(s) | 80 |
| TseFI | GTSAC | 2 cut(s) | 223, 482 |
| TseI | GCWGC | 2 cut(s) | 420, 689 |
| Tsp45I | GTSAC | 2 cut(s) | 223, 482 |
| TspDTI | ATGAA | 4 cut(s) | 686, 718, 802, 1293 |
| TspGWI | ACGGA | 3 cut(s) | 458, 674, 1121 |
| TspRI | CASTG | 1 cut(s) | 80 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 96, 1028 |
| VpaK11BI | GGWCC | 2 cut(s) | 196, 628 |
| VspI | ATTAAT | 1 cut(s) | 885 |
| XapI | RAATTY | 4 cut(s) | 434, 698, 734, 835 |
| XceI | RCATGY | 1 cut(s) | 1206 |
| XmiI | GTMKAC | 1 cut(s) | 49 |
| XmnI | GAANNNNTTC | 1 cut(s) | 942 |
| XspI | CTAG | 3 cut(s) | 782, 1002, 1175 |
| ZraI | GACGTC | 1 cut(s) | 228 |