transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 446 |
| AciI | CCGC | 2 cut(s) | 269, 580 |
| AclWI | GGATC | 3 cut(s) | 123, 337, 501 |
| AcoI | YGGCCR | 1 cut(s) | 417 |
| AfaI | GTAC | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 265 |
| AgsI | TTSAA | 4 cut(s) | 285, 370, 434, 566 |
| AjnI | CCWGG | 2 cut(s) | 402, 414 |
| AluBI | AGCT | 3 cut(s) | 134, 455, 549 |
| AluI | AGCT | 3 cut(s) | 134, 455, 549 |
| Alw26I | GTCTC | 2 cut(s) | 43, 588 |
| AlwI | GGATC | 3 cut(s) | 123, 337, 501 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 388 |
| AoxI | GGCC | 2 cut(s) | 400, 417 |
| ApeKI | GCWGC | 1 cut(s) | 157 |
| AsuC2I | CCSGG | 1 cut(s) | 127 |
| AsuHPI | GGTGA | 1 cut(s) | 33 |
| AsuII | TTCGAA | 1 cut(s) | 488 |
| AsuNHI | GCTAGC | 1 cut(s) | 130 |
| BalI | TGGCCA | 1 cut(s) | 419 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 265, 297 |
| BbvI | GCAGC | 1 cut(s) | 169 |
| BccI | CCATC | 3 cut(s) | 268, 290, 548 |
| BceAI | ACGGC | 1 cut(s) | 190 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 468, 502 |
| BciT130I | CCWGG | 2 cut(s) | 404, 416 |
| BcnI | CCSGG | 1 cut(s) | 127 |
| BcoDI | GTCTC | 2 cut(s) | 43, 588 |
| BfaI | CTAG | 3 cut(s) | 131, 483, 601 |
| BfmI | CTRYAG | 1 cut(s) | 474 |
| BisI | GCNGC | 1 cut(s) | 158 |
| BlsI | GCNGC | 1 cut(s) | 159 |
| Bme1390I | CCNGG | 3 cut(s) | 127, 404, 416 |
| BmiI | GGNNCC | 1 cut(s) | 91 |
| BmrFI | CCNGG | 3 cut(s) | 127, 404, 416 |
| BmsI | GCATC | 4 cut(s) | 177, 348, 432, 488 |
| BmtI | GCTAGC | 1 cut(s) | 134 |
| Bpu14I | TTCGAA | 1 cut(s) | 488 |
| BpuEI | CTTGAG | 3 cut(s) | 328, 342, 522 |
| BpuMI | CCSGG | 1 cut(s) | 127 |
| Bsa29I | ATCGAT | 1 cut(s) | 505 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 265 |
| Bse118I | RCCGGY | 1 cut(s) | 568 |
| Bse1I | ACTGG | 1 cut(s) | 117 |
| Bse3DI | GCAATG | 2 cut(s) | 54, 120 |
| BseBI | CCWGG | 2 cut(s) | 404, 416 |
| BseCI | ATCGAT | 1 cut(s) | 505 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseGI | GGATG | 2 cut(s) | 322, 445 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 265 |
| BseMI | GCAATG | 2 cut(s) | 54, 120 |
| BseMII | CTCAG | 1 cut(s) | 84 |
| BseNI | ACTGG | 1 cut(s) | 117 |
| BseXI | GCAGC | 1 cut(s) | 169 |
| BsgI | GTGCAG | 1 cut(s) | 176 |
| Bsh1236I | CGCG | 1 cut(s) | 446 |
| BshFI | GGCC | 2 cut(s) | 402, 419 |
| BshVI | ATCGAT | 1 cut(s) | 505 |
| BsiSI | CCGG | 2 cut(s) | 126, 569 |
| BslFI | GGGAC | 1 cut(s) | 397 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 265 |
| BsmAI | GTCTC | 2 cut(s) | 43, 588 |
| BsmBI | CGTCTC | 1 cut(s) | 588 |
| BsmFI | GGGAC | 1 cut(s) | 397 |
| BsnI | GGCC | 2 cut(s) | 402, 419 |
| Bsp119I | TTCGAA | 1 cut(s) | 488 |
| Bsp143I | GATC | 3 cut(s) | 115, 329, 506 |
| Bsp68I | TCGCGA | 1 cut(s) | 446 |
| BspACI | CCGC | 2 cut(s) | 269, 580 |
| BspANI | GGCC | 2 cut(s) | 402, 419 |
| BspCNI | CTCAG | 1 cut(s) | 83 |
| BspDI | ATCGAT | 1 cut(s) | 505 |
| BspFNI | CGCG | 1 cut(s) | 446 |
| BspHI | TCATGA | 1 cut(s) | 19 |
| BspLI | GGNNCC | 1 cut(s) | 91 |
| BspOI | GCTAGC | 1 cut(s) | 134 |
| BspPI | GGATC | 3 cut(s) | 123, 337, 501 |
| BspT104I | TTCGAA | 1 cut(s) | 488 |
| BsrDI | GCAATG | 2 cut(s) | 54, 120 |
| BsrFI | RCCGGY | 1 cut(s) | 568 |
| BsrI | ACTGG | 1 cut(s) | 117 |
| BssAI | RCCGGY | 1 cut(s) | 568 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| BssMI | GATC | 3 cut(s) | 115, 329, 506 |
| Bst2UI | CCWGG | 2 cut(s) | 404, 416 |
| Bst4CI | ACNGT | 3 cut(s) | 97, 289, 461 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 388 |
| BstBI | TTCGAA | 1 cut(s) | 488 |
| BstC8I | GCNNGC | 4 cut(s) | 132, 384, 400, 421 |
| BstDEI | CTNAG | 1 cut(s) | 70 |
| BstF5I | GGATG | 2 cut(s) | 322, 445 |
| BstFNI | CGCG | 1 cut(s) | 446 |
| BstKTI | GATC | 3 cut(s) | 118, 332, 509 |
| BstMAI | GTCTC | 2 cut(s) | 43, 588 |
| BstMBI | GATC | 3 cut(s) | 115, 329, 506 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 131, 388, 452 |
| BstNI | CCWGG | 2 cut(s) | 404, 416 |
| BstNSI | RCATGY | 1 cut(s) | 500 |
| BstSCI | CCNGG | 3 cut(s) | 125, 402, 414 |
| BstSFI | CTRYAG | 1 cut(s) | 474 |
| BstUI | CGCG | 1 cut(s) | 446 |
| BstV1I | GCAGC | 1 cut(s) | 169 |
| BstX2I | RGATCY | 1 cut(s) | 329 |
| BstYI | RGATCY | 1 cut(s) | 329 |
| Bsu15I | ATCGAT | 1 cut(s) | 505 |
| BsuRI | GGCC | 2 cut(s) | 402, 419 |
| BsuTUI | ATCGAT | 1 cut(s) | 505 |
| BtsCI | GGATG | 2 cut(s) | 322, 445 |
| BtsI | GCAGTG | 1 cut(s) | 386 |
| BtsIMutI | CAGTG | 5 cut(s) | 78, 93, 110, 386, 466 |
| BtuMI | TCGCGA | 1 cut(s) | 446 |
| Cac8I | GCNNGC | 4 cut(s) | 132, 384, 400, 421 |
| CaiI | CAGNNNCTG | 1 cut(s) | 388 |
| CciI | TCATGA | 1 cut(s) | 19 |
| Cfr10I | RCCGGY | 1 cut(s) | 568 |
| ClaI | ATCGAT | 1 cut(s) | 505 |
| CseI | GACGC | 1 cut(s) | 388 |
| Csp6I | GTAC | 1 cut(s) | 194 |
| CviAII | CATG | 4 cut(s) | 20, 238, 497, 511 |
| CviQI | GTAC | 1 cut(s) | 194 |
| DdeI | CTNAG | 1 cut(s) | 70 |
| DpnI | GATC | 3 cut(s) | 117, 331, 508 |
| DpnII | GATC | 3 cut(s) | 115, 329, 506 |
| EaeI | YGGCCR | 1 cut(s) | 417 |
| EcoRII | CCWGG | 2 cut(s) | 402, 414 |
| Esp3I | CGTCTC | 1 cut(s) | 588 |
| FaeI | CATG | 4 cut(s) | 23, 241, 500, 514 |
| FaiI | YATR | 7 cut(s) | 21, 239, 275, 324, 498, 512, 576 |
| FaqI | GGGAC | 1 cut(s) | 397 |
| FatI | CATG | 4 cut(s) | 19, 237, 496, 510 |
| FauI | CCCGC | 1 cut(s) | 262 |
| Fnu4HI | GCNGC | 1 cut(s) | 158 |
| FokI | GGATG | 2 cut(s) | 329, 452 |
| Fsp4HI | GCNGC | 1 cut(s) | 158 |
| FspBI | CTAG | 3 cut(s) | 131, 483, 601 |
| GluI | GCNGC | 1 cut(s) | 158 |
| HaeIII | GGCC | 2 cut(s) | 402, 419 |
| HapII | CCGG | 2 cut(s) | 126, 569 |
| HgaI | GACGC | 1 cut(s) | 388 |
| Hin1II | CATG | 4 cut(s) | 23, 241, 500, 514 |
| HinfI | GANTC | 4 cut(s) | 77, 176, 215, 448 |
| HpaII | CCGG | 2 cut(s) | 126, 569 |
| HphI | GGTGA | 1 cut(s) | 33 |
| Hpy166II | GTNNAC | 2 cut(s) | 103, 302 |
| Hpy188I | TCNGA | 5 cut(s) | 82, 234, 295, 378, 587 |
| Hpy188III | TCNNGA | 2 cut(s) | 20, 445 |
| Hpy8I | GTNNAC | 2 cut(s) | 103, 302 |
| HpyAV | CCTTC | 1 cut(s) | 484 |
| HpyCH4III | ACNGT | 3 cut(s) | 97, 289, 461 |
| HpyCH4V | TGCA | 4 cut(s) | 157, 211, 391, 500 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 131, 388, 452 |
| HpyF3I | CTNAG | 1 cut(s) | 70 |
| Hsp92II | CATG | 4 cut(s) | 23, 241, 500, 514 |
| Kzo9I | GATC | 3 cut(s) | 115, 329, 506 |
| LmnI | GCTCC | 1 cut(s) | 57 |
| Lsp1109I | GCAGC | 1 cut(s) | 169 |
| LweI | GCATC | 4 cut(s) | 177, 348, 432, 488 |
| MaeI | CTAG | 3 cut(s) | 131, 483, 601 |
| MalI | GATC | 3 cut(s) | 117, 331, 508 |
| MboI | GATC | 3 cut(s) | 115, 329, 506 |
| MboII | GAAGA | 1 cut(s) | 273 |
| MflI | RGATCY | 1 cut(s) | 329 |
| MlsI | TGGCCA | 1 cut(s) | 419 |
| MluCI | AATT | 1 cut(s) | 254 |
| MluNI | TGGCCA | 1 cut(s) | 419 |
| Mox20I | TGGCCA | 1 cut(s) | 419 |
| MscI | TGGCCA | 1 cut(s) | 419 |
| Msp20I | TGGCCA | 1 cut(s) | 419 |
| MspI | CCGG | 2 cut(s) | 126, 569 |
| MspR9I | CCNGG | 3 cut(s) | 127, 404, 416 |
| MvaI | CCWGG | 2 cut(s) | 404, 416 |
| MvnI | CGCG | 1 cut(s) | 446 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 131, 388, 452 |
| NciI | CCSGG | 1 cut(s) | 127 |
| NdeII | GATC | 3 cut(s) | 115, 329, 506 |
| NheI | GCTAGC | 1 cut(s) | 130 |
| NlaIII | CATG | 4 cut(s) | 23, 241, 500, 514 |
| NlaIV | GGNNCC | 1 cut(s) | 91 |
| NruI | TCGCGA | 1 cut(s) | 446 |
| NspI | RCATGY | 1 cut(s) | 500 |
| NspV | TTCGAA | 1 cut(s) | 488 |
| PagI | TCATGA | 1 cut(s) | 19 |
| PfeI | GAWTC | 4 cut(s) | 77, 176, 215, 448 |
| PkrI | GCNGC | 1 cut(s) | 159 |
| Psp6I | CCWGG | 2 cut(s) | 402, 414 |
| PspGI | CCWGG | 2 cut(s) | 402, 414 |
| PspN4I | GGNNCC | 1 cut(s) | 91 |
| PstNI | CAGNNNCTG | 1 cut(s) | 388 |
| PsuI | RGATCY | 1 cut(s) | 329 |
| RruI | TCGCGA | 1 cut(s) | 446 |
| RsaI | GTAC | 1 cut(s) | 195 |
| RsaNI | GTAC | 1 cut(s) | 194 |
| SatI | GCNGC | 1 cut(s) | 158 |
| Sau3AI | GATC | 3 cut(s) | 115, 329, 506 |
| ScrFI | CCNGG | 3 cut(s) | 127, 404, 416 |
| SetI | ASST | 4 cut(s) | 19, 136, 457, 551 |
| SfaNI | GCATC | 4 cut(s) | 177, 348, 432, 488 |
| SfcI | CTRYAG | 1 cut(s) | 474 |
| SfuI | TTCGAA | 1 cut(s) | 488 |
| SmlI | CTYRAG | 3 cut(s) | 343, 357, 537 |
| SmoI | CTYRAG | 3 cut(s) | 343, 357, 537 |
| Sse9I | AATT | 1 cut(s) | 254 |
| SsiI | CCGC | 2 cut(s) | 269, 580 |
| SspMI | CTAG | 3 cut(s) | 131, 483, 601 |
| StyD4I | CCNGG | 3 cut(s) | 125, 402, 414 |
| TaaI | ACNGT | 3 cut(s) | 97, 289, 461 |
| TaqI | TCGA | 3 cut(s) | 451, 488, 505 |
| TasI | AATT | 1 cut(s) | 254 |
| TfiI | GAWTC | 4 cut(s) | 77, 176, 215, 448 |
| TscAI | CASTG | 5 cut(s) | 78, 100, 117, 393, 466 |
| TseI | GCWGC | 1 cut(s) | 157 |
| TspDTI | ATGAA | 3 cut(s) | 17, 333, 527 |
| TspRI | CASTG | 5 cut(s) | 78, 100, 117, 393, 466 |
| XceI | RCATGY | 1 cut(s) | 500 |
| XspI | CTAG | 3 cut(s) | 131, 483, 601 |