FvH4_6g03182

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000216
Physical Location & Seq
Reverse (-)
1776732 .. 1780213
3482 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03182.t1

Sequence Viewer

Length: 585 bp
ATGGACACAGGACCGACCCTGCAAGCAATGTATTGCTCTTCCTACCGCCCCTCAATGCCACCAAGCCGATGTACACGTGGGGTTCCTATGCGATTCCTACCATATAGGTGCAAGGTTGTTCGAATTCTCGAATGTGAAAAAGAACCTGCATTATTCAAGGTGGAGATCTTCTCTTCCGAAACCTGTGAATGGACACAAGCAGTAGTTCCATTCCCGCAAAGGCTTACATATGATGATGTTAGAAGCAGTGTCGACAATGTAGGCATTGCCTGCAATGGAACGTTTGATGCGGATCAGGACTTGAAAGAAGATGATCATGAGGTGGATGGAGTCGGAGGCAAAATTGTGAAATGGTGTTTGAAAGAGAATCTAGTCCTGAACGAAGCAATGTTCGCACGTCCAACCCGCTTCTTCTGGACCTTCGATGTCATTACTCAAACTTCCGGCGACGCCCATTCTCTCGCCGGATACCGGTCTCTCATTACTTCAAAAACCCATACAAAGTTCGCCGAACCACCGCCAAATACCATGCCTGGCCATCTCAATCCGTTCAGCACGAAGAGAGATACGCTATGTGTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

195

Amino Acids

21.89

Weight (kDa)

6.09

Isoelectric Point (pI)

41.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 154
AccI GTMKAC 1 cut(s) 252
AciI CCGC 5 cut(s) 46, 215, 290, 406, 518
AclI AACGTT 1 cut(s) 281
AclWI GGATC 1 cut(s) 300
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 1 cut(s) 123
AcvI CACGTG 1 cut(s) 77
AcyI GRCGYC 1 cut(s) 450
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 189, 471
AflIII ACRYGT 1 cut(s) 74
AgeI ACCGGT 1 cut(s) 471
AgsI TTSAA 4 cut(s) 157, 304, 361, 489
AjiI CACGTC 1 cut(s) 398
AjnI CCWGG 1 cut(s) 532
Alw26I GTCTC 1 cut(s) 480
AlwI GGATC 1 cut(s) 300
AoxI GGCC 1 cut(s) 535
ApoI RAATTY 1 cut(s) 123
AsiGI ACCGGT 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 11, 417
AsuII TTCGAA 1 cut(s) 121
AvaII GGWCC 2 cut(s) 11, 417
BalI TGGCCA 1 cut(s) 537
BbrPI CACGTG 1 cut(s) 77
BccI CCATC 2 cut(s) 320, 546
BciT130I CCWGG 1 cut(s) 534
BciVI GTATCC 1 cut(s) 461
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 480
BfaI CTAG 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 154
BfuI GTATCC 1 cut(s) 461
BglII AGATCT 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 534
Bme18I GGWCC 2 cut(s) 11, 417
BmgBI CACGTC 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 11, 417
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 534
BmsI GCATC 1 cut(s) 277
BplI GAGNNNNNCTC 2 cut(s) 155, 187
Bpu14I TTCGAA 1 cut(s) 121
BsaAI YACGTR 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 480
BsaWI WCCGGW 1 cut(s) 471
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 471
Bse118I RCCGGY 1 cut(s) 471
Bse3DI GCAATG 4 cut(s) 33, 264, 280, 393
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 1 cut(s) 534
BseGI GGATG 1 cut(s) 331
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 189, 471
BseMI GCAATG 4 cut(s) 33, 264, 280, 393
BshFI GGCC 1 cut(s) 537
BshTI ACCGGT 1 cut(s) 471
BsiSI CCGG 3 cut(s) 444, 465, 472
BslI CCNNNNNNNGG 2 cut(s) 189, 471
BsmAI GTCTC 1 cut(s) 480
BsnI GGCC 1 cut(s) 537
Bso31I GGTCTC 1 cut(s) 480
Bsp119I TTCGAA 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 71
Bsp143I GATC 3 cut(s) 165, 292, 313
BspACI CCGC 5 cut(s) 46, 215, 290, 406, 518
BspANI GGCC 1 cut(s) 537
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 84
BspMI ACCTGC 1 cut(s) 154
BspPI GGATC 1 cut(s) 300
BspQI GCTCTTC 1 cut(s) 43
BspT104I TTCGAA 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 480
BsrDI GCAATG 4 cut(s) 33, 264, 280, 393
BsrFI RCCGGY 1 cut(s) 471
BsrGI TGTACA 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 471
BssMI GATC 3 cut(s) 165, 292, 313
BssNI GRCGYC 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 534
Bst6I CTCTTC 3 cut(s) 43, 178, 554
BstACI GRCGYC 1 cut(s) 450
BstAPI GCANNNNNTGC 1 cut(s) 270
BstAUI TGTACA 1 cut(s) 71
BstBAI YACGTR 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 24, 271
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 3 cut(s) 168, 295, 316
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 3 cut(s) 165, 292, 313
BstMWI GCNNNNNNNGC 2 cut(s) 270, 392
BstNI CCWGG 1 cut(s) 534
BstSCI CCNGG 1 cut(s) 532
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuI GTATCC 1 cut(s) 461
BsuRI GGCC 1 cut(s) 537
BtrI CACGTC 1 cut(s) 398
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 253
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 24, 271
CciI TCATGA 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 2 cut(s) 11, 417
CseI GACGC 1 cut(s) 458
Csp6I GTAC 1 cut(s) 72
CspAI ACCGGT 1 cut(s) 471
CviAII CATG 2 cut(s) 317, 529
CviJI RGCY 3 cut(s) 66, 223, 537
CviKI_1 RGCY 3 cut(s) 66, 223, 537
CviQI GTAC 1 cut(s) 72
DpnI GATC 3 cut(s) 167, 294, 315
DpnII GATC 3 cut(s) 165, 292, 313
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 3 cut(s) 43, 178, 554
EarI CTCTTC 3 cut(s) 43, 178, 554
Eco31I GGTCTC 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 11, 417
Eco72I CACGTG 1 cut(s) 77
EcoRI GAATTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 532
FaeI CATG 2 cut(s) 320, 532
FaiI YATR 9 cut(s) 89, 103, 105, 229, 231, 318, 498, 530, 574
FatI CATG 2 cut(s) 316, 528
FauI CCCGC 2 cut(s) 222, 413
FauNDI CATATG 1 cut(s) 229
FbaI TGATCA 1 cut(s) 313
FblI GTMKAC 1 cut(s) 252
FokI GGATG 1 cut(s) 338
FspBI CTAG 1 cut(s) 371
HaeIII GGCC 1 cut(s) 537
HapII CCGG 3 cut(s) 444, 465, 472
HgaI GACGC 1 cut(s) 458
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 2 cut(s) 320, 532
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 3 cut(s) 93, 330, 367
HpaII CCGG 3 cut(s) 444, 465, 472
Hpy166II GTNNAC 2 cut(s) 74, 253
Hpy188I TCNGA 2 cut(s) 178, 335
Hpy188III TCNNGA 5 cut(s) 128, 296, 317, 376, 415
Hpy8I GTNNAC 2 cut(s) 74, 253
Hpy99I CGWCG 1 cut(s) 452
HpyAV CCTTC 1 cut(s) 430
HpyCH4IV ACGT 3 cut(s) 76, 281, 397
HpyCH4V TGCA 4 cut(s) 22, 111, 149, 273
HpyF10VI GCNNNNNNNGC 2 cut(s) 270, 392
HpySE526I ACGT 3 cut(s) 76, 281, 397
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 2 cut(s) 320, 532
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 3 cut(s) 165, 292, 313
LguI GCTCTTC 1 cut(s) 43
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 371
MaeII ACGT 3 cut(s) 76, 281, 397
MalI GATC 3 cut(s) 167, 294, 315
MboI GATC 3 cut(s) 165, 292, 313
MboII GAAGA 6 cut(s) 30, 160, 165, 320, 403, 571
MflI RGATCY 1 cut(s) 165
MlsI TGGCCA 1 cut(s) 537
MluCI AATT 2 cut(s) 123, 342
MluNI TGGCCA 1 cut(s) 537
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 2 cut(s) 313, 425
MnlI CCTC 3 cut(s) 61, 313, 329
Mox20I TGGCCA 1 cut(s) 537
MscI TGGCCA 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 106
Msp20I TGGCCA 1 cut(s) 537
MspI CCGG 3 cut(s) 444, 465, 472
MspR9I CCNGG 1 cut(s) 534
MvaI CCWGG 1 cut(s) 534
MwoI GCNNNNNNNGC 2 cut(s) 270, 392
NdeI CATATG 1 cut(s) 229
NdeII GATC 3 cut(s) 165, 292, 313
NlaIII CATG 2 cut(s) 320, 532
NlaIV GGNNCC 1 cut(s) 84
NspV TTCGAA 1 cut(s) 121
PagI TCATGA 1 cut(s) 316
PciSI GCTCTTC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 93, 367
PinAI ACCGGT 1 cut(s) 471
PleI GAGTC 1 cut(s) 338
PmaCI CACGTG 1 cut(s) 77
PmlI CACGTG 1 cut(s) 77
PpsI GAGTC 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 77
Psp1406I AACGTT 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 532
PspCI CACGTG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 1 cut(s) 84
PspPI GGNCC 2 cut(s) 11, 417
PsuI RGATCY 1 cut(s) 165
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 106
SalI GTCGAC 1 cut(s) 251
SapI GCTCTTC 1 cut(s) 43
Sau3AI GATC 3 cut(s) 165, 292, 313
Sau96I GGNCC 2 cut(s) 11, 417
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 534
SfaNI GCATC 1 cut(s) 277
SfuI TTCGAA 1 cut(s) 121
SinI GGWCC 2 cut(s) 11, 417
SmiMI CAYNNNNRTG 1 cut(s) 106
Sse9I AATT 2 cut(s) 123, 342
SsiI CCGC 5 cut(s) 46, 215, 290, 406, 518
SspMI CTAG 1 cut(s) 371
StyD4I CCNGG 1 cut(s) 532
TaiI ACGT 3 cut(s) 79, 284, 400
TaqI TCGA 4 cut(s) 121, 129, 252, 423
TaqII GACCGA 1 cut(s) 28
TasI AATT 2 cut(s) 123, 342
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 2 cut(s) 93, 367
TscAI CASTG 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 537
TspRI CASTG 1 cut(s) 253
VpaK11BI GGWCC 2 cut(s) 11, 417
XapI RAATTY 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 252
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.