Rorug05G0378800

Shikimate O-hydroxycinnamoyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
51402949 .. 51424291
21343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0378800.1

Sequence Viewer

Length: 645 bp
ATGACGAAGAAGCGAAAACGCGAAATCGAAGAGGACTGCAGCAGGAAACGCCGCCGTATTGAAGACGGGTCCGTCCGTTCTGATGACTCCTATGAGATCGAGACTCATAAAGGGGAACCGCTAACACCACGTGGGAATTCGAAGTTGAAACGAAAGCGTCGTCGTGGTCCTCGCTGTTCCGAATGTGGTCTTCCCTGTAGCAACGCCTGTACCAGATATGTGCAGCCTCCTATACCAGAGGGATATGGTTACCTTCCATCGTCAATAGGCGTGGATACGAATGGTCACTACCATGAAGAGATTTCTGATTTGATTGCTTTCATGTATTGTGACCGTTGTGGCAAGAATGGTGACCACTGGGATGCCCATTGCCCAAATCCCATCAATGACCCTCCAGAACCAGAAGATCCTGCTGCTCGCCGTTTTTCGTGGAAGTATGTATTGAGGGATTTCAAAGGGAAACCGGAACCACCACGTAGGAAGGCAGTGAAATTGAAGGCTCCGATGTGTGAATATTGTGTTCGTCTCCGAAACCAAGCCAATGCTAGAACTGAAAAGCCTCCTTTACCGGAGGGATATGGTTACCTTCCTTCGTCAATAGGTGTGTATACGAATGGTCACTACCATGAAGAGATTTCTGGATGA

Protein Analysis

214

Amino Acids

24.57

Weight (kDa)

8.95

Isoelectric Point (pI)

74.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccI GTMKAC 1 cut(s) 608
AccII CGCG 1 cut(s) 21
AciI CCGC 2 cut(s) 52, 119
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 136
AcvI CACGTG 1 cut(s) 131
AdeI CACNNNGTG 1 cut(s) 131
AfaI GTAC 1 cut(s) 211
AgsI TTSAA 4 cut(s) 62, 148, 454, 496
Alw26I GTCTC 2 cut(s) 95, 530
AlwI GGATC 1 cut(s) 401
ApeKI GCWGC 3 cut(s) 39, 223, 413
ApoI RAATTY 1 cut(s) 136
ArsI GACNNNNNNTTYG 2 cut(s) 145, 177
AspS9I GGNCC 2 cut(s) 69, 167
AsuHPI GGTGA 1 cut(s) 362
AsuII TTCGAA 1 cut(s) 140
AvaII GGWCC 2 cut(s) 69, 167
BaeI ACNNNNGTAYC 2 cut(s) 193, 226
BbrPI CACGTG 1 cut(s) 131
BbsI GAAGAC 2 cut(s) 69, 182
BbvI GCAGC 3 cut(s) 51, 235, 400
BccI CCATC 2 cut(s) 265, 389
BceAI ACGGC 2 cut(s) 39, 405
BciVI GTATCC 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 95, 530
BfaI CTAG 1 cut(s) 546
BfmI CTRYAG 2 cut(s) 37, 196
BfuI GTATCC 1 cut(s) 268
BisI GCNGC 4 cut(s) 40, 52, 224, 414
BlsI GCNGC 4 cut(s) 41, 53, 225, 415
Bme18I GGWCC 2 cut(s) 69, 167
BmgT120I GGNCC 2 cut(s) 69, 167
BmiI GGNNCC 4 cut(s) 70, 117, 468, 501
BmrI ACTGGG 1 cut(s) 367
BmsI GCATC 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 367
BpiI GAAGAC 2 cut(s) 69, 182
BpmI CTGGAG 1 cut(s) 378
Bpu14I TTCGAA 1 cut(s) 140
BsaAI YACGTR 2 cut(s) 131, 476
BsaWI WCCGGW 2 cut(s) 463, 568
Bse1I ACTGG 1 cut(s) 362
Bse3DI GCAATG 1 cut(s) 367
BseGI GGATG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 367
BseNI ACTGG 1 cut(s) 362
BseXI GCAGC 3 cut(s) 51, 235, 400
BsgI GTGCAG 1 cut(s) 242
Bsh1236I CGCG 1 cut(s) 21
BsiSI CCGG 2 cut(s) 464, 569
BsmAI GTCTC 2 cut(s) 95, 530
BsmBI CGTCTC 1 cut(s) 530
Bsp119I TTCGAA 1 cut(s) 140
Bsp143I GATC 2 cut(s) 96, 406
BspACI CCGC 2 cut(s) 52, 119
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 4 cut(s) 70, 117, 468, 501
BspMAI CTGCAG 1 cut(s) 41
BspPI GGATC 1 cut(s) 401
BspT104I TTCGAA 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 367
BsrI ACTGG 1 cut(s) 362
BssMI GATC 2 cut(s) 96, 406
BssNAI GTATAC 1 cut(s) 609
Bst1107I GTATAC 1 cut(s) 609
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 3 cut(s) 24, 291, 624
BstBAI YACGTR 2 cut(s) 131, 476
BstBI TTCGAA 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 418
BstEII GGTNACC 3 cut(s) 248, 350, 581
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 1 cut(s) 21
BstKTI GATC 2 cut(s) 99, 409
BstMAI GTCTC 2 cut(s) 95, 530
BstMBI GATC 2 cut(s) 96, 406
BstMWI GCNNNNNNNGC 1 cut(s) 48
BstPI GGTNACC 3 cut(s) 248, 350, 581
BstSFI CTRYAG 2 cut(s) 37, 196
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 3 cut(s) 51, 235, 400
BstV2I GAAGAC 2 cut(s) 69, 182
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BstZ17I GTATAC 1 cut(s) 609
BsuI GTATCC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 355, 492
Cac8I GCNNGC 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 69, 167
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 210
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 3 cut(s) 293, 322, 626
CviJI RGCY 4 cut(s) 226, 500, 539, 559
CviKI_1 RGCY 4 cut(s) 226, 500, 539, 559
CviQI GTAC 1 cut(s) 210
DpnI GATC 2 cut(s) 98, 408
DpnII GATC 2 cut(s) 96, 406
DraIII CACNNNGTG 1 cut(s) 131
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
Eam1104I CTCTTC 3 cut(s) 24, 291, 624
EarI CTCTTC 3 cut(s) 24, 291, 624
Eco47I GGWCC 2 cut(s) 69, 167
Eco72I CACGTG 1 cut(s) 131
Eco91I GGTNACC 3 cut(s) 248, 350, 581
EcoO65I GGTNACC 3 cut(s) 248, 350, 581
EcoRI GAATTC 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 530
FaeI CATG 3 cut(s) 296, 325, 629
FatI CATG 3 cut(s) 292, 321, 625
FblI GTMKAC 1 cut(s) 608
Fnu4HI GCNGC 4 cut(s) 40, 52, 224, 414
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 4 cut(s) 40, 52, 224, 414
FspBI CTAG 1 cut(s) 546
GluI GCNGC 4 cut(s) 40, 52, 224, 414
GsuI CTGGAG 1 cut(s) 378
HapII CCGG 2 cut(s) 464, 569
HgaI GACGC 1 cut(s) 146
Hin1II CATG 3 cut(s) 296, 325, 629
HinfI GANTC 2 cut(s) 86, 103
HpaII CCGG 2 cut(s) 464, 569
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 1 cut(s) 609
Hpy188I TCNGA 5 cut(s) 82, 181, 307, 504, 530
Hpy188III TCNNGA 3 cut(s) 100, 395, 639
Hpy8I GTNNAC 1 cut(s) 609
Hpy99I CGWCG 2 cut(s) 162, 165
HpyAV CCTTC 5 cut(s) 263, 475, 490, 596, 600
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 2 cut(s) 130, 475
HpyCH4V TGCA 2 cut(s) 39, 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 48
HpySE526I ACGT 2 cut(s) 130, 475
Hsp92II CATG 3 cut(s) 296, 325, 629
Kzo9I GATC 2 cut(s) 96, 406
LmnI GCTCC 1 cut(s) 505
Lsp1109I GCAGC 3 cut(s) 51, 235, 400
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 546
MaeII ACGT 2 cut(s) 130, 475
MaeIII GTNAC 6 cut(s) 248, 284, 329, 350, 581, 617
MalI GATC 2 cut(s) 98, 408
MboI GATC 2 cut(s) 96, 406
MboII GAAGA 7 cut(s) 19, 41, 74, 182, 308, 416, 641
MflI RGATCY 1 cut(s) 406
MluCI AATT 2 cut(s) 136, 491
MlyI GAGTC 2 cut(s) 80, 97
MnlI CCTC 8 cut(s) 25, 180, 232, 237, 402, 438, 565, 570
MslI CAYNNNNRTG 3 cut(s) 291, 360, 624
MspI CCGG 2 cut(s) 464, 569
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 48
NdeII GATC 2 cut(s) 96, 406
NlaIII CATG 3 cut(s) 296, 325, 629
NlaIV GGNNCC 4 cut(s) 70, 117, 468, 501
NmuCI GTSAC 4 cut(s) 284, 329, 350, 617
NspV TTCGAA 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PkrI GCNGC 4 cut(s) 41, 53, 225, 415
PleI GAGTC 2 cut(s) 80, 97
PmaCI CACGTG 1 cut(s) 131
PmlI CACGTG 1 cut(s) 131
PpsI GAGTC 2 cut(s) 80, 97
Ppu21I YACGTR 2 cut(s) 131, 476
PspCI CACGTG 1 cut(s) 131
PspEI GGTNACC 3 cut(s) 248, 350, 581
PspN4I GGNNCC 4 cut(s) 70, 117, 468, 501
PspPI GGNCC 2 cut(s) 69, 167
PstI CTGCAG 1 cut(s) 41
PsuI RGATCY 1 cut(s) 406
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 3 cut(s) 291, 360, 624
SatI GCNGC 4 cut(s) 40, 52, 224, 414
Sau3AI GATC 2 cut(s) 96, 406
Sau96I GGNCC 2 cut(s) 69, 167
SchI GAGTC 2 cut(s) 80, 97
SetI ASST 5 cut(s) 133, 255, 478, 588, 604
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 2 cut(s) 37, 196
SfuI TTCGAA 1 cut(s) 140
SinI GGWCC 2 cut(s) 69, 167
SmiMI CAYNNNNRTG 3 cut(s) 291, 360, 624
Sse9I AATT 2 cut(s) 136, 491
SsiI CCGC 2 cut(s) 52, 119
SspI AATATT 1 cut(s) 515
SspMI CTAG 1 cut(s) 546
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 2 cut(s) 133, 478
TaqI TCGA 3 cut(s) 27, 99, 140
TasI AATT 2 cut(s) 136, 491
TauI GCSGC 1 cut(s) 54
TscAI CASTG 2 cut(s) 362, 492
TseFI GTSAC 4 cut(s) 284, 329, 350, 617
TseI GCWGC 3 cut(s) 39, 223, 413
Tsp45I GTSAC 4 cut(s) 284, 329, 350, 617
TspDTI ATGAA 3 cut(s) 309, 310, 642
TspGWI ACGGA 2 cut(s) 61, 65
TspRI CASTG 2 cut(s) 362, 492
VpaK11BI GGWCC 2 cut(s) 69, 167
XapI RAATTY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 608
XspI CTAG 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.