RLG00000021477

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000216
Physical Location & Seq
Forward (+)
75728238 .. 75730475
2238 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021477

Sequence Viewer

Length: 882 bp
ATGATAGATTTTGATCTAAACCTCCCTCCTGCTCCAGAACAAGGAGGAGCTGCTGTGGATGTGAGATCAGCAGCACCAAAATTGATGAATAATAGTATTGATGATCTTCCTGATGATGAATTTCTTGAAATCCTTTATCGACTTGCTTGCTATAAGTTTGTTGCTCAATGCAAGGGTGTCTCCAAGCGTTGGTGCAATATCTTGTCCGAACCTTCTTTTATTGGCGACTTTGTGCGTCTCAAAAGTGATAAGCAGTCACCAATTACACATTCTCTGCTGCATTATAGTGGAGTGGAATTCATCGGCAGATTGTCATTTTCCACCAAGCCGCTAACTCCATTCTCAAGCAGTATTGATCAACGCGATTACTACATCTGCAATCCATCCACAGTCCGATGGGTTCCTCTTCCTCCACCTCCTCAAGTCTACAGGTGCAGGGTGGTGAGATTAATTTGTCCTGAGGATCAGAGGAACGCATTTTCCAATGAATTTAAAGTGCAGATCTTCTCTTCAGAGACCGAAGTGTACAAAGGGTGCATGCGGATAATCGGGTATGATAGTGATACGCGTACTCTATCTGTTGTGGACTTGATCAATGATGAAGAAATCCACGAAGGAGTTGTCAAATTGTGTCCGGATCAGATGAGGGTTTATTCACTGAATGAAGAAATTATTACAAACCATGATACTGCTGTGATCTCAATTATAGGTTTCGACCCAGATAATGATGATATTTTGTATCTGGAAAGAATTGGAGACATTCTTAAGTGCAATATTCATACAAGGACATGGTCGACGGTTGATAAAATGACTCGAAATAGTGATGGCTTGTACCCGCTTGCTGTTCCATGGTGGCCGACACCGGTTCCCAGACTAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

294

Amino Acids

33.38

Weight (kDa)

5.03

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 189
AccI GTMKAC 2 cut(s) 426, 794
AccII CGCG 2 cut(s) 363, 568
AccIII TCCGGA 1 cut(s) 634
AciI CCGC 3 cut(s) 329, 541, 836
AclWI GGATC 2 cut(s) 471, 645
AcoI YGGCCR 1 cut(s) 854
AcsI RAATTY 3 cut(s) 119, 296, 488
AcuI CTGAAG 1 cut(s) 495
AfaI GTAC 3 cut(s) 527, 571, 833
AfiI CCNNNNNNNGG 2 cut(s) 41, 189
AflII CTTAAG 1 cut(s) 764
AflIII ACRYGT 1 cut(s) 566
AgeI ACCGGT 1 cut(s) 862
AgsI TTSAA 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 253, 285
AloI GAACNNNNNNTCC 2 cut(s) 464, 496
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 4 cut(s) 184, 242, 509, 750
AlwI GGATC 2 cut(s) 471, 645
Aor13HI TCCGGA 1 cut(s) 634
AoxI GGCC 1 cut(s) 854
ApeKI GCWGC 3 cut(s) 50, 71, 277
ApoI RAATTY 3 cut(s) 119, 296, 488
ArsI GACNNNNNNTTYG 2 cut(s) 606, 638
AseI ATTAAT 1 cut(s) 449
AsiGI ACCGGT 1 cut(s) 862
AsuHPI GGTGA 2 cut(s) 249, 454
AxyI CCTNAGG 1 cut(s) 459
BaeI ACNNNNGTAYC 2 cut(s) 678, 711
BbvI GCAGC 3 cut(s) 37, 83, 264
BccI CCATC 3 cut(s) 390, 391, 818
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BclI TGATCA 2 cut(s) 355, 591
BcoDI GTCTC 4 cut(s) 184, 242, 509, 750
BfaI CTAG 1 cut(s) 875
BfmI CTRYAG 1 cut(s) 427
BfrI CTTAAG 1 cut(s) 764
BglII AGATCT 1 cut(s) 501
BisI GCNGC 4 cut(s) 51, 72, 278, 329
BlsI GCNGC 4 cut(s) 52, 73, 279, 330
BmiI GGNNCC 2 cut(s) 402, 867
BpmI CTGGAG 1 cut(s) 18
BpuEI CTTGAG 2 cut(s) 328, 405
BsaBI GATNNNNATC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 848
BsaWI WCCGGW 2 cut(s) 634, 862
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 189
Bse118I RCCGGY 1 cut(s) 862
Bse21I CCTNAGG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 634
BseDI CCNNGG 1 cut(s) 848
BseGI GGATG 2 cut(s) 64, 383
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 41, 189
BseMII CTCAG 1 cut(s) 450
BseRI GAGGAG 2 cut(s) 60, 408
BseXI GCAGC 3 cut(s) 37, 83, 264
BsgI GTGCAG 2 cut(s) 454, 518
Bsh1236I CGCG 2 cut(s) 363, 568
BshFI GGCC 1 cut(s) 856
BshTI ACCGGT 1 cut(s) 862
BsiSI CCGG 2 cut(s) 635, 863
BslI CCNNNNNNNGG 2 cut(s) 41, 189
BsmAI GTCTC 4 cut(s) 184, 242, 509, 750
BsmBI CGTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 856
Bso31I GGTCTC 1 cut(s) 509
Bsp13I TCCGGA 1 cut(s) 634
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 9 cut(s) 13, 65, 103, 355, 463, 501, 591, 637, 696
Bsp19I CCATGG 1 cut(s) 848
BspACI CCGC 3 cut(s) 329, 541, 836
BspANI GGCC 1 cut(s) 856
BspCNI CTCAG 1 cut(s) 451
BspEI TCCGGA 1 cut(s) 634
BspFNI CGCG 2 cut(s) 363, 568
BspLI GGNNCC 2 cut(s) 402, 867
BspPI GGATC 2 cut(s) 471, 645
BspTI CTTAAG 1 cut(s) 764
BspTNI GGTCTC 1 cut(s) 509
BsrFI RCCGGY 1 cut(s) 862
BsrGI TGTACA 1 cut(s) 525
BssAI RCCGGY 1 cut(s) 862
BssECI CCNNGG 1 cut(s) 848
BssMI GATC 9 cut(s) 13, 65, 103, 355, 463, 501, 591, 637, 696
BssT1I CCWWGG 1 cut(s) 848
Bst4CI ACNGT 2 cut(s) 391, 799
Bst6I CTCTTC 2 cut(s) 411, 514
BstAFI CTTAAG 1 cut(s) 764
BstAUI TGTACA 1 cut(s) 525
BstC8I GCNNGC 3 cut(s) 148, 539, 840
BstDEI CTNAG 1 cut(s) 459
BstDSI CCRYGG 1 cut(s) 848
BstF5I GGATG 2 cut(s) 64, 383
BstFNI CGCG 2 cut(s) 363, 568
BstKTI GATC 9 cut(s) 16, 68, 106, 358, 466, 504, 594, 640, 699
BstMAI GTCTC 4 cut(s) 184, 242, 509, 750
BstMBI GATC 9 cut(s) 13, 65, 103, 355, 463, 501, 591, 637, 696
BstNSI RCATGY 1 cut(s) 541
BstSFI CTRYAG 1 cut(s) 427
BstUI CGCG 2 cut(s) 363, 568
BstV1I GCAGC 3 cut(s) 37, 83, 264
BstX2I RGATCY 1 cut(s) 501
BstYI RGATCY 1 cut(s) 501
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 1 cut(s) 856
BtgI CCRYGG 1 cut(s) 848
BtsCI GGATG 2 cut(s) 64, 383
BtsIMutI CAGTG 1 cut(s) 656
Cac8I GCNNGC 3 cut(s) 148, 539, 840
Cfr10I RCCGGY 1 cut(s) 862
CseI GACGC 1 cut(s) 224
Csp6I GTAC 3 cut(s) 526, 570, 832
CspAI ACCGGT 1 cut(s) 862
CviAII CATG 4 cut(s) 538, 683, 789, 849
CviJI RGCY 4 cut(s) 50, 328, 828, 856
CviKI_1 RGCY 4 cut(s) 50, 328, 828, 856
CviQI GTAC 3 cut(s) 526, 570, 832
DdeI CTNAG 1 cut(s) 459
DpnI GATC 9 cut(s) 15, 67, 105, 357, 465, 503, 593, 639, 698
DpnII GATC 9 cut(s) 13, 65, 103, 355, 463, 501, 591, 637, 696
DraI TTTAAA 1 cut(s) 493
EaeI YGGCCR 1 cut(s) 854
Eam1104I CTCTTC 2 cut(s) 411, 514
EarI CTCTTC 2 cut(s) 411, 514
Eco130I CCWWGG 1 cut(s) 848
Eco31I GGTCTC 1 cut(s) 509
Eco57I CTGAAG 1 cut(s) 495
Eco81I CCTNAGG 1 cut(s) 459
EcoRI GAATTC 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 848
ErhI CCWWGG 1 cut(s) 848
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 4 cut(s) 541, 686, 792, 852
FatI CATG 4 cut(s) 537, 682, 788, 848
FauI CCCGC 1 cut(s) 843
FbaI TGATCA 2 cut(s) 355, 591
FblI GTMKAC 2 cut(s) 426, 794
Fnu4HI GCNGC 4 cut(s) 51, 72, 278, 329
FokI GGATG 2 cut(s) 71, 370
Fsp4HI GCNGC 4 cut(s) 51, 72, 278, 329
FspBI CTAG 1 cut(s) 875
GluI GCNGC 4 cut(s) 51, 72, 278, 329
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 1 cut(s) 856
HapII CCGG 2 cut(s) 635, 863
HgaI GACGC 1 cut(s) 224
Hin1II CATG 4 cut(s) 541, 686, 792, 852
HincII GTYRAC 1 cut(s) 795
HindII GTYRAC 1 cut(s) 795
HinfI GANTC 1 cut(s) 811
HpaII CCGG 2 cut(s) 635, 863
HphI GGTGA 2 cut(s) 249, 454
Hpy166II GTNNAC 4 cut(s) 427, 526, 586, 795
Hpy188I TCNGA 5 cut(s) 208, 395, 468, 514, 642
Hpy188III TCNNGA 6 cut(s) 35, 110, 125, 458, 635, 743
Hpy8I GTNNAC 4 cut(s) 427, 526, 586, 795
Hpy99I CGWCG 1 cut(s) 799
HpyAV CCTTC 2 cut(s) 222, 608
HpyCH4III ACNGT 2 cut(s) 391, 799
HpyCH4V TGCA 8 cut(s) 171, 195, 280, 378, 435, 499, 537, 771
HpyF3I CTNAG 1 cut(s) 459
Hsp92II CATG 4 cut(s) 541, 686, 792, 852
Kpn2I TCCGGA 1 cut(s) 634
Ksp22I TGATCA 2 cut(s) 355, 591
Kzo9I GATC 9 cut(s) 13, 65, 103, 355, 463, 501, 591, 637, 696
LmnI GCTCC 2 cut(s) 37, 47
Lsp1109I GCAGC 3 cut(s) 37, 83, 264
MaeI CTAG 1 cut(s) 875
MaeIII GTNAC 1 cut(s) 255
MalI GATC 9 cut(s) 15, 67, 105, 357, 465, 503, 593, 639, 698
MboI GATC 9 cut(s) 13, 65, 103, 355, 463, 501, 591, 637, 696
MboII GAAGA 6 cut(s) 98, 398, 496, 501, 614, 677
MflI RGATCY 1 cut(s) 501
MluI ACGCGT 1 cut(s) 566
MlyI GAGTC 1 cut(s) 805
MroI TCCGGA 1 cut(s) 634
MseI TTAA 3 cut(s) 449, 492, 765
MslI CAYNNNNRTG 1 cut(s) 285
MspCI CTTAAG 1 cut(s) 764
MspI CCGG 2 cut(s) 635, 863
MvnI CGCG 2 cut(s) 363, 568
NcoI CCATGG 1 cut(s) 848
NdeII GATC 9 cut(s) 13, 65, 103, 355, 463, 501, 591, 637, 696
NlaIII CATG 4 cut(s) 541, 686, 792, 852
NlaIV GGNNCC 2 cut(s) 402, 867
NmuCI GTSAC 1 cut(s) 255
NspI RCATGY 1 cut(s) 541
PaeI GCATGC 1 cut(s) 541
PflFI GACNNNGTC 1 cut(s) 790
PflMI CCANNNNNTGG 1 cut(s) 189
PinAI ACCGGT 1 cut(s) 862
PkrI GCNGC 4 cut(s) 52, 73, 279, 330
PleI GAGTC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 805
PshBI ATTAAT 1 cut(s) 449
PspN4I GGNNCC 2 cut(s) 402, 867
PsuI RGATCY 1 cut(s) 501
PsyI GACNNNGTC 1 cut(s) 790
RsaI GTAC 3 cut(s) 527, 571, 833
RsaNI GTAC 3 cut(s) 526, 570, 832
RseI CAYNNNNRTG 1 cut(s) 285
SalI GTCGAC 1 cut(s) 793
SaqAI TTAA 3 cut(s) 449, 492, 765
SatI GCNGC 4 cut(s) 51, 72, 278, 329
Sau3AI GATC 9 cut(s) 13, 65, 103, 355, 463, 501, 591, 637, 696
SchI GAGTC 1 cut(s) 805
SetI ASST 6 cut(s) 24, 52, 214, 418, 434, 712
SfcI CTRYAG 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 3 cut(s) 343, 420, 764
SmoI CTYRAG 3 cut(s) 343, 420, 764
SphI GCATGC 1 cut(s) 541
SsiI CCGC 3 cut(s) 329, 541, 836
SspI AATATT 1 cut(s) 775
SspMI CTAG 1 cut(s) 875
StyI CCWWGG 1 cut(s) 848
TaaI ACNGT 2 cut(s) 391, 799
TaqI TCGA 4 cut(s) 139, 714, 794, 814
TaqII GACCGA 1 cut(s) 533
TatI WGTACW 1 cut(s) 525
TauI GCSGC 1 cut(s) 331
Tru1I TTAA 3 cut(s) 449, 492, 765
Tru9I TTAA 3 cut(s) 449, 492, 765
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 1 cut(s) 255
TseI GCWGC 3 cut(s) 50, 71, 277
Tsp45I GTSAC 1 cut(s) 255
TspDTI ATGAA 7 cut(s) 101, 132, 289, 501, 615, 678, 767
TspRI CASTG 1 cut(s) 663
Tth111I GACNNNGTC 1 cut(s) 790
Van91I CCANNNNNTGG 1 cut(s) 189
Vha464I CTTAAG 1 cut(s) 764
VspI ATTAAT 1 cut(s) 449
XapI RAATTY 3 cut(s) 119, 296, 488
XceI RCATGY 1 cut(s) 541
XmiI GTMKAC 2 cut(s) 426, 794
XspI CTAG 1 cut(s) 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.