pycom17g19130

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000216
Physical Location & Seq
Forward (+)
16757037 .. 16758628
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g19130.1

Sequence Viewer

Length: 546 bp
ATGGATCAGGCAACAGTAGCGCGGGCTGGGATCTGGGTTGCAGGTTCCTTCAGTGCTTGGGTTTCAGGTATGCGGGAGGGATGCAAGCGTTTTGACAATGGCGTTTTCAGATGGTGGTGCCAGACGGGACGGAACTGGGTTCGTCAGGACGTTCAAGACAGGCGTGAGATGGTGGTGGATTCGTCATTGCGGAGGGAACAGGAACAAACACAGCGGTGGGCGACAGCAGGGGCAGCGGCTGGTCGCTCGAGTTTCCATGGATTAAAAAACGAGCCAGTTGTGGTAGGCACGTATGATGACTTGATTTTGTGCGCCAATGGCTGGTATTATCAAAATGATTACTACCTACGCAATCCGTACGCCATGGAATGGGTTGCTCTTCCTCCACCCCCTACTCAATGCTTCAACATCGTGAAAACTCCTAATGATGTATTTAACTTTGATCCTGATGGACATTCATACGATTTCAACGTGGAGATTTTCTCTTCAGAGACTGGCAAATGGAGAGAGTTAGCTGTATCATCCCCACAAGGAATTTTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

182

Amino Acids

20.76

Weight (kDa)

5.4

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 117
AccB7I CCANNNNNTGG 2 cut(s) 321, 369
AccII CGCG 1 cut(s) 22
AciI CCGC 5 cut(s) 22, 73, 190, 214, 236
AclWI GGATC 3 cut(s) 12, 38, 437
AcsI RAATTY 1 cut(s) 534
AcuI CTGAAG 2 cut(s) 34, 471
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 2 cut(s) 321, 369
AgsI TTSAA 3 cut(s) 155, 406, 469
AleI CACNNNNGTG 1 cut(s) 214
AluBI AGCT 1 cut(s) 515
AluI AGCT 1 cut(s) 515
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 3 cut(s) 12, 38, 437
AlwNI CAGNNNCTG 2 cut(s) 239, 494
Ama87I CYCGRG 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 534
AspLEI GCGC 2 cut(s) 22, 314
AvaI CYCGRG 1 cut(s) 247
BanI GGYRCC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 245
BccI CCATC 3 cut(s) 105, 163, 443
BcoDI GTCTC 1 cut(s) 485
BfuAI ACCTGC 1 cut(s) 32
BisI GCNGC 2 cut(s) 234, 237
BlsI GCNGC 2 cut(s) 235, 238
BmeT110I CYCGRG 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 46, 119
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 71
BmuI ACTGGG 1 cut(s) 145
BplI GAGNNNNNCTC 2 cut(s) 467, 499
BsaAI YACGTR 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 256, 363
Bsc4I CCNNNNNNNGG 2 cut(s) 321, 369
Bse1I ACTGG 3 cut(s) 140, 275, 499
Bse3DI GCAATG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 256, 363
BseGI GGATG 2 cut(s) 86, 521
BseLI CCNNNNNNNGG 2 cut(s) 321, 369
BseMI GCAATG 1 cut(s) 185
BseNI ACTGG 3 cut(s) 140, 275, 499
BseXI GCAGC 1 cut(s) 245
BseYI CCCAGC 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 247
BsiWI CGTACG 1 cut(s) 357
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 321, 369
BsmAI GTCTC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 247
Bsp143I GATC 3 cut(s) 4, 30, 442
Bsp19I CCATGG 2 cut(s) 256, 363
BspACI CCGC 5 cut(s) 22, 73, 190, 214, 236
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 2 cut(s) 46, 119
BspMI ACCTGC 1 cut(s) 32
BspPI GGATC 3 cut(s) 12, 38, 437
BspQI GCTCTTC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 185
BsrI ACTGG 3 cut(s) 140, 275, 499
BssECI CCNNGG 2 cut(s) 256, 363
BssMI GATC 3 cut(s) 4, 30, 442
BssT1I CCWWGG 2 cut(s) 256, 363
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 2 cut(s) 384, 490
BstBAI YACGTR 1 cut(s) 291
BstC8I GCNNGC 2 cut(s) 24, 86
BstDSI CCRYGG 2 cut(s) 256, 363
BstF5I GGATG 2 cut(s) 86, 521
BstFNI CGCG 1 cut(s) 22
BstHHI GCGC 2 cut(s) 22, 314
BstKTI GATC 3 cut(s) 7, 33, 445
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 3 cut(s) 4, 30, 442
BstMWI GCNNNNNNNGC 3 cut(s) 17, 233, 318
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 30
BstYI RGATCY 1 cut(s) 30
BtgI CCRYGG 2 cut(s) 256, 363
BtsCI GGATG 2 cut(s) 86, 521
BtsIMutI CAGTG 1 cut(s) 58
BveI ACCTGC 1 cut(s) 32
Cac8I GCNNGC 2 cut(s) 24, 86
CaiI CAGNNNCTG 2 cut(s) 239, 494
CfoI GCGC 2 cut(s) 22, 314
Csp6I GTAC 1 cut(s) 358
CviAII CATG 2 cut(s) 257, 364
CviJI RGCY 5 cut(s) 26, 239, 274, 321, 515
CviKI_1 RGCY 5 cut(s) 26, 239, 274, 321, 515
CviQI GTAC 1 cut(s) 358
DpnI GATC 3 cut(s) 6, 32, 444
DpnII GATC 3 cut(s) 4, 30, 442
Eam1104I CTCTTC 2 cut(s) 384, 490
EarI CTCTTC 2 cut(s) 384, 490
Eco130I CCWWGG 2 cut(s) 256, 363
Eco57I CTGAAG 2 cut(s) 34, 471
Eco88I CYCGRG 1 cut(s) 247
EcoT14I CCWWGG 2 cut(s) 256, 363
ErhI CCWWGG 2 cut(s) 256, 363
FaeI CATG 2 cut(s) 260, 367
FaiI YATR 7 cut(s) 71, 258, 294, 365, 460, 542, 544
FaqI GGGAC 1 cut(s) 141
FatI CATG 2 cut(s) 256, 363
FauI CCCGC 2 cut(s) 15, 66
Fnu4HI GCNGC 2 cut(s) 234, 237
FokI GGATG 2 cut(s) 93, 508
Fsp4HI GCNGC 2 cut(s) 234, 237
GlaI GCGC 2 cut(s) 21, 313
GluI GCNGC 2 cut(s) 234, 237
GsaI CCCAGC 1 cut(s) 30
HhaI GCGC 2 cut(s) 22, 314
Hin1II CATG 2 cut(s) 260, 367
Hin6I GCGC 2 cut(s) 20, 312
HinP1I GCGC 2 cut(s) 20, 312
HinfI GANTC 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 110, 490
Hpy188III TCNNGA 4 cut(s) 146, 155, 412, 446
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 3 cut(s) 150, 290, 471
HpyCH4V TGCA 2 cut(s) 41, 84
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 233, 318
HpySE526I ACGT 3 cut(s) 150, 290, 471
Hsp92II CATG 2 cut(s) 260, 367
HspAI GCGC 2 cut(s) 20, 312
Kzo9I GATC 3 cut(s) 4, 30, 442
LguI GCTCTTC 1 cut(s) 384
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 71
MaeII ACGT 3 cut(s) 150, 290, 471
MalI GATC 3 cut(s) 6, 32, 444
MboI GATC 3 cut(s) 4, 30, 442
MboII GAAGA 2 cut(s) 371, 477
MflI RGATCY 1 cut(s) 30
MluCI AATT 1 cut(s) 534
MnlI CCTC 3 cut(s) 70, 186, 393
MseI TTAA 2 cut(s) 263, 435
MslI CAYNNNNRTG 1 cut(s) 214
MspA1I CMGCKG 2 cut(s) 214, 236
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 3 cut(s) 17, 233, 318
NcoI CCATGG 2 cut(s) 256, 363
NdeII GATC 3 cut(s) 4, 30, 442
NlaIII CATG 2 cut(s) 260, 367
NlaIV GGNNCC 2 cut(s) 46, 119
OliI CACNNNNGTG 1 cut(s) 214
PaeR7I CTCGAG 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 384
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PfeI GAWTC 1 cut(s) 179
Pfl23II CGTACG 1 cut(s) 357
PflMI CCANNNNNTGG 2 cut(s) 321, 369
PkrI GCNGC 2 cut(s) 235, 238
Ppu21I YACGTR 1 cut(s) 291
PspFI CCCAGC 1 cut(s) 26
PspLI CGTACG 1 cut(s) 357
PspN4I GGNNCC 2 cut(s) 46, 119
PspXI VCTCGAGB 1 cut(s) 247
PstNI CAGNNNCTG 2 cut(s) 239, 494
PsuI RGATCY 1 cut(s) 30
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 214
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 2 cut(s) 263, 435
SatI GCNGC 2 cut(s) 234, 237
Sau3AI GATC 3 cut(s) 4, 30, 442
SetI ASST 7 cut(s) 46, 70, 153, 293, 348, 474, 517
SfaNI GCATC 1 cut(s) 71
Sfr274I CTCGAG 1 cut(s) 247
SlaI CTCGAG 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 1 cut(s) 534
SsiI CCGC 5 cut(s) 22, 73, 190, 214, 236
StyI CCWWGG 2 cut(s) 256, 363
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 3 cut(s) 153, 293, 474
TaqI TCGA 1 cut(s) 248
TasI AATT 1 cut(s) 534
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 2 cut(s) 263, 435
Tru9I TTAA 2 cut(s) 263, 435
TscAI CASTG 1 cut(s) 58
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 447
TspGWI ACGGA 2 cut(s) 145, 345
TspRI CASTG 1 cut(s) 58
Van91I CCANNNNNTGG 2 cut(s) 321, 369
XapI RAATTY 1 cut(s) 534
XhoI CTCGAG 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.