Rroxscaffold_2G00086830

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000216
Physical Location & Seq
Forward (+)
9010201 .. 9012759
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086830.1

Sequence Viewer

Length: 528 bp
ATGATATATTGGAGGACTCATGATGGTGATCTCATTGGGTTGGGCCCCTTTGTGAACAACAACAATAGCAGTTCTAGTGATCATTATCAGTATCGTTTGATTGAATTTGACAGTATTGTGAAGGAGAATTTCACATTTGATTTCTTAGGTGTGTACCAAGGATTTCTGCGCATGTGCGACTACGACTTTGACAATTATTGGCTGCTTGTTTGGGAGCTGACTGAAGAAGAACATGAGCAGCTGGTTGTCAATGGACCTGGAAAATGTGGTTTGGAACATGTGAAACGTTATTCACTTCCCCCAAAAATGATTCCTGGTGATCCAGATGGGCATGTTGAATTGCTAACTTTTGACCCAAATAATGGTGATATCCTTTATCTACGCATAAATGGAGAAATCGTCGAGTGCAACATTCGTACAGGAAAGTGGTCAAAGATGGTTGGGACGAATATGCCAACTGGTTTGTACTTCTTCCCATTAGTGCTCCCGTGGTGGCCTACACCAGTTCCGAGACTACCAGATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

175

Amino Acids

20.41

Weight (kDa)

4.71

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 362
AclI AACGTT 1 cut(s) 286
AclWI GGATC 1 cut(s) 314
AcsI RAATTY 2 cut(s) 104, 127
AcuI CTGAAG 1 cut(s) 243
AfaI GTAC 3 cut(s) 155, 418, 467
AfiI CCNNNNNNNGG 1 cut(s) 362
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 2 cut(s) 104, 338
AjnI CCWGG 2 cut(s) 256, 313
AluBI AGCT 2 cut(s) 217, 241
AluI AGCT 2 cut(s) 217, 241
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 1 cut(s) 505
AlwI GGATC 1 cut(s) 314
AoxI GGCC 2 cut(s) 43, 494
ApaI GGGCCC 1 cut(s) 47
ApeKI GCWGC 2 cut(s) 202, 238
ApoI RAATTY 2 cut(s) 104, 127
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 3 cut(s) 43, 44, 254
AsuHPI GGTGA 3 cut(s) 38, 329, 377
AvaII GGWCC 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 2 cut(s) 189, 250
BccI CCATC 3 cut(s) 17, 320, 430
BciT130I CCWGG 2 cut(s) 258, 315
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 505
BfaI CTAG 1 cut(s) 75
BisI GCNGC 2 cut(s) 203, 239
BlsI GCNGC 2 cut(s) 204, 240
Bme1390I CCNGG 2 cut(s) 258, 315
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 3 cut(s) 43, 44, 254
BmiI GGNNCC 2 cut(s) 45, 46
BmrFI CCNGG 2 cut(s) 258, 315
BsaBI GATNNNNATC 2 cut(s) 27, 84
BsaJI CCNNGG 2 cut(s) 157, 488
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 2 cut(s) 463, 503
Bse8I GATNNNNATC 2 cut(s) 27, 84
BseBI CCWGG 2 cut(s) 258, 315
BseDI CCNNGG 2 cut(s) 157, 488
BseJI GATNNNNATC 2 cut(s) 27, 84
BseLI CCNNNNNNNGG 1 cut(s) 362
BseNI ACTGG 2 cut(s) 463, 503
BseSI GKGCMC 1 cut(s) 47
BseXI GCAGC 2 cut(s) 189, 250
BshFI GGCC 2 cut(s) 45, 496
BsiHKAI GWGCWC 1 cut(s) 486
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 505
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 2 cut(s) 45, 496
Bsp120I GGGCCC 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 47, 486
Bsp143I GATC 3 cut(s) 28, 79, 319
BspANI GGCC 2 cut(s) 45, 496
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 2 cut(s) 45, 46
BspPI GGATC 1 cut(s) 314
BsrI ACTGG 2 cut(s) 463, 503
BssECI CCNNGG 2 cut(s) 157, 488
BssMI GATC 3 cut(s) 28, 79, 319
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 258, 315
Bst4CI ACNGT 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 145
BstDSI CCRYGG 1 cut(s) 488
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 3 cut(s) 31, 82, 322
BstMAI GTCTC 1 cut(s) 505
BstMBI GATC 3 cut(s) 28, 79, 319
BstNI CCWGG 2 cut(s) 258, 315
BstNSI RCATGY 3 cut(s) 175, 281, 335
BstSCI CCNGG 2 cut(s) 256, 313
BstSLI GKGCMC 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 189, 250
BsuRI GGCC 2 cut(s) 45, 496
BtgI CCRYGG 1 cut(s) 488
CciI TCATGA 1 cut(s) 19
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 3 cut(s) 43, 44, 254
Csp6I GTAC 3 cut(s) 154, 417, 466
CviAII CATG 5 cut(s) 20, 172, 233, 278, 332
CviJI RGCY 5 cut(s) 45, 202, 217, 241, 496
CviKI_1 RGCY 5 cut(s) 45, 202, 217, 241, 496
CviQI GTAC 3 cut(s) 154, 417, 466
DdeI CTNAG 1 cut(s) 145
DpnI GATC 3 cut(s) 30, 81, 321
DpnII GATC 3 cut(s) 28, 79, 319
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 47
Eco32I GATATC 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 256, 313
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 5 cut(s) 23, 175, 236, 281, 335
FaiI YATR 8 cut(s) 7, 21, 173, 234, 279, 333, 386, 452
FaqI GGGAC 1 cut(s) 457
FatI CATG 5 cut(s) 19, 171, 232, 277, 331
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 203, 239
FriOI GRGCYC 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 203, 239
FspBI CTAG 1 cut(s) 75
FspI TGCGCA 1 cut(s) 170
GlaI GCGC 1 cut(s) 170
GluI GCNGC 2 cut(s) 203, 239
HaeIII GGCC 2 cut(s) 45, 496
HhaI GCGC 1 cut(s) 171
Hin1II CATG 5 cut(s) 23, 175, 236, 281, 335
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 2 cut(s) 16, 310
HphI GGTGA 3 cut(s) 38, 329, 377
Hpy166II GTNNAC 2 cut(s) 55, 154
Hpy188I TCNGA 1 cut(s) 510
Hpy188III TCNNGA 2 cut(s) 20, 323
Hpy8I GTNNAC 2 cut(s) 55, 154
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 1 cut(s) 408
HpyF3I CTNAG 1 cut(s) 145
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 5 cut(s) 23, 175, 236, 281, 335
HspAI GCGC 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 3 cut(s) 28, 79, 319
LmnI GCTCC 2 cut(s) 214, 489
LpnPI CCDG 9 cut(s) 227, 243, 270, 300, 327, 336, 405, 444, 516
Lsp1109I GCAGC 2 cut(s) 189, 250
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 286
MalI GATC 3 cut(s) 30, 81, 321
MboI GATC 3 cut(s) 28, 79, 319
MboII GAAGA 3 cut(s) 236, 239, 463
MhlI GDGCHC 2 cut(s) 47, 486
MluCI AATT 4 cut(s) 104, 127, 193, 338
MlyI GAGTC 1 cut(s) 10
MnlI CCTC 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 241
MspR9I CCNGG 2 cut(s) 258, 315
MvaI CCWGG 2 cut(s) 258, 315
NdeII GATC 3 cut(s) 28, 79, 319
NlaIII CATG 5 cut(s) 23, 175, 236, 281, 335
NlaIV GGNNCC 2 cut(s) 45, 46
NsbI TGCGCA 1 cut(s) 170
NspI RCATGY 3 cut(s) 175, 281, 335
PagI TCATGA 1 cut(s) 19
PciI ACATGT 1 cut(s) 277
PfeI GAWTC 1 cut(s) 310
PflMI CCANNNNNTGG 1 cut(s) 362
PkrI GCNGC 2 cut(s) 204, 240
PleI GAGTC 1 cut(s) 10
PpsI GAGTC 1 cut(s) 10
PscI ACATGT 1 cut(s) 277
Psp1406I AACGTT 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 256, 313
PspGI CCWGG 2 cut(s) 256, 313
PspN4I GGNNCC 2 cut(s) 45, 46
PspOMI GGGCCC 1 cut(s) 43
PspPI GGNCC 3 cut(s) 43, 44, 254
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 3 cut(s) 155, 418, 467
RsaNI GTAC 3 cut(s) 154, 417, 466
RseI CAYNNNNRTG 1 cut(s) 24
SatI GCNGC 2 cut(s) 203, 239
Sau3AI GATC 3 cut(s) 28, 79, 319
Sau96I GGNCC 3 cut(s) 43, 44, 254
SchI GAGTC 1 cut(s) 10
ScrFI CCNGG 2 cut(s) 258, 315
SduI GDGCHC 2 cut(s) 47, 486
SetI ASST 5 cut(s) 151, 219, 243, 259, 289
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 4 cut(s) 104, 127, 193, 338
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 2 cut(s) 256, 313
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 1 cut(s) 289
TaqI TCGA 1 cut(s) 402
TasI AATT 4 cut(s) 104, 127, 193, 338
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 1 cut(s) 310
TseI GCWGC 2 cut(s) 202, 238
Van91I CCANNNNNTGG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 2 cut(s) 104, 127
XceI RCATGY 3 cut(s) 175, 281, 335
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.