Rh6CG352600

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000216
Physical Location & Seq
Reverse (-)
54195422 .. 54196120
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG352600.1

Sequence Viewer

Length: 699 bp
ATGTTCTCTTCCGAGACTGGTAAATGGATAGAATCAGTTGTCCTATGCCCAAAGAGGTTTAGACCTCATCCTCTCCAGCAGAGTGCACCAGCCCTTGCTTACAATGGAACCTTGTACTGGTTAGGTCGTGGTGGGATTCTTATTGGGTTGGAGCCTTTCAAGCTCGACAATAAAAACAACCATAACTATCATTGTCATTTTATTTCCGGGCCTCGTTCCGGGTTTCCATTGTTTTATGATTCATACAATTACACCGATTGCCTGGGTGTCTGCCGGGGTTGTGTGAGGATGTGCCGGCTGTATACTCTGACACGTTTCATTCTTTTTGTGTGGGAGCTGAAAGAAGATAGCGGTCTTGAGGTGGATGGAGTTGGAGGCAAAAAGATGAAATGGTGTTTAAAGGAGAGGATCTTCCTGGACCAAATTAAGTCGCAATATATGGTGCCTCATCCCTACTGGCTTCTGGCTTTGGACCCAAATGATGAAGACATGCTGTACCTGCTACGGAGACCTAGCAGCTCCGATCCAAAAGACATTGTTAAGTGCAATATTCGAACAGAAACGCTAATTGACATCTCTCCAAAGTTGCCATTAAAGACAGACGTGGAGGCATTTCCATTTATGCTCTCATGGTGGCGGTGGCCAACACCAGTTCCTAAATTAGGCCATCACAACAATAGCAGCTGCCCACCGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

232

Amino Acids

26.92

Weight (kDa)

8.68

Isoelectric Point (pI)

60.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 2 - 189 4.1e-10 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 507
AccB1I GGYRCC 1 cut(s) 442
AccI GTMKAC 1 cut(s) 302
AciI CCGC 3 cut(s) 351, 637, 692
AclWI GGATC 2 cut(s) 416, 518
AcoI YGGCCR 1 cut(s) 641
AfaI GTAC 2 cut(s) 116, 497
AfiI CCNNNNNNNGG 3 cut(s) 117, 218, 662
AflIII ACRYGT 1 cut(s) 311
AgsI TTSAA 1 cut(s) 160
AjiI CACGTC 1 cut(s) 604
AjnI CCWGG 2 cut(s) 261, 414
AluBI AGCT 4 cut(s) 163, 337, 519, 684
AluI AGCT 4 cut(s) 163, 337, 519, 684
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 8, 502
Alw44I GTGCAC 1 cut(s) 84
AlwI GGATC 2 cut(s) 416, 518
AoxI GGCC 3 cut(s) 209, 641, 664
ApaLI GTGCAC 1 cut(s) 84
ApeKI GCWGC 3 cut(s) 516, 681, 684
AspS9I GGNCC 3 cut(s) 209, 418, 472
AsuC2I CCSGG 3 cut(s) 208, 220, 275
AsuII TTCGAA 1 cut(s) 553
AvaII GGWCC 2 cut(s) 418, 472
BaeGI GKGCMC 1 cut(s) 88
BalI TGGCCA 1 cut(s) 643
BanI GGYRCC 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 3 cut(s) 528, 671, 693
BccI CCATC 2 cut(s) 359, 675
BciT130I CCWGG 2 cut(s) 263, 416
BcnI CCSGG 3 cut(s) 208, 220, 275
BcoDI GTCTC 2 cut(s) 8, 502
BfaI CTAG 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 507
BisI GCNGC 3 cut(s) 517, 682, 685
BlsI GCNGC 3 cut(s) 518, 683, 686
Bme1390I CCNGG 5 cut(s) 208, 220, 263, 275, 416
Bme18I GGWCC 2 cut(s) 418, 472
BmgBI CACGTC 1 cut(s) 604
BmgT120I GGNCC 3 cut(s) 209, 418, 472
BmiI GGNNCC 4 cut(s) 109, 153, 444, 474
BmrFI CCNGG 5 cut(s) 208, 220, 263, 275, 416
BpiI GAAGAC 1 cut(s) 492
BpmI CTGGAG 1 cut(s) 59
Bpu14I TTCGAA 1 cut(s) 553
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 3 cut(s) 208, 220, 275
BsaI GGTCTC 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 262, 274
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 218, 662
Bse118I RCCGGY 1 cut(s) 294
Bse1I ACTGG 4 cut(s) 22, 122, 461, 650
BseBI CCWGG 2 cut(s) 263, 416
BseDI CCNNGG 2 cut(s) 262, 274
BseGI GGATG 4 cut(s) 67, 294, 370, 448
BseLI CCNNNNNNNGG 3 cut(s) 117, 218, 662
BseNI ACTGG 4 cut(s) 22, 122, 461, 650
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 3 cut(s) 528, 671, 693
BshFI GGCC 3 cut(s) 211, 643, 666
BshNI GGYRCC 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 4 cut(s) 207, 219, 274, 295
BslI CCNNNNNNNGG 3 cut(s) 117, 218, 662
BsmAI GTCTC 2 cut(s) 8, 502
BsnI GGCC 3 cut(s) 211, 643, 666
Bso31I GGTCTC 1 cut(s) 502
Bsp119I TTCGAA 1 cut(s) 553
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 2 cut(s) 408, 523
BspACI CCGC 3 cut(s) 351, 637, 692
BspANI GGCC 3 cut(s) 211, 643, 666
BspLI GGNNCC 4 cut(s) 109, 153, 444, 474
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 2 cut(s) 416, 518
BspT104I TTCGAA 1 cut(s) 553
BspT107I GGYRCC 1 cut(s) 442
BspTNI GGTCTC 1 cut(s) 502
BsrFI RCCGGY 1 cut(s) 294
BsrI ACTGG 4 cut(s) 22, 122, 461, 650
BssAI RCCGGY 1 cut(s) 294
BssECI CCNNGG 2 cut(s) 262, 274
BssMI GATC 2 cut(s) 408, 523
BssNAI GTATAC 1 cut(s) 303
Bst1107I GTATAC 1 cut(s) 303
Bst2UI CCWGG 2 cut(s) 263, 416
Bst6I CTCTTC 1 cut(s) 13
BstBI TTCGAA 1 cut(s) 553
BstC8I GCNNGC 1 cut(s) 296
BstENI CCTNNNNNAGG 1 cut(s) 660
BstF5I GGATG 4 cut(s) 67, 294, 370, 448
BstKTI GATC 2 cut(s) 411, 526
BstMAI GTCTC 2 cut(s) 8, 502
BstMBI GATC 2 cut(s) 408, 523
BstMWI GCNNNNNNNGC 2 cut(s) 160, 499
BstNI CCWGG 2 cut(s) 263, 416
BstNSI RCATGY 1 cut(s) 493
BstSCI CCNGG 5 cut(s) 206, 218, 261, 273, 414
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 3 cut(s) 528, 671, 693
BstV2I GAAGAC 1 cut(s) 492
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BstZ17I GTATAC 1 cut(s) 303
BsuRI GGCC 3 cut(s) 211, 643, 666
BtrI CACGTC 1 cut(s) 604
BtsCI GGATG 4 cut(s) 67, 294, 370, 448
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 294
Cfr13I GGNCC 3 cut(s) 209, 418, 472
Csp6I GTAC 2 cut(s) 115, 496
CviAII CATG 2 cut(s) 490, 630
CviQI GTAC 2 cut(s) 115, 496
DpnI GATC 2 cut(s) 410, 525
DpnII GATC 2 cut(s) 408, 523
DraI TTTAAA 1 cut(s) 399
EaeI YGGCCR 1 cut(s) 641
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 502
Eco47I GGWCC 2 cut(s) 418, 472
EcoNI CCTNNNNNAGG 1 cut(s) 660
EcoRII CCWGG 2 cut(s) 261, 414
FaeI CATG 2 cut(s) 493, 633
FatI CATG 2 cut(s) 489, 629
FblI GTMKAC 1 cut(s) 302
Fnu4HI GCNGC 3 cut(s) 517, 682, 685
FokI GGATG 4 cut(s) 54, 301, 377, 435
Fsp4HI GCNGC 3 cut(s) 517, 682, 685
FspBI CTAG 1 cut(s) 513
GluI GCNGC 3 cut(s) 517, 682, 685
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 3 cut(s) 211, 643, 666
HapII CCGG 4 cut(s) 207, 219, 274, 295
Hin1II CATG 2 cut(s) 493, 633
HinfI GANTC 3 cut(s) 32, 136, 239
HpaII CCGG 4 cut(s) 207, 219, 274, 295
Hpy166II GTNNAC 2 cut(s) 86, 303
Hpy188I TCNGA 3 cut(s) 13, 309, 523
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 2 cut(s) 86, 303
HpyCH4IV ACGT 2 cut(s) 313, 603
HpyCH4V TGCA 2 cut(s) 86, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 499
HpySE526I ACGT 2 cut(s) 313, 603
Hsp92II CATG 2 cut(s) 493, 633
KroI GCCGGC 1 cut(s) 294
KroNI GCCGGC 1 cut(s) 296
Kzo9I GATC 2 cut(s) 408, 523
LmnI GCTCC 3 cut(s) 151, 334, 524
Lsp1109I GCAGC 3 cut(s) 528, 671, 693
MaeI CTAG 1 cut(s) 513
MaeII ACGT 2 cut(s) 313, 603
MalI GATC 2 cut(s) 410, 525
MboI GATC 2 cut(s) 408, 523
MboII GAAGA 3 cut(s) 356, 403, 497
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 1 cut(s) 88
MlsI TGGCCA 1 cut(s) 643
MluCI AATT 4 cut(s) 247, 423, 567, 659
MluNI TGGCCA 1 cut(s) 643
MmeI TCCRAC 2 cut(s) 129, 352
Mox20I TGGCCA 1 cut(s) 643
MroNI GCCGGC 1 cut(s) 294
MscI TGGCCA 1 cut(s) 643
MseI TTAA 4 cut(s) 398, 426, 540, 593
Msp20I TGGCCA 1 cut(s) 643
MspA1I CMGCKG 1 cut(s) 684
MspI CCGG 4 cut(s) 207, 219, 274, 295
MspR9I CCNGG 5 cut(s) 208, 220, 263, 275, 416
MvaI CCWGG 2 cut(s) 263, 416
MwoI GCNNNNNNNGC 2 cut(s) 160, 499
NaeI GCCGGC 1 cut(s) 296
NciI CCSGG 3 cut(s) 208, 220, 275
NdeII GATC 2 cut(s) 408, 523
NgoMIV GCCGGC 1 cut(s) 294
NlaIII CATG 2 cut(s) 493, 633
NlaIV GGNNCC 4 cut(s) 109, 153, 444, 474
NspI RCATGY 1 cut(s) 493
NspV TTCGAA 1 cut(s) 553
PdiI GCCGGC 1 cut(s) 296
PfeI GAWTC 3 cut(s) 32, 136, 239
PfoI TCCNGGA 1 cut(s) 414
PkrI GCNGC 3 cut(s) 518, 683, 686
Psp6I CCWGG 2 cut(s) 261, 414
PspGI CCWGG 2 cut(s) 261, 414
PspN4I GGNNCC 4 cut(s) 109, 153, 444, 474
PspPI GGNCC 3 cut(s) 209, 418, 472
PsuI RGATCY 1 cut(s) 408
PvuII CAGCTG 1 cut(s) 684
RsaI GTAC 2 cut(s) 116, 497
RsaNI GTAC 2 cut(s) 115, 496
SaqAI TTAA 4 cut(s) 398, 426, 540, 593
SatI GCNGC 3 cut(s) 517, 682, 685
Sau3AI GATC 2 cut(s) 408, 523
Sau96I GGNCC 3 cut(s) 209, 418, 472
ScrFI CCNGG 5 cut(s) 208, 220, 263, 275, 416
SduI GDGCHC 1 cut(s) 88
SfuI TTCGAA 1 cut(s) 553
SinI GGWCC 2 cut(s) 418, 472
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 247, 423, 567, 659
SsiI CCGC 3 cut(s) 351, 637, 692
SspI AATATT 1 cut(s) 550
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 5 cut(s) 206, 218, 261, 273, 414
TaiI ACGT 2 cut(s) 316, 606
TaqI TCGA 2 cut(s) 165, 553
TasI AATT 4 cut(s) 247, 423, 567, 659
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 3 cut(s) 32, 136, 239
Tru1I TTAA 4 cut(s) 398, 426, 540, 593
Tru9I TTAA 4 cut(s) 398, 426, 540, 593
TseI GCWGC 3 cut(s) 516, 681, 684
TspDTI ATGAA 4 cut(s) 231, 307, 401, 498
TspGWI ACGGA 1 cut(s) 520
VneI GTGCAC 1 cut(s) 84
VpaK11BI GGWCC 2 cut(s) 418, 472
XagI CCTNNNNNAGG 1 cut(s) 660
XceI RCATGY 1 cut(s) 493
XmiI GTMKAC 1 cut(s) 302
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.