Rmu_sc0007384.1_g000001

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007384.1
OG0000216
Physical Location & Seq
Forward (+)
480 .. 1457
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007384.1_g000001.1.cds

Sequence Viewer

Length: 978 bp
atgacttggttctgtgctgtgcaacgaagtatgaacaaggtgattactacaatctgcaatccatacacaatccaatgggctgaacttcctcccccgcctcgagtatacgagtacacacctgtgggattcatctgcgatcttccctattataacagtaagacaggtgatcaggaatcaggagataccatcaagcttaattcagagtataggtgcagggttgtgagaattattttttcccctgatcaggaattttcctgcacattgggagtgcagatcttctcttctgagacgggtgaatggacagaatcaattgtatcccccccaactgcccttaggtatgagtccattgatcccagcattagctttgcttgcaacggaatgttgtattggatgggtcgtcgtcgaaatttttttatttttgggttggatccattcatggtcaacagtagtaagaatagtactagcattagtactaatgggaataatactattgatcgctgtaaatgtcgattgattgaatttgataactgtgggtgtgaaatacttcggtgcgtaggagtccatagagggtgtttgcgcatgtccgagtacgactttgtcagccgtgctgtatttgttgcggatcttattgtaggagaacaaggtggttggatggtcaagtgtcatggaggaacttccagattatgtataaaagacatggtgaggatttattcactggatgaagaaaaaatggatttgcagattgatgaagaaaatttgtgtatattgctagcttttgacccagacgatgatgatatcttttatctgcgggtagatgaggacattttcatgtgcaacttttatacaagtgaatggtcaaagatagcagaaaagagtccaattgatagtcctttcttctacccatttgtgctcccatggtggccaacaccagttcctagacaaccgcaacatgcacaaccaagcggggacaacctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

325

Amino Acids

37.37

Weight (kDa)

4.72

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
Acc16I TGCGCA 1 cut(s) 578
AccI GTMKAC 1 cut(s) 105
AciI CCGC 5 cut(s) 95, 620, 808, 944, 963
AclWI GGATC 4 cut(s) 344, 422, 435, 630
AcoI YGGCCR 1 cut(s) 920
AcsI RAATTY 4 cut(s) 248, 406, 518, 754
AfaI GTAC 4 cut(s) 113, 460, 472, 590
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 518
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AleI CACNNNNGTG 1 cut(s) 119
AluBI AGCT 3 cut(s) 193, 363, 773
AluI AGCT 3 cut(s) 193, 363, 773
Alw21I GWGCWC 1 cut(s) 912
Alw26I GTCTC 1 cut(s) 281
AlwI GGATC 4 cut(s) 344, 422, 435, 630
Ama87I CYCGRG 1 cut(s) 99
AoxI GGCC 1 cut(s) 920
ApoI RAATTY 4 cut(s) 248, 406, 518, 754
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 1 cut(s) 579
AsuHPI GGTGA 4 cut(s) 52, 176, 305, 712
AsuNHI GCTAGC 1 cut(s) 769
AvaI CYCGRG 1 cut(s) 99
AxyI CCTNAGG 1 cut(s) 332
BalI TGGCCA 1 cut(s) 922
BamHI GGATCC 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 912
BccI CCATC 3 cut(s) 194, 385, 646
BceAI ACGGC 1 cut(s) 588
BciVI GTATCC 1 cut(s) 325
BclI TGATCA 2 cut(s) 166, 241
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 3 cut(s) 462, 770, 936
BfuI GTATCC 1 cut(s) 325
BglII AGATCT 1 cut(s) 273
BmcAI AGTACT 2 cut(s) 460, 472
BmeT110I CYCGRG 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 429
BmtI GCTAGC 1 cut(s) 773
BsaJI CCNNGG 1 cut(s) 914
Bsc4I CCNNNNNNNGG 1 cut(s) 244
Bse1I ACTGG 2 cut(s) 720, 929
Bse21I CCTNAGG 1 cut(s) 332
BseDI CCNNGG 1 cut(s) 914
BseGI GGATG 3 cut(s) 396, 657, 724
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 2 cut(s) 720, 929
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 3 cut(s) 232, 241, 290
BshFI GGCC 1 cut(s) 922
BsiHKAI GWGCWC 1 cut(s) 912
BsiHKCI CYCGRG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 281
BsmBI CGTCTC 1 cut(s) 281
BsnI GGCC 1 cut(s) 922
BsoBI CYCGRG 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 912
Bsp143I GATC 8 cut(s) 136, 166, 241, 273, 349, 427, 493, 622
Bsp19I CCATGG 1 cut(s) 914
BspACI CCGC 5 cut(s) 95, 620, 808, 944, 963
BspANI GGCC 1 cut(s) 922
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 429
BspOI GCTAGC 1 cut(s) 773
BspPI GGATC 4 cut(s) 344, 422, 435, 630
BsrI ACTGG 2 cut(s) 720, 929
BssECI CCNNGG 1 cut(s) 914
BssMI GATC 8 cut(s) 136, 166, 241, 273, 349, 427, 493, 622
BssNAI GTATAC 1 cut(s) 106
BssT1I CCWWGG 1 cut(s) 914
Bst1107I GTATAC 1 cut(s) 106
Bst4CI ACNGT 3 cut(s) 155, 446, 530
Bst6I CTCTTC 1 cut(s) 286
BstC8I GCNNGC 2 cut(s) 370, 771
BstDEI CTNAG 2 cut(s) 285, 332
BstDSI CCRYGG 1 cut(s) 914
BstF5I GGATG 3 cut(s) 396, 657, 724
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 8 cut(s) 139, 169, 244, 276, 352, 430, 496, 625
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 8 cut(s) 136, 166, 241, 273, 349, 427, 493, 622
BstMWI GCNNNNNNNGC 1 cut(s) 369
BstNSI RCATGY 2 cut(s) 583, 953
BstX2I RGATCY 3 cut(s) 273, 427, 622
BstYI RGATCY 3 cut(s) 273, 427, 622
BstZ17I GTATAC 1 cut(s) 106
Bsu36I CCTNAGG 1 cut(s) 332
BsuI GTATCC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 922
BtgI CCRYGG 1 cut(s) 914
BtsCI GGATG 3 cut(s) 396, 657, 724
BtsIMutI CAGTG 1 cut(s) 713
Cac8I GCNNGC 2 cut(s) 370, 771
CfoI GCGC 1 cut(s) 579
Csp6I GTAC 4 cut(s) 112, 459, 471, 589
CviAII CATG 7 cut(s) 436, 580, 665, 697, 829, 915, 950
CviJI RGCY 6 cut(s) 80, 193, 363, 603, 773, 922
CviKI_1 RGCY 6 cut(s) 80, 193, 363, 603, 773, 922
CviQI GTAC 4 cut(s) 112, 459, 471, 589
DdeI CTNAG 2 cut(s) 285, 332
DpnI GATC 8 cut(s) 138, 168, 243, 275, 351, 429, 495, 624
DpnII GATC 8 cut(s) 136, 166, 241, 273, 349, 427, 493, 622
EaeI YGGCCR 1 cut(s) 920
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 914
Eco32I GATATC 1 cut(s) 796
Eco81I CCTNAGG 1 cut(s) 332
Eco88I CYCGRG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 796
EcoT14I CCWWGG 1 cut(s) 914
ErhI CCWWGG 1 cut(s) 914
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 7 cut(s) 439, 583, 668, 700, 832, 918, 953
FatI CATG 7 cut(s) 435, 579, 664, 696, 828, 914, 949
FauI CCCGC 3 cut(s) 102, 801, 956
FbaI TGATCA 2 cut(s) 166, 241
FblI GTMKAC 1 cut(s) 105
FokI GGATG 3 cut(s) 403, 664, 731
FspBI CTAG 3 cut(s) 462, 770, 936
FspI TGCGCA 1 cut(s) 578
GlaI GCGC 1 cut(s) 578
GsaI CCCAGC 1 cut(s) 357
HaeIII GGCC 1 cut(s) 922
HhaI GCGC 1 cut(s) 579
Hin1II CATG 7 cut(s) 439, 583, 668, 700, 832, 918, 953
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 6 cut(s) 126, 173, 305, 341, 558, 874
HphI GGTGA 4 cut(s) 52, 176, 305, 712
Hpy166II GTNNAC 3 cut(s) 106, 114, 442
Hpy188I TCNGA 3 cut(s) 202, 286, 586
Hpy188III TCNNGA 4 cut(s) 170, 177, 245, 678
Hpy8I GTNNAC 3 cut(s) 106, 114, 442
Hpy99I CGWCG 2 cut(s) 402, 405
HpyCH4III ACNGT 3 cut(s) 155, 446, 530
HpyCH4V TGCA 9 cut(s) 22, 57, 213, 258, 271, 372, 739, 834, 953
HpyF10VI GCNNNNNNNGC 1 cut(s) 369
HpyF3I CTNAG 2 cut(s) 285, 332
Hsp92II CATG 7 cut(s) 439, 583, 668, 700, 832, 918, 953
HspAI GCGC 1 cut(s) 577
Ksp22I TGATCA 2 cut(s) 166, 241
Kzo9I GATC 8 cut(s) 136, 166, 241, 273, 349, 427, 493, 622
LmnI GCTCC 1 cut(s) 915
MaeI CTAG 3 cut(s) 462, 770, 936
MalI GATC 8 cut(s) 138, 168, 243, 275, 351, 429, 495, 624
MboI GATC 8 cut(s) 136, 166, 241, 273, 349, 427, 493, 622
MboII GAAGA 6 cut(s) 131, 268, 273, 734, 761, 886
MfeI CAATTG 2 cut(s) 309, 879
MflI RGATCY 3 cut(s) 273, 427, 622
MhlI GDGCHC 1 cut(s) 912
MlsI TGGCCA 1 cut(s) 922
MluCI AATT 8 cut(s) 196, 225, 248, 309, 406, 518, 754, 879
MluNI TGGCCA 1 cut(s) 922
MlyI GAGTC 3 cut(s) 350, 567, 883
MmeI TCCRAC 2 cut(s) 405, 629
MnlI CCTC 6 cut(s) 99, 108, 560, 662, 696, 811
Mox20I TGGCCA 1 cut(s) 922
MroXI GAANNNNTTC 1 cut(s) 543
MscI TGGCCA 1 cut(s) 922
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 119, 827
Msp20I TGGCCA 1 cut(s) 922
MunI CAATTG 2 cut(s) 309, 879
MwoI GCNNNNNNNGC 1 cut(s) 369
NcoI CCATGG 1 cut(s) 914
NdeII GATC 8 cut(s) 136, 166, 241, 273, 349, 427, 493, 622
NheI GCTAGC 1 cut(s) 769
NlaIII CATG 7 cut(s) 439, 583, 668, 700, 832, 918, 953
NlaIV GGNNCC 1 cut(s) 429
NsbI TGCGCA 1 cut(s) 578
NspI RCATGY 2 cut(s) 583, 953
OliI CACNNNNGTG 1 cut(s) 119
PaeR7I CTCGAG 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 3 cut(s) 126, 173, 305
PflFI GACNNNGTC 1 cut(s) 596
PleI GAGTC 3 cut(s) 349, 566, 882
PpsI GAGTC 3 cut(s) 349, 566, 882
PsiI TTATAA 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 429
PspXI VCTCGAGB 1 cut(s) 99
PsuI RGATCY 3 cut(s) 273, 427, 622
PsyI GACNNNGTC 1 cut(s) 596
RsaI GTAC 4 cut(s) 113, 460, 472, 590
RsaNI GTAC 4 cut(s) 112, 459, 471, 589
RseI CAYNNNNRTG 2 cut(s) 119, 827
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 8 cut(s) 136, 166, 241, 273, 349, 427, 493, 622
ScaI AGTACT 2 cut(s) 460, 472
SchI GAGTC 3 cut(s) 350, 567, 883
SduI GDGCHC 1 cut(s) 912
Sfr274I CTCGAG 1 cut(s) 99
SlaI CTCGAG 1 cut(s) 99
SmiMI CAYNNNNRTG 2 cut(s) 119, 827
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 8 cut(s) 196, 225, 248, 309, 406, 518, 754, 879
SsiI CCGC 5 cut(s) 95, 620, 808, 944, 963
SspMI CTAG 3 cut(s) 462, 770, 936
StyI CCWWGG 1 cut(s) 914
TaaI ACNGT 3 cut(s) 155, 446, 530
TaqI TCGA 3 cut(s) 100, 403, 508
TasI AATT 8 cut(s) 196, 225, 248, 309, 406, 518, 754, 879
TatI WGTACW 3 cut(s) 111, 458, 470
TfiI GAWTC 3 cut(s) 126, 173, 305
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 720
TspDTI ATGAA 6 cut(s) 47, 118, 424, 735, 762, 817
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 720
Tth111I GACNNNGTC 1 cut(s) 596
XapI RAATTY 4 cut(s) 248, 406, 518, 754
XceI RCATGY 2 cut(s) 583, 953
XhoI CTCGAG 1 cut(s) 99
XmiI GTMKAC 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 3 cut(s) 462, 770, 936
ZrmI AGTACT 2 cut(s) 460, 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.