Rh6CG214800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000216
Physical Location & Seq
Forward (+)
35748963 .. 35750252
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG214800.1

Sequence Viewer

Length: 1290 bp
ATGACTGCTAATATTGAAAATCTTCCCGAACATGTTTTGGTTGAAATTCTCTGTCGACTTCCTTGCTATAAATTCGTCTCTCAATGCAAGTGTGTGTCCAAACGTTGGTGCACTCTCATGTCAAATCCTTCTTTCATTGGCCGCTTCCTGTGCCTGCAAATGGAAAGGCCAATAATACGTACCTTGATAAACGCTGAAGGGTTGGAATTCCTTAACAAAACTTCATCATTGTCCAAGCCACTAACTCCTTTGTTCAGAAGACTGATGAGTATTTACAGTTTGGAGAAAGAGCCAATTGTGGTTGGTACATATAATGACTTGGTTCTCTGCTGTGCAACCAAGTATGAACAATGTGATTACTACATCTGCAATCCATGCACAATCCAATGGGCTGAACTTCCACCCCCGCCTTCAGTATACGAGTACACACCTGTGGGATTCATCTGCGATCTGCCCTACTATAATGATAAGACAGGTGATCAGGAATCAGGAGATACCATCAAGCTTAATTCGGAGTATAGGTGCAGGGTGGTGAGAATTATTTTTCCTCCAGATCAGGAATTTTCCTGCACATTGGGAGTGCAGATCTTCTCTTCTGAGACGGGTGAATGGACAGAATCAATTGTATCCACTCCATCTGCCCTTTGGTATGAGTCCATTGATCACAGCTTTAGCTTTGCTTGCAACGGAATGTTGTATTGGATGAGTCGTCGTCAAAATTTTTTTATTTTTGGGTTGGATCCATTCATGGTCAACAATAGTGACAATAGTACTAGCACTATTACTAATGGCAATAATACTATTGATCACTATAAATGTCGTTTGATTGAATTTGATGACTGTGGTTGTGAAATACTTCGGTGCGTAGGAGTCCATAGAGGGTGTTTGCGCATGTCCGAGTACGACTTTGTCAGCCGTGCTGTATTGGTTGCGGATCTTATTGTAGGAGAACAAGGTGGTTGGATGGTCAAGTGTCATGGAGGAACTTCCAGATTATGTATAAAAGACATGGTGAGGATTTATTCACTGGATGAAGAAAAAATGGATTTGCAGATTGATGAAGAAAATTTGTGTATATTGCTAGCTTTTGACCCAGACGATGATGATATCTTTTATCTGCGGGTAGATAAGGACATTTTCATGTGCAACATTTTTACAAGTGAATGGTCAAAGATAGCAGAAAAGAGTCCAATTGATAGTCCTTTCTTCTACCCATTTGTGCTCCCATGGTGGCCAACACCAGTTCCTAGACTACCGCAACATGCACAACCAAGCGGAAACAACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

429

Amino Acids

49.36

Weight (kDa)

4.82

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 45 9.7e-06 F-box domain
b-prop_At3g26010-like PF24750 73 - 240 8.9e-11 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 890
AccB7I CCANNNNNTGG 1 cut(s) 105
AccI GTMKAC 2 cut(s) 55, 417
AciI CCGC 6 cut(s) 142, 407, 932, 1120, 1256, 1275
AclI AACGTT 1 cut(s) 103
AclWI GGATC 3 cut(s) 734, 747, 942
AcoI YGGCCR 2 cut(s) 139, 1232
AcsI RAATTY 7 cut(s) 45, 71, 206, 560, 718, 830, 1066
AcuI CTGAAG 2 cut(s) 216, 396
AfaI GTAC 5 cut(s) 181, 307, 425, 772, 902
AfiI CCNNNNNNNGG 2 cut(s) 105, 160
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 3 cut(s) 17, 44, 830
AjuI GAANNNNNNNTTGG 2 cut(s) 682, 714
AleI CACNNNNGTG 1 cut(s) 431
AluBI AGCT 4 cut(s) 505, 669, 675, 1085
AluI AGCT 4 cut(s) 505, 669, 675, 1085
Alw21I GWGCWC 2 cut(s) 113, 1224
Alw26I GTCTC 2 cut(s) 82, 593
Alw44I GTGCAC 1 cut(s) 109
AlwI GGATC 3 cut(s) 734, 747, 942
AoxI GGCC 3 cut(s) 139, 167, 1232
ApaLI GTGCAC 1 cut(s) 109
ApoI RAATTY 7 cut(s) 45, 71, 206, 560, 718, 830, 1066
Asp700I GAANNNNTTC 2 cut(s) 21, 855
AspLEI GCGC 1 cut(s) 891
AsuHPI GGTGA 4 cut(s) 488, 544, 617, 1024
AsuNHI GCTAGC 1 cut(s) 1081
BaeGI GKGCMC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 1234
BamHI GGATCC 1 cut(s) 739
BbsI GAAGAC 1 cut(s) 265
Bbv12I GWGCWC 2 cut(s) 113, 1224
BccI CCATC 3 cut(s) 506, 643, 958
BceAI ACGGC 1 cut(s) 900
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciVI GTATCC 1 cut(s) 637
BclI TGATCA 3 cut(s) 478, 661, 805
BcoDI GTCTC 2 cut(s) 82, 593
BfaI CTAG 3 cut(s) 774, 1082, 1248
BfuI GTATCC 1 cut(s) 637
BglII AGATCT 1 cut(s) 585
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
BmcAI AGTACT 1 cut(s) 772
BmiI GGNNCC 1 cut(s) 741
BmtI GCTAGC 1 cut(s) 1085
BpiI GAAGAC 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 534
BsaAI YACGTR 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 1226
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 160
Bse1I ACTGG 2 cut(s) 1032, 1241
BseDI CCNNGG 1 cut(s) 1226
BseGI GGATG 3 cut(s) 708, 969, 1036
BseLI CCNNNNNNNGG 2 cut(s) 105, 160
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 2 cut(s) 1032, 1241
BseSI GKGCMC 1 cut(s) 113
BsgI GTGCAG 3 cut(s) 544, 553, 602
BshFI GGCC 3 cut(s) 141, 169, 1234
BsiHKAI GWGCWC 2 cut(s) 113, 1224
BslI CCNNNNNNNGG 2 cut(s) 105, 160
BsmAI GTCTC 2 cut(s) 82, 593
BsmBI CGTCTC 2 cut(s) 82, 593
BsnI GGCC 3 cut(s) 141, 169, 1234
Bsp1286I GDGCHC 2 cut(s) 113, 1224
Bsp143I GATC 8 cut(s) 448, 478, 553, 585, 661, 739, 805, 934
Bsp19I CCATGG 1 cut(s) 1226
BspACI CCGC 6 cut(s) 142, 407, 932, 1120, 1256, 1275
BspANI GGCC 3 cut(s) 141, 169, 1234
BspCNI CTCAG 1 cut(s) 589
BspLI GGNNCC 1 cut(s) 741
BspOI GCTAGC 1 cut(s) 1085
BspPI GGATC 3 cut(s) 734, 747, 942
BsrI ACTGG 2 cut(s) 1032, 1241
BssECI CCNNGG 1 cut(s) 1226
BssMI GATC 8 cut(s) 448, 478, 553, 585, 661, 739, 805, 934
BssNAI GTATAC 1 cut(s) 418
BssT1I CCWWGG 1 cut(s) 1226
Bst1107I GTATAC 1 cut(s) 418
Bst4CI ACNGT 2 cut(s) 278, 842
Bst6I CTCTTC 1 cut(s) 598
BstAPI GCANNNNNTGC 1 cut(s) 375
BstBAI YACGTR 1 cut(s) 179
BstC8I GCNNGC 3 cut(s) 155, 682, 1083
BstDEI CTNAG 1 cut(s) 597
BstDSI CCRYGG 1 cut(s) 1226
BstF5I GGATG 3 cut(s) 708, 969, 1036
BstHHI GCGC 1 cut(s) 891
BstKTI GATC 8 cut(s) 451, 481, 556, 588, 664, 742, 808, 937
BstMAI GTCTC 2 cut(s) 82, 593
BstMBI GATC 8 cut(s) 448, 478, 553, 585, 661, 739, 805, 934
BstMWI GCNNNNNNNGC 3 cut(s) 150, 375, 681
BstNSI RCATGY 3 cut(s) 35, 895, 1265
BstSLI GKGCMC 1 cut(s) 113
BstSNI TACGTA 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 265
BstX2I RGATCY 3 cut(s) 585, 739, 934
BstYI RGATCY 3 cut(s) 585, 739, 934
BstZ17I GTATAC 1 cut(s) 418
BsuI GTATCC 1 cut(s) 637
BsuRI GGCC 3 cut(s) 141, 169, 1234
BtgI CCRYGG 1 cut(s) 1226
BtsCI GGATG 3 cut(s) 708, 969, 1036
BtsIMutI CAGTG 1 cut(s) 1025
Cac8I GCNNGC 3 cut(s) 155, 682, 1083
CfoI GCGC 1 cut(s) 891
Csp6I GTAC 5 cut(s) 180, 306, 424, 771, 901
CviQI GTAC 5 cut(s) 180, 306, 424, 771, 901
DdeI CTNAG 1 cut(s) 597
DpnI GATC 8 cut(s) 450, 480, 555, 587, 663, 741, 807, 936
DpnII GATC 8 cut(s) 448, 478, 553, 585, 661, 739, 805, 934
EaeI YGGCCR 2 cut(s) 139, 1232
Eam1104I CTCTTC 1 cut(s) 598
EarI CTCTTC 1 cut(s) 598
Eco105I TACGTA 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 1226
Eco32I GATATC 1 cut(s) 1108
Eco57I CTGAAG 2 cut(s) 216, 396
EcoRI GAATTC 1 cut(s) 206
EcoRV GATATC 1 cut(s) 1108
EcoT14I CCWWGG 1 cut(s) 1226
ErhI CCWWGG 1 cut(s) 1226
Esp3I CGTCTC 2 cut(s) 82, 593
FauI CCCGC 2 cut(s) 414, 1113
FbaI TGATCA 3 cut(s) 478, 661, 805
FblI GTMKAC 2 cut(s) 55, 417
Fnu4HI GCNGC 1 cut(s) 142
FokI GGATG 3 cut(s) 715, 976, 1043
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 3 cut(s) 774, 1082, 1248
FspI TGCGCA 1 cut(s) 890
GlaI GCGC 1 cut(s) 890
GluI GCNGC 1 cut(s) 142
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 3 cut(s) 141, 169, 1234
HhaI GCGC 1 cut(s) 891
Hin6I GCGC 1 cut(s) 889
HinP1I GCGC 1 cut(s) 889
HincII GTYRAC 2 cut(s) 56, 754
HindII GTYRAC 2 cut(s) 56, 754
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 7 cut(s) 438, 485, 617, 653, 706, 870, 1186
HphI GGTGA 4 cut(s) 488, 544, 617, 1024
Hpy166II GTNNAC 5 cut(s) 56, 111, 418, 426, 754
Hpy188I TCNGA 4 cut(s) 257, 514, 598, 898
Hpy188III TCNNGA 6 cut(s) 26, 482, 489, 551, 557, 990
Hpy8I GTNNAC 5 cut(s) 56, 111, 418, 426, 754
Hpy99I CGWCG 1 cut(s) 714
HpyAV CCTTC 3 cut(s) 138, 191, 420
HpyCH4III ACNGT 2 cut(s) 278, 842
HpyCH4IV ACGT 2 cut(s) 103, 178
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 375, 681
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 2 cut(s) 103, 178
HspAI GCGC 1 cut(s) 889
Ksp22I TGATCA 3 cut(s) 478, 661, 805
Kzo9I GATC 8 cut(s) 448, 478, 553, 585, 661, 739, 805, 934
LmnI GCTCC 1 cut(s) 1227
MaeI CTAG 3 cut(s) 774, 1082, 1248
MaeII ACGT 2 cut(s) 103, 178
MaeIII GTNAC 1 cut(s) 761
MalI GATC 8 cut(s) 450, 480, 555, 587, 663, 741, 807, 936
MboI GATC 8 cut(s) 448, 478, 553, 585, 661, 739, 805, 934
MboII GAAGA 7 cut(s) 14, 270, 580, 585, 1046, 1073, 1198
MfeI CAATTG 3 cut(s) 294, 621, 1191
MflI RGATCY 3 cut(s) 585, 739, 934
MhlI GDGCHC 2 cut(s) 113, 1224
MlsI TGGCCA 1 cut(s) 1234
MluNI TGGCCA 1 cut(s) 1234
MlyI GAGTC 4 cut(s) 662, 715, 879, 1195
MmeI TCCRAC 3 cut(s) 183, 717, 941
MnlI CCTC 4 cut(s) 558, 872, 974, 1008
Mox20I TGGCCA 1 cut(s) 1234
MroXI GAANNNNTTC 2 cut(s) 21, 855
MscI TGGCCA 1 cut(s) 1234
MseI TTAA 2 cut(s) 213, 507
MslI CAYNNNNRTG 3 cut(s) 116, 431, 1139
Msp20I TGGCCA 1 cut(s) 1234
MunI CAATTG 3 cut(s) 294, 621, 1191
MwoI GCNNNNNNNGC 3 cut(s) 150, 375, 681
NcoI CCATGG 1 cut(s) 1226
NdeII GATC 8 cut(s) 448, 478, 553, 585, 661, 739, 805, 934
NheI GCTAGC 1 cut(s) 1081
NlaIV GGNNCC 1 cut(s) 741
NmuCI GTSAC 1 cut(s) 761
NsbI TGCGCA 1 cut(s) 890
NspI RCATGY 3 cut(s) 35, 895, 1265
OliI CACNNNNGTG 1 cut(s) 431
PciI ACATGT 1 cut(s) 31
PdmI GAANNNNTTC 2 cut(s) 21, 855
PfeI GAWTC 3 cut(s) 438, 485, 617
PflFI GACNNNGTC 1 cut(s) 908
PflMI CCANNNNNTGG 1 cut(s) 105
PkrI GCNGC 1 cut(s) 143
PleI GAGTC 4 cut(s) 661, 714, 878, 1194
PpsI GAGTC 4 cut(s) 661, 714, 878, 1194
Ppu21I YACGTR 1 cut(s) 179
PscI ACATGT 1 cut(s) 31
Psp1406I AACGTT 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 741
PsuI RGATCY 3 cut(s) 585, 739, 934
PsyI GACNNNGTC 1 cut(s) 908
RsaI GTAC 5 cut(s) 181, 307, 425, 772, 902
RsaNI GTAC 5 cut(s) 180, 306, 424, 771, 901
RseI CAYNNNNRTG 3 cut(s) 116, 431, 1139
SalI GTCGAC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 213, 507
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 8 cut(s) 448, 478, 553, 585, 661, 739, 805, 934
ScaI AGTACT 1 cut(s) 772
SchI GAGTC 4 cut(s) 662, 715, 879, 1195
SduI GDGCHC 2 cut(s) 113, 1224
SmiMI CAYNNNNRTG 3 cut(s) 116, 431, 1139
SnaBI TACGTA 1 cut(s) 179
SsiI CCGC 6 cut(s) 142, 407, 932, 1120, 1256, 1275
SspI AATATT 1 cut(s) 13
SspMI CTAG 3 cut(s) 774, 1082, 1248
StyI CCWWGG 1 cut(s) 1226
TaaI ACNGT 2 cut(s) 278, 842
TaiI ACGT 2 cut(s) 106, 181
TaqI TCGA 1 cut(s) 55
TatI WGTACW 2 cut(s) 423, 770
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 3 cut(s) 438, 485, 617
Tru1I TTAA 2 cut(s) 213, 507
Tru9I TTAA 2 cut(s) 213, 507
TscAI CASTG 1 cut(s) 1032
TseFI GTSAC 1 cut(s) 761
Tsp45I GTSAC 1 cut(s) 761
TspDTI ATGAA 8 cut(s) 124, 213, 360, 430, 736, 1047, 1074, 1129
TspGWI ACGGA 1 cut(s) 702
TspRI CASTG 1 cut(s) 1032
Tth111I GACNNNGTC 1 cut(s) 908
Van91I CCANNNNNTGG 1 cut(s) 105
VneI GTGCAC 1 cut(s) 109
XapI RAATTY 7 cut(s) 45, 71, 206, 560, 718, 830, 1066
XceI RCATGY 3 cut(s) 35, 895, 1265
XcmI CCANNNNNNNNNTGG 1 cut(s) 642
XmiI GTMKAC 2 cut(s) 55, 417
XmnI GAANNNNTTC 2 cut(s) 21, 855
XspI CTAG 3 cut(s) 774, 1082, 1248
ZrmI AGTACT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.