Rh6BG345600

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000216
Physical Location & Seq
Reverse (-)
57724906 .. 57726297
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG345600.1

Sequence Viewer

Length: 1068 bp
ATGTTTGTCGTACATTCATACCCTTTGGAAGATAACGCAGCAGAATTGTTTACAATTGATTCCAAGCAGACTCCTCCTGAGTTAAGAGCAATCGATTTTCGTCCCAGCAAGCTGTTTGTGGTAGCGACATACAGTGACTTGATTTTGTCGTGTGAAACTTTGGGTTTTCAAATGAATTACTACATTTGCAATCCGTACACCAAGCAATGGGTTGCTCTTCCTCCTACCGTACTGTTCCCCCGAACTGATATAGGTGTGGGATTTATCTGTGCTTCCGACTATAGGTGCCGGATTGTACGACTCCTTGATCAGTTTGCAGCAGAACCTGACTTCCGATTGAAGGTAGAGATGTTCTCTTCCGAGACTGGTAAATGGAAAGAATCAGTTGTCCTATGCCCAAAAAGGTTTAGACCTGATCCTCTCAAGCACAGTACACCAGCCCTTGCTTACAATGGAACCTTGTACTGGTTAGGTCGTGGTGGGATTCTTATTGGGTTGGAGCCTTTCAAGATCGACAATAAAAATAACCCTAACTATAATTGTCATTTTATTTCCCGGCCTCGTTTCGAGTTTCCATTGCTTTATGATTCATGCAATTACACCGATTGCCTGGGTGTCTGCCGGGGTTGTGTGAGGATGTGCCGGCTGTATGCTCTGACACGTTTCATTCTTTATGTGTGGGAGCTGAAAGAAGATGGCGGTCGTGAAGTGGATGGAGTTGGAGGCAAAATGATGAAATGGTGTTTAAAGGAGTGGATCTTACTGGACCAAATTGATTCGAAATATATGGTGCCTAATCCCTACTGGCTTCTGGCTTTGGACCCAAATGATGAAGACATGCTGTACCTGCTACGGAGAACTATCAGCTCCGATCCAGAAGACATTGTTAAGTTCAATATTCGTACAGAAACGCTAATTGACATCTCTCCAAAGTTGCCATTCTCTAATCCTAGGACACATATAAAGGCATTTCCATTTATGCTCTCATGGTGGCGGTGGCCAACACCAGTTCCTAAATTAGACCATCGCAACAATAGCATCTGCCCACCGCAAGAAGAAGAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

355

Amino Acids

41.38

Weight (kDa)

6.54

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 36 - 304 1.4e-17 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 855
AccB1I GGYRCC 2 cut(s) 285, 790
AccB7I CCANNNNNTGG 1 cut(s) 207
AciI CCGC 3 cut(s) 699, 994, 1049
AclWI GGATC 3 cut(s) 410, 764, 866
AcoI YGGCCR 1 cut(s) 998
AfaI GTAC 8 cut(s) 12, 197, 231, 297, 433, 464, 845, 904
AfiI CCNNNNNNNGG 4 cut(s) 207, 282, 340, 465
AflIII ACRYGT 1 cut(s) 659
AgsI TTSAA 4 cut(s) 170, 340, 508, 895
AjnI CCWGG 1 cut(s) 609
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 3 cut(s) 112, 685, 867
AluI AGCT 3 cut(s) 112, 685, 867
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 3 cut(s) 410, 764, 866
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 2 cut(s) 557, 998
ApeKI GCWGC 2 cut(s) 38, 317
AspA2I CCTAGG 1 cut(s) 950
AspS9I GGNCC 2 cut(s) 766, 820
AsuC2I CCSGG 2 cut(s) 556, 623
AsuII TTCGAA 1 cut(s) 779
AvaII GGWCC 2 cut(s) 766, 820
AvrII CCTAGG 1 cut(s) 950
BalI TGGCCA 1 cut(s) 1000
BanI GGYRCC 2 cut(s) 285, 790
BbsI GAAGAC 2 cut(s) 840, 885
BbvI GCAGC 2 cut(s) 50, 329
BccI CCATC 3 cut(s) 689, 707, 1032
BciT130I CCWGG 1 cut(s) 611
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 2 cut(s) 556, 623
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 1 cut(s) 951
BfmI CTRYAG 1 cut(s) 280
BfuAI ACCTGC 1 cut(s) 855
BisI GCNGC 2 cut(s) 39, 318
BlnI CCTAGG 1 cut(s) 950
BlsI GCNGC 2 cut(s) 40, 319
Bme1390I CCNGG 3 cut(s) 556, 611, 623
Bme18I GGWCC 2 cut(s) 766, 820
BmgT120I GGNCC 2 cut(s) 766, 820
BmiI GGNNCC 5 cut(s) 287, 457, 501, 792, 822
BmrFI CCNGG 3 cut(s) 556, 611, 623
BmsI GCATC 1 cut(s) 1047
BpiI GAAGAC 2 cut(s) 840, 885
BplI GAGNNNNNCTC 2 cut(s) 338, 370
Bpu14I TTCGAA 1 cut(s) 779
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 2 cut(s) 556, 623
Bsa29I ATCGAT 1 cut(s) 93
BsaJI CCNNGG 3 cut(s) 610, 622, 950
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 282, 340, 465
Bse118I RCCGGY 1 cut(s) 642
Bse1I ACTGG 5 cut(s) 370, 470, 768, 809, 1007
Bse3DI GCAATG 2 cut(s) 212, 575
BseBI CCWGG 1 cut(s) 611
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 3 cut(s) 610, 622, 950
BseGI GGATG 2 cut(s) 642, 718
BseLI CCNNNNNNNGG 4 cut(s) 207, 282, 340, 465
BseMI GCAATG 2 cut(s) 212, 575
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 5 cut(s) 370, 470, 768, 809, 1007
BseRI GAGGAG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 50, 329
BseYI CCCAGC 1 cut(s) 104
Bsh1285I CGRYCG 1 cut(s) 703
BshFI GGCC 2 cut(s) 559, 1000
BshNI GGYRCC 2 cut(s) 285, 790
BshVI ATCGAT 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 703
BsiSI CCGG 4 cut(s) 289, 556, 622, 643
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 4 cut(s) 207, 282, 340, 465
BsmAI GTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 2 cut(s) 559, 1000
Bsp119I TTCGAA 1 cut(s) 779
Bsp143I GATC 5 cut(s) 307, 415, 510, 756, 871
BspACI CCGC 3 cut(s) 699, 994, 1049
BspANI GGCC 2 cut(s) 559, 1000
BspCNI CTCAG 1 cut(s) 70
BspDI ATCGAT 1 cut(s) 93
BspLI GGNNCC 5 cut(s) 287, 457, 501, 792, 822
BspMI ACCTGC 1 cut(s) 855
BspPI GGATC 3 cut(s) 410, 764, 866
BspQI GCTCTTC 1 cut(s) 222
BspT104I TTCGAA 1 cut(s) 779
BspT107I GGYRCC 2 cut(s) 285, 790
BsrDI GCAATG 2 cut(s) 212, 575
BsrFI RCCGGY 1 cut(s) 642
BsrI ACTGG 5 cut(s) 370, 470, 768, 809, 1007
BssAI RCCGGY 1 cut(s) 642
BssECI CCNNGG 3 cut(s) 610, 622, 950
BssMI GATC 5 cut(s) 307, 415, 510, 756, 871
BssT1I CCWWGG 1 cut(s) 950
Bst2UI CCWGG 1 cut(s) 611
Bst4CI ACNGT 4 cut(s) 134, 229, 234, 431
Bst6I CTCTTC 2 cut(s) 222, 361
BstBI TTCGAA 1 cut(s) 779
BstC8I GCNNGC 2 cut(s) 110, 644
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 642, 718
BstKTI GATC 5 cut(s) 310, 418, 513, 759, 874
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 5 cut(s) 307, 415, 510, 756, 871
BstMCI CGRYCG 1 cut(s) 703
BstMWI GCNNNNNNNGC 2 cut(s) 847, 1035
BstNI CCWGG 1 cut(s) 611
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 3 cut(s) 554, 609, 621
BstSFI CTRYAG 1 cut(s) 280
BstV1I GCAGC 2 cut(s) 50, 329
BstV2I GAAGAC 2 cut(s) 840, 885
BstX2I RGATCY 1 cut(s) 756
BstYI RGATCY 1 cut(s) 756
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 2 cut(s) 559, 1000
BsuTUI ATCGAT 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 1010
BtsCI GGATG 2 cut(s) 642, 718
BtsIMutI CAGTG 1 cut(s) 139
BveI ACCTGC 1 cut(s) 855
Cac8I GCNNGC 2 cut(s) 110, 644
CaiI CAGNNNCTG 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 642
Cfr13I GGNCC 2 cut(s) 766, 820
ClaI ATCGAT 1 cut(s) 93
Csp6I GTAC 8 cut(s) 11, 196, 230, 296, 432, 463, 844, 903
CviAII CATG 3 cut(s) 591, 838, 987
CviQI GTAC 8 cut(s) 11, 196, 230, 296, 432, 463, 844, 903
DdeI CTNAG 1 cut(s) 78
DpnI GATC 5 cut(s) 309, 417, 512, 758, 873
DpnII GATC 5 cut(s) 307, 415, 510, 756, 871
DraI TTTAAA 1 cut(s) 747
EaeI YGGCCR 1 cut(s) 998
Eam1104I CTCTTC 2 cut(s) 222, 361
EarI CTCTTC 2 cut(s) 222, 361
Eco130I CCWWGG 1 cut(s) 950
Eco47I GGWCC 2 cut(s) 766, 820
EcoRII CCWGG 1 cut(s) 609
EcoT14I CCWWGG 1 cut(s) 950
ErhI CCWWGG 1 cut(s) 950
FaeI CATG 3 cut(s) 594, 841, 990
FaqI GGGAC 1 cut(s) 87
FatI CATG 3 cut(s) 590, 837, 986
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 2 cut(s) 39, 318
FokI GGATG 2 cut(s) 649, 725
Fsp4HI GCNGC 2 cut(s) 39, 318
FspBI CTAG 1 cut(s) 951
GluI GCNGC 2 cut(s) 39, 318
GsaI CCCAGC 1 cut(s) 108
HaeIII GGCC 2 cut(s) 559, 1000
HapII CCGG 4 cut(s) 289, 556, 622, 643
Hin1II CATG 3 cut(s) 594, 841, 990
HinfI GANTC 8 cut(s) 59, 70, 300, 380, 484, 587, 776, 1061
HpaII CCGG 4 cut(s) 289, 556, 622, 643
Hpy166II GTNNAC 3 cut(s) 51, 198, 434
Hpy188I TCNGA 5 cut(s) 277, 335, 361, 657, 871
Hpy188III TCNNGA 4 cut(s) 77, 508, 704, 875
Hpy8I GTNNAC 3 cut(s) 51, 198, 434
HpyAV CCTTC 1 cut(s) 334
HpyCH4III ACNGT 4 cut(s) 134, 229, 234, 431
HpyCH4IV ACGT 1 cut(s) 661
HpyCH4V TGCA 3 cut(s) 189, 317, 594
HpyF10VI GCNNNNNNNGC 2 cut(s) 847, 1035
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 661
Hsp92II CATG 3 cut(s) 594, 841, 990
KroI GCCGGC 1 cut(s) 642
KroNI GCCGGC 1 cut(s) 644
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 5 cut(s) 307, 415, 510, 756, 871
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 3 cut(s) 499, 682, 872
Lsp1109I GCAGC 2 cut(s) 50, 329
LweI GCATC 1 cut(s) 1047
MaeI CTAG 1 cut(s) 951
MaeII ACGT 1 cut(s) 661
MaeIII GTNAC 1 cut(s) 134
MalI GATC 5 cut(s) 309, 417, 512, 758, 873
MboI GATC 5 cut(s) 307, 415, 510, 756, 871
MboII GAAGA 7 cut(s) 41, 209, 348, 704, 845, 890, 1067
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 1 cut(s) 756
MlsI TGGCCA 1 cut(s) 1000
MluCI AATT 8 cut(s) 44, 54, 175, 538, 595, 771, 915, 1016
MluNI TGGCCA 1 cut(s) 1000
MlyI GAGTC 2 cut(s) 64, 294
MmeI TCCRAC 3 cut(s) 300, 477, 700
MnlI CCTC 6 cut(s) 84, 231, 429, 570, 627, 716
Mox20I TGGCCA 1 cut(s) 1000
MroNI GCCGGC 1 cut(s) 642
MscI TGGCCA 1 cut(s) 1000
MseI TTAA 3 cut(s) 83, 746, 888
Msp20I TGGCCA 1 cut(s) 1000
MspI CCGG 4 cut(s) 289, 556, 622, 643
MspR9I CCNGG 3 cut(s) 556, 611, 623
MunI CAATTG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 611
MwoI GCNNNNNNNGC 2 cut(s) 847, 1035
NaeI GCCGGC 1 cut(s) 644
NciI CCSGG 2 cut(s) 556, 623
NdeII GATC 5 cut(s) 307, 415, 510, 756, 871
NgoMIV GCCGGC 1 cut(s) 642
NlaIII CATG 3 cut(s) 594, 841, 990
NlaIV GGNNCC 5 cut(s) 287, 457, 501, 792, 822
NmuCI GTSAC 1 cut(s) 134
NspI RCATGY 1 cut(s) 841
NspV TTCGAA 1 cut(s) 779
PciSI GCTCTTC 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 644
PfeI GAWTC 6 cut(s) 59, 380, 484, 587, 776, 1061
PflMI CCANNNNNTGG 1 cut(s) 207
PkrI GCNGC 2 cut(s) 40, 319
PleI GAGTC 2 cut(s) 64, 294
PpsI GAGTC 2 cut(s) 64, 294
Psp6I CCWGG 1 cut(s) 609
PspFI CCCAGC 1 cut(s) 104
PspGI CCWGG 1 cut(s) 609
PspN4I GGNNCC 5 cut(s) 287, 457, 501, 792, 822
PspPI GGNCC 2 cut(s) 766, 820
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 1 cut(s) 756
RsaI GTAC 8 cut(s) 12, 197, 231, 297, 433, 464, 845, 904
RsaNI GTAC 8 cut(s) 11, 196, 230, 296, 432, 463, 844, 903
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 3 cut(s) 83, 746, 888
SatI GCNGC 2 cut(s) 39, 318
Sau3AI GATC 5 cut(s) 307, 415, 510, 756, 871
Sau96I GGNCC 2 cut(s) 766, 820
SchI GAGTC 2 cut(s) 64, 294
ScrFI CCNGG 3 cut(s) 556, 611, 623
SfaNI GCATC 1 cut(s) 1047
SfcI CTRYAG 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 779
SinI GGWCC 2 cut(s) 766, 820
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 8 cut(s) 44, 54, 175, 538, 595, 771, 915, 1016
SsiI CCGC 3 cut(s) 699, 994, 1049
SspI AATATT 1 cut(s) 898
SspMI CTAG 1 cut(s) 951
StyD4I CCNGG 3 cut(s) 554, 609, 621
StyI CCWWGG 1 cut(s) 950
TaaI ACNGT 4 cut(s) 134, 229, 234, 431
TaiI ACGT 1 cut(s) 664
TaqI TCGA 4 cut(s) 93, 513, 567, 779
TasI AATT 8 cut(s) 44, 54, 175, 538, 595, 771, 915, 1016
TatI WGTACW 2 cut(s) 431, 462
TfiI GAWTC 6 cut(s) 59, 380, 484, 587, 776, 1061
Tru1I TTAA 3 cut(s) 83, 746, 888
Tru9I TTAA 3 cut(s) 83, 746, 888
TscAI CASTG 1 cut(s) 139
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 2 cut(s) 38, 317
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 6 cut(s) 6, 188, 579, 655, 749, 846
TspGWI ACGGA 2 cut(s) 183, 868
TspRI CASTG 1 cut(s) 139
Van91I CCANNNNNTGG 1 cut(s) 207
VpaK11BI GGWCC 2 cut(s) 766, 820
XceI RCATGY 1 cut(s) 841
XmaJI CCTAGG 1 cut(s) 950
XspI CTAG 1 cut(s) 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.