Rmu_ssc0000076.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000076.1
OG0000216
Physical Location & Seq
Forward (+)
91482 .. 93708
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000076.1_g000019.1.cds

Sequence Viewer

Length: 681 bp
atgcgcagcaccagagggttggtcctcgacaccgaagtctggaagagagaggtaggctgcggtgggttgagcgtcggagccggaaacggcctggctcgtgcgtcggagccggagtttgattgtttggttccagctgccatgagaggtggtgatagtaccaaaagaatctactctagaaaatcccagtcgaccttgggagcaataccggcctctgagctgatgaatattgaaattaatgatctcccggatattgtgttggttgaaattctttgtcggcttccatgctataagtttgtttcaaaatgcaagtccgtgtccaagcgttggtgcaatgtcatgtccggtccttattttcttggccgctttctacgtctccagagtgatcgtgagcaaacaccaatagttcgtactctgataaccaacaaaggggaggagttccttactagaatgtcatcgtccgccaagccgctagctctgttgtttgaaagacgcatgagttctcaccatttggaacaagaaccagtagtgtacgttcagtgtgttcctgttcctccccctcctcgagtttacgggtatacaccagtgggattcatgtgtgatcttccctactataactgtgtacgaaagatgatcagggaggaagtttcattcaggtcaatgctgagtataggtgcaggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

226

Amino Acids

25.31

Weight (kDa)

9.1

Isoelectric Point (pI)

63.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 35
Acc16I TGCGCA 1 cut(s) 5
AccB7I CCANNNNNTGG 1 cut(s) 324
AccI GTMKAC 2 cut(s) 188, 575
AciI CCGC 4 cut(s) 60, 361, 459, 467
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 1 cut(s) 264
AfaI GTAC 4 cut(s) 157, 409, 530, 621
AfiI CCNNNNNNNGG 3 cut(s) 39, 324, 426
AgsI TTSAA 4 cut(s) 230, 263, 300, 485
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 3 cut(s) 134, 217, 473
AluI AGCT 3 cut(s) 134, 217, 473
Alw26I GTCTC 1 cut(s) 377
Ama87I CYCGRG 1 cut(s) 561
AoxI GGCC 3 cut(s) 88, 207, 358
ApeKI GCWGC 3 cut(s) 6, 57, 134
ApoI RAATTY 1 cut(s) 264
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AseI ATTAAT 1 cut(s) 234
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 2 cut(s) 22, 344
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 161, 494
AsuNHI GCTAGC 1 cut(s) 469
AvaI CYCGRG 1 cut(s) 561
AvaII GGWCC 2 cut(s) 22, 344
BauI CACGAG 1 cut(s) 96
BbvI GCAGC 3 cut(s) 18, 44, 121
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 92
BclI TGATCA 1 cut(s) 630
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 377
BfaI CTAG 3 cut(s) 174, 444, 470
BisI GCNGC 5 cut(s) 7, 58, 135, 361, 467
BlsI GCNGC 5 cut(s) 8, 59, 136, 362, 468
Bme1390I CCNGG 2 cut(s) 92, 245
Bme18I GGWCC 2 cut(s) 22, 344
BmeT110I CYCGRG 1 cut(s) 561
BmgT120I GGNCC 2 cut(s) 22, 344
BmiI GGNNCC 3 cut(s) 79, 108, 129
BmrFI CCNGG 2 cut(s) 92, 245
BmrI ACTGGG 1 cut(s) 178
BmtI GCTAGC 1 cut(s) 473
BmuI ACTGGG 1 cut(s) 178
BpmI CTGGAG 1 cut(s) 359
BpuMI CCSGG 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 39, 324, 426
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 3 cut(s) 184, 521, 581
Bse3DI GCAATG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 192
BseLI CCNNNNNNNGG 3 cut(s) 39, 324, 426
BseMI GCAATG 1 cut(s) 337
BseMII CTCAG 2 cut(s) 204, 653
BseNI ACTGG 3 cut(s) 184, 521, 581
BseRI GAGGAG 2 cut(s) 446, 549
BseXI GCAGC 3 cut(s) 18, 44, 121
BshFI GGCC 3 cut(s) 90, 209, 360
BsiHKCI CYCGRG 1 cut(s) 561
BsiSI CCGG 5 cut(s) 81, 110, 206, 245, 342
BslI CCNNNNNNNGG 3 cut(s) 39, 324, 426
BsmAI GTCTC 1 cut(s) 377
BsmBI CGTCTC 1 cut(s) 377
BsnI GGCC 3 cut(s) 90, 209, 360
BsoBI CYCGRG 1 cut(s) 561
Bsp143I GATC 4 cut(s) 238, 382, 598, 630
BspACI CCGC 4 cut(s) 60, 361, 459, 467
BspANI GGCC 3 cut(s) 90, 209, 360
BspCNI CTCAG 2 cut(s) 205, 654
BspLI GGNNCC 3 cut(s) 79, 108, 129
BspOI GCTAGC 1 cut(s) 473
BsrDI GCAATG 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 205
BsrI ACTGG 3 cut(s) 184, 521, 581
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 4 cut(s) 238, 382, 598, 630
BssNAI GTATAC 1 cut(s) 576
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 192
Bst1107I GTATAC 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 617
Bst6I CTCTTC 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 2 cut(s) 213, 662
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 4 cut(s) 241, 385, 601, 633
BstMAI GTCTC 1 cut(s) 377
BstMBI GATC 4 cut(s) 238, 382, 598, 630
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 90, 243
BstV1I GCAGC 3 cut(s) 18, 44, 121
BstXI CCANNNNNNTGG 1 cut(s) 19
BstZ17I GTATAC 1 cut(s) 576
BsuRI GGCC 3 cut(s) 90, 209, 360
BtsIMutI CAGTG 2 cut(s) 542, 588
Cac8I GCNNGC 1 cut(s) 471
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 22, 344
CseI GACGC 3 cut(s) 61, 90, 498
Csp6I GTAC 4 cut(s) 156, 408, 529, 620
CviAII CATG 5 cut(s) 139, 282, 337, 493, 592
CviQI GTAC 4 cut(s) 156, 408, 529, 620
DdeI CTNAG 2 cut(s) 213, 662
DpnI GATC 4 cut(s) 240, 384, 600, 632
DpnII GATC 4 cut(s) 238, 382, 598, 630
DrdI GACNNNNNNGTC 1 cut(s) 35
DseDI GACNNNNNNGTC 1 cut(s) 35
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 448
Eco130I CCWWGG 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 22, 344
Eco88I CYCGRG 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 377
FaeI CATG 5 cut(s) 142, 285, 340, 496, 595
FaiI YATR 9 cut(s) 140, 283, 288, 338, 494, 576, 593, 612, 668
FatI CATG 5 cut(s) 138, 281, 336, 492, 591
FbaI TGATCA 1 cut(s) 630
FblI GTMKAC 2 cut(s) 188, 575
Fnu4HI GCNGC 5 cut(s) 7, 58, 135, 361, 467
Fsp4HI GCNGC 5 cut(s) 7, 58, 135, 361, 467
FspBI CTAG 3 cut(s) 174, 444, 470
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 5 cut(s) 7, 58, 135, 361, 467
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 3 cut(s) 90, 209, 360
HapII CCGG 5 cut(s) 81, 110, 206, 245, 342
HgaI GACGC 3 cut(s) 61, 90, 498
HhaI GCGC 1 cut(s) 6
Hin1II CATG 5 cut(s) 142, 285, 340, 496, 595
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HinfI GANTC 2 cut(s) 165, 588
HpaII CCGG 5 cut(s) 81, 110, 206, 245, 342
HphI GGTGA 2 cut(s) 161, 494
Hpy166II GTNNAC 5 cut(s) 189, 529, 568, 576, 620
Hpy188I TCNGA 4 cut(s) 77, 106, 214, 414
Hpy188III TCNNGA 4 cut(s) 40, 174, 376, 386
Hpy8I GTNNAC 5 cut(s) 189, 529, 568, 576, 620
Hpy99I CGWCG 2 cut(s) 77, 106
HpyCH4III ACNGT 1 cut(s) 617
HpyCH4IV ACGT 2 cut(s) 370, 531
HpyCH4V TGCA 3 cut(s) 306, 330, 674
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 2 cut(s) 213, 662
HpySE526I ACGT 2 cut(s) 370, 531
Hsp92II CATG 5 cut(s) 142, 285, 340, 496, 595
HspAI GCGC 1 cut(s) 4
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 4 cut(s) 238, 382, 598, 630
LmnI GCTCC 3 cut(s) 77, 106, 197
Lsp1109I GCAGC 3 cut(s) 18, 44, 121
MaeI CTAG 3 cut(s) 174, 444, 470
MaeII ACGT 2 cut(s) 370, 531
MalI GATC 4 cut(s) 240, 384, 600, 632
MboI GATC 4 cut(s) 238, 382, 598, 630
MboII GAAGA 2 cut(s) 55, 593
MluCI AATT 2 cut(s) 231, 264
MmeI TCCRAC 2 cut(s) 55, 84
MseI TTAA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 5 cut(s) 81, 110, 206, 245, 342
MspR9I CCNGG 2 cut(s) 92, 245
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 245
NdeII GATC 4 cut(s) 238, 382, 598, 630
NheI GCTAGC 1 cut(s) 469
NlaIII CATG 5 cut(s) 142, 285, 340, 496, 595
NlaIV GGNNCC 3 cut(s) 79, 108, 129
NsbI TGCGCA 1 cut(s) 5
PaeR7I CTCGAG 1 cut(s) 561
PfeI GAWTC 2 cut(s) 165, 588
PflMI CCANNNNNTGG 1 cut(s) 324
PfoI TCCNGGA 1 cut(s) 243
PkrI GCNGC 5 cut(s) 8, 59, 136, 362, 468
PshBI ATTAAT 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 3 cut(s) 79, 108, 129
PspPI GGNCC 2 cut(s) 22, 344
PspXI VCTCGAGB 1 cut(s) 561
PsrI GAACNNNNNNTAC 2 cut(s) 516, 548
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 4 cut(s) 157, 409, 530, 621
RsaNI GTAC 4 cut(s) 156, 408, 529, 620
SalI GTCGAC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 5 cut(s) 7, 58, 135, 361, 467
Sau3AI GATC 4 cut(s) 238, 382, 598, 630
Sau96I GGNCC 2 cut(s) 22, 344
ScrFI CCNGG 2 cut(s) 92, 245
Sfr274I CTCGAG 1 cut(s) 561
SinI GGWCC 2 cut(s) 22, 344
SlaI CTCGAG 1 cut(s) 561
SmlI CTYRAG 1 cut(s) 561
SmoI CTYRAG 1 cut(s) 561
Sse9I AATT 2 cut(s) 231, 264
SsiI CCGC 4 cut(s) 60, 361, 459, 467
SspI AATATT 1 cut(s) 226
SspMI CTAG 3 cut(s) 174, 444, 470
StyD4I CCNGG 2 cut(s) 90, 243
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 617
TaiI ACGT 2 cut(s) 373, 534
TaqI TCGA 3 cut(s) 27, 188, 562
TasI AATT 2 cut(s) 231, 264
TauI GCSGC 2 cut(s) 363, 469
TfiI GAWTC 2 cut(s) 165, 588
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 2 cut(s) 542, 588
TseI GCWGC 3 cut(s) 6, 57, 134
TspDTI ATGAA 3 cut(s) 236, 580, 636
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 2 cut(s) 542, 588
Van91I CCANNNNNTGG 1 cut(s) 324
VpaK11BI GGWCC 2 cut(s) 22, 344
VspI ATTAAT 1 cut(s) 234
XapI RAATTY 1 cut(s) 264
XbaI TCTAGA 1 cut(s) 173
XhoI CTCGAG 1 cut(s) 561
XmiI GTMKAC 2 cut(s) 188, 575
XspI CTAG 3 cut(s) 174, 444, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.