MD04G1181200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000216
Physical Location & Seq
Forward (+)
27206869 .. 27207569
701 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1181200.v1.1.491

Sequence Viewer

Length: 294 bp
ATGCATCCTGCCATGAGAGGCCATAACAGTACTATTGGTGCGAAGAGTGGCCGCAGTAGAATAAGCCAGTCATCCCCTAGAGCAGTACCGCCCTCGGTTAATATTTGTCACTCAAGAAGAGGGCATTCTTTAGCATCAGCAACAACATCAAGTTGGCCATCATCAAAATTCATGAACAGCAATATTGATGATCTACCGGACTCTTTATTGGCTGAAATCTTTTGTCGACTTCCTTCCTATAAGTCCGTTTCACAATGCAAGTGCGTTTCCAAGCGTTGGTGCATTCTCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

98

Amino Acids

10.63

Weight (kDa)

10.08

Isoelectric Point (pI)

88.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 62 - 96 8e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 276
AccI GTMKAC 1 cut(s) 226
AciI CCGC 2 cut(s) 52, 89
AcoI YGGCCR 2 cut(s) 49, 155
AcsI RAATTY 1 cut(s) 167
AfaI GTAC 2 cut(s) 31, 87
AfiI CCNNNNNNNGG 1 cut(s) 276
AoxI GGCC 3 cut(s) 19, 49, 155
ApoI RAATTY 1 cut(s) 167
BalI TGGCCA 1 cut(s) 157
BccI CCATC 1 cut(s) 166
BfaI CTAG 1 cut(s) 78
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
BmcAI AGTACT 1 cut(s) 31
BmsI GCATC 2 cut(s) 13, 143
BpuEI CTTGAG 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 93
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse1I ACTGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 4, 71
BseLI CCNNNNNNNGG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 67
BshFI GGCC 3 cut(s) 21, 51, 157
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 276
BsmI GAATGC 2 cut(s) 124, 282
BsnI GGCC 3 cut(s) 21, 51, 157
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 2 cut(s) 52, 89
BspANI GGCC 3 cut(s) 21, 51, 157
BspHI TCATGA 1 cut(s) 171
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 2 cut(s) 38, 112
BstF5I GGATG 2 cut(s) 4, 71
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BsuRI GGCC 3 cut(s) 21, 51, 157
BtsCI GGATG 2 cut(s) 4, 71
CciI TCATGA 1 cut(s) 171
Csp6I GTAC 2 cut(s) 30, 86
CviAII CATG 2 cut(s) 13, 172
CviJI RGCY 5 cut(s) 21, 51, 66, 157, 212
CviKI_1 RGCY 5 cut(s) 21, 51, 66, 157, 212
CviQI GTAC 2 cut(s) 30, 86
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 2 cut(s) 49, 155
Eam1104I CTCTTC 2 cut(s) 38, 112
EarI CTCTTC 2 cut(s) 38, 112
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 16, 175
FaiI YATR 4 cut(s) 14, 24, 173, 240
FatI CATG 2 cut(s) 12, 171
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 52
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 52
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 52
HaeIII GGCC 3 cut(s) 21, 51, 157
HapII CCGG 1 cut(s) 197
Hin1II CATG 2 cut(s) 16, 175
HincII GTYRAC 1 cut(s) 227
HindII GTYRAC 1 cut(s) 227
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 227
Hpy188III TCNNGA 2 cut(s) 114, 172
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 243
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 3 cut(s) 4, 258, 282
Hsp92II CATG 2 cut(s) 16, 175
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 3 cut(s) 21, 80, 210
LweI GCATC 2 cut(s) 13, 143
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 2 cut(s) 55, 129
MlsI TGGCCA 1 cut(s) 157
MluCI AATT 1 cut(s) 167
MluNI TGGCCA 1 cut(s) 157
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 3 cut(s) 11, 103, 113
Mox20I TGGCCA 1 cut(s) 157
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 157
MseI TTAA 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 157
MspI CCGG 1 cut(s) 197
Mva1269I GAATGC 2 cut(s) 124, 282
NdeII GATC 1 cut(s) 190
NlaIII CATG 2 cut(s) 16, 175
NmuCI GTSAC 1 cut(s) 107
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 171
PctI GAATGC 2 cut(s) 124, 282
PflMI CCANNNNNTGG 1 cut(s) 276
PkrI GCNGC 1 cut(s) 53
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
RsaI GTAC 2 cut(s) 31, 87
RsaNI GTAC 2 cut(s) 30, 86
SalI GTCGAC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 1 cut(s) 190
ScaI AGTACT 1 cut(s) 31
SchI GAGTC 1 cut(s) 194
SfaNI GCATC 2 cut(s) 13, 143
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 1 cut(s) 167
SsiI CCGC 2 cut(s) 52, 89
SspI AATATT 2 cut(s) 103, 184
SspMI CTAG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 226
TasI AATT 1 cut(s) 167
TatI WGTACW 1 cut(s) 29
TauI GCSGC 1 cut(s) 54
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseFI GTSAC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 160, 188
TspGWI ACGGA 1 cut(s) 235
Van91I CCANNNNNTGG 1 cut(s) 276
XapI RAATTY 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 226
XspI CTAG 1 cut(s) 78
ZrmI AGTACT 1 cut(s) 31
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.