MD04G1180900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000216
Physical Location & Seq
Forward (+)
27157821 .. 27159281
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1180900.v1.1.491

Sequence Viewer

Length: 621 bp
ATGAACAGCAATATCGATGATTTACCGGACTCTTTATTGGCTGAAATCTTTTGTCGACTTCCTTCCTATAAGTCCGTTTCACAATGCAAGTGCGTTTCCAAGCGTTGGTGCACTCTCATTTCAGATCCTCATTTTATTGGCTGTTTTCTATACCTCCAAAGGGATCGTAAGCAAAAGCCAATAACTACTGCAATAAATTCAGAAGGGGAGGAATTCCTTAAAAGAATGTCCCCGTCCTCTAAACCGTTGAATCAACTTTTCCAAAGACTGGTGAGTTTCCACAGTTTGAAACAAGAGCCAGTTGTGGTAGGTACGTATAATGACTTAGTTCTGTGCTGCGCAAGCAAGTTTAACCAGCGGGATTACTACATCTGCAATCCATACACAATCCAGTGGATCTTCTCTTCTGAGACTGGTGAATGGAGGGAGACAACTGTGATATCTGCGTTCAACTTTAATTTGAAAAAAATGAGTCCCAGTATAGCCTGTATTGGACGAGTGAGGAGACATTCTTATTCGGTTGGATCCGTTCATGATCTGAGAAGAGTGCTATTGCTAGTTTATCTACTACAACCTGTTATAGACGTTGTTTTAGTCATGAGTGGGACTTTGTTCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

207

Amino Acids

23.72

Weight (kDa)

8.97

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 44 1.4e-08 F-box-like
F-box PF00646 5 - 45 6.5e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 340
AccB7I CCANNNNNTGG 2 cut(s) 105, 268
AccI GTMKAC 1 cut(s) 55
AciI CCGC 1 cut(s) 358
AclWI GGATC 5 cut(s) 119, 171, 404, 519, 532
AcsI RAATTY 2 cut(s) 196, 212
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 3 cut(s) 105, 160, 268
AgsI TTSAA 4 cut(s) 250, 289, 451, 463
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 3 cut(s) 404, 422, 499
Alw44I GTGCAC 1 cut(s) 109
AlwI GGATC 5 cut(s) 119, 171, 404, 519, 532
ApaLI GTGCAC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 336
ApoI RAATTY 2 cut(s) 196, 212
AspLEI GCGC 1 cut(s) 341
AsuHPI GGTGA 2 cut(s) 283, 428
BaeGI GKGCMC 1 cut(s) 113
BamHI GGATCC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 113
BbvI GCAGC 1 cut(s) 323
BcoDI GTCTC 3 cut(s) 404, 422, 499
BfaI CTAG 1 cut(s) 557
BisI GCNGC 1 cut(s) 337
BlsI GCNGC 1 cut(s) 338
BmiI GGNNCC 1 cut(s) 526
BmrI ACTGGG 1 cut(s) 471
BmuI ACTGGG 1 cut(s) 471
Bsa29I ATCGAT 1 cut(s) 15
BsaAI YACGTR 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 160, 268
Bse1I ACTGG 6 cut(s) 273, 299, 391, 418, 477, 616
BseCI ATCGAT 1 cut(s) 15
BseLI CCNNNNNNNGG 3 cut(s) 105, 160, 268
BseMII CTCAG 2 cut(s) 399, 530
BseNI ACTGG 6 cut(s) 273, 299, 391, 418, 477, 616
BseRI GAGGAG 1 cut(s) 517
BseSI GKGCMC 1 cut(s) 113
BseXI GCAGC 1 cut(s) 323
BshVI ATCGAT 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 2 cut(s) 214, 459
BslI CCNNNNNNNGG 3 cut(s) 105, 160, 268
BsmAI GTCTC 3 cut(s) 404, 422, 499
BsmFI GGGAC 2 cut(s) 214, 459
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 5 cut(s) 124, 163, 396, 524, 535
BspACI CCGC 1 cut(s) 358
BspCNI CTCAG 2 cut(s) 400, 531
BspDI ATCGAT 1 cut(s) 15
BspHI TCATGA 2 cut(s) 532, 597
BspLI GGNNCC 1 cut(s) 526
BspPI GGATC 5 cut(s) 119, 171, 404, 519, 532
BsrI ACTGG 6 cut(s) 273, 299, 391, 418, 477, 616
BssMI GATC 5 cut(s) 124, 163, 396, 524, 535
Bst4CI ACNGT 3 cut(s) 246, 284, 436
Bst6I CTCTTC 2 cut(s) 409, 538
BstBAI YACGTR 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 3 cut(s) 325, 408, 539
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 5 cut(s) 127, 166, 399, 527, 538
BstMAI GTCTC 3 cut(s) 404, 422, 499
BstMBI GATC 5 cut(s) 124, 163, 396, 524, 535
BstMWI GCNNNNNNNGC 1 cut(s) 342
BstSLI GKGCMC 1 cut(s) 113
BstSNI TACGTA 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 323
BstX2I RGATCY 3 cut(s) 124, 396, 524
BstYI RGATCY 3 cut(s) 124, 396, 524
Bsu15I ATCGAT 1 cut(s) 15
BsuTUI ATCGAT 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 1 cut(s) 343
CciI TCATGA 2 cut(s) 532, 597
CfoI GCGC 1 cut(s) 341
ClaI ATCGAT 1 cut(s) 15
Csp6I GTAC 1 cut(s) 312
CviAII CATG 2 cut(s) 533, 598
CviJI RGCY 5 cut(s) 41, 141, 178, 298, 485
CviKI_1 RGCY 5 cut(s) 41, 141, 178, 298, 485
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 3 cut(s) 325, 408, 539
DpnI GATC 5 cut(s) 126, 165, 398, 526, 537
DpnII GATC 5 cut(s) 124, 163, 396, 524, 535
Eam1104I CTCTTC 2 cut(s) 409, 538
EarI CTCTTC 2 cut(s) 409, 538
Eco105I TACGTA 1 cut(s) 315
Eco32I GATATC 1 cut(s) 441
EcoRI GAATTC 1 cut(s) 212
EcoRV GATATC 1 cut(s) 441
FaeI CATG 2 cut(s) 536, 601
FaiI YATR 8 cut(s) 69, 151, 318, 382, 482, 534, 581, 599
FaqI GGGAC 2 cut(s) 214, 459
FatI CATG 2 cut(s) 532, 597
FauI CCCGC 1 cut(s) 351
FblI GTMKAC 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 337
Fsp4HI GCNGC 1 cut(s) 337
FspBI CTAG 1 cut(s) 557
FspI TGCGCA 1 cut(s) 340
GlaI GCGC 1 cut(s) 340
GluI GCNGC 1 cut(s) 337
HapII CCGG 1 cut(s) 26
HhaI GCGC 1 cut(s) 341
Hin1II CATG 2 cut(s) 536, 601
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HincII GTYRAC 1 cut(s) 56
HindII GTYRAC 1 cut(s) 56
HinfI GANTC 3 cut(s) 29, 250, 472
HpaII CCGG 1 cut(s) 26
HphI GGTGA 2 cut(s) 283, 428
Hpy166II GTNNAC 2 cut(s) 56, 111
Hpy188I TCNGA 4 cut(s) 124, 202, 409, 540
Hpy188III TCNNGA 2 cut(s) 533, 598
Hpy8I GTNNAC 2 cut(s) 56, 111
HpyAV CCTTC 2 cut(s) 72, 197
HpyCH4III ACNGT 3 cut(s) 246, 284, 436
HpyCH4IV ACGT 2 cut(s) 314, 585
HpyCH4V TGCA 4 cut(s) 87, 111, 191, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 342
HpyF3I CTNAG 3 cut(s) 325, 408, 539
HpySE526I ACGT 2 cut(s) 314, 585
Hsp92II CATG 2 cut(s) 536, 601
HspAI GCGC 1 cut(s) 339
Kzo9I GATC 5 cut(s) 124, 163, 396, 524, 535
LpnPI CCDG 9 cut(s) 39, 254, 312, 368, 399, 404, 490, 499, 588
Lsp1109I GCAGC 1 cut(s) 323
MaeI CTAG 1 cut(s) 557
MaeII ACGT 2 cut(s) 314, 585
MalI GATC 5 cut(s) 126, 165, 398, 526, 537
MboI GATC 5 cut(s) 124, 163, 396, 524, 535
MboII GAAGA 3 cut(s) 391, 396, 555
MflI RGATCY 3 cut(s) 124, 396, 524
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 3 cut(s) 196, 212, 457
MlyI GAGTC 2 cut(s) 23, 481
MmeI TCCRAC 1 cut(s) 502
MnlI CCTC 6 cut(s) 138, 164, 202, 247, 417, 495
MseI TTAA 3 cut(s) 219, 351, 456
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 342
NdeII GATC 5 cut(s) 124, 163, 396, 524, 535
NlaIII CATG 2 cut(s) 536, 601
NlaIV GGNNCC 1 cut(s) 526
NsbI TGCGCA 1 cut(s) 340
PagI TCATGA 2 cut(s) 532, 597
PfeI GAWTC 1 cut(s) 250
PflMI CCANNNNNTGG 2 cut(s) 105, 268
PkrI GCNGC 1 cut(s) 338
PleI GAGTC 2 cut(s) 23, 480
PpsI GAGTC 2 cut(s) 23, 480
Ppu21I YACGTR 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 526
PsuI RGATCY 3 cut(s) 124, 396, 524
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SalI GTCGAC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 219, 351, 456
SatI GCNGC 1 cut(s) 337
Sau3AI GATC 5 cut(s) 124, 163, 396, 524, 535
SchI GAGTC 2 cut(s) 23, 481
SduI GDGCHC 1 cut(s) 113
SetI ASST 5 cut(s) 156, 313, 317, 577, 588
SnaBI TACGTA 1 cut(s) 315
Sse9I AATT 3 cut(s) 196, 212, 457
SsiI CCGC 1 cut(s) 358
SspMI CTAG 1 cut(s) 557
TaaI ACNGT 3 cut(s) 246, 284, 436
TaiI ACGT 2 cut(s) 317, 588
TaqI TCGA 2 cut(s) 15, 55
TasI AATT 3 cut(s) 196, 212, 457
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 3 cut(s) 219, 351, 456
Tru9I TTAA 3 cut(s) 219, 351, 456
TscAI CASTG 1 cut(s) 398
TseI GCWGC 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 17, 521
TspGWI ACGGA 2 cut(s) 64, 517
TspRI CASTG 1 cut(s) 398
Van91I CCANNNNNTGG 2 cut(s) 105, 268
VneI GTGCAC 1 cut(s) 109
XapI RAATTY 2 cut(s) 196, 212
XmiI GTMKAC 1 cut(s) 55
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.