FvH4_6g32061

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
25158956 .. 25160613
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32061.t1

Sequence Viewer

Length: 360 bp
ATGACTACTTCTTTGTTCAACATGACTGCTACTTCATCTGCAATCCATGCACGAGTCCAATGTGTTCCTGTTCCACCACCTCCTCAAGTCTACAAGCACAAGTACACGCCAGTAGGATCCATCTGCGATCTTCCCTGCTGTAACTTTAGGCCAACAGGCGATCAGGGAGGAAGAGTGTACAAAGGGTGTTTGCGGATGTACCAGTATGACAGTGGAACACGTAATCTATATGTGGTGGACTTGAAGGATGAACAAGTGCTTCTGGATCAGATTTGGGTTTATACACTGATGGAAGAGATTATTCCAAGTCCTGATACTGTGGTCACAATTAAAGGTTTCGACCCAGATAATGATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.43

Weight (kDa)

5.53

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 193
AclWI GGATC 3 cut(s) 111, 124, 273
AfaI GTAC 3 cut(s) 104, 179, 200
AflIII ACRYGT 1 cut(s) 218
AgsI TTSAA 2 cut(s) 19, 244
AlwI GGATC 3 cut(s) 111, 124, 273
AoxI GGCC 1 cut(s) 149
ArsI GACNNNNNNTTYG 1 cut(s) 27
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BamHI GGATCC 1 cut(s) 116
BauI CACGAG 1 cut(s) 51
BccI CCATC 2 cut(s) 128, 283
BmiI GGNNCC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 69
Bsa29I ATCGAT 1 cut(s) 355
BsaAI YACGTR 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bse1I ACTGG 2 cut(s) 110, 202
Bse8I GATNNNNATC 1 cut(s) 351
BseCI ATCGAT 1 cut(s) 355
BseGI GGATG 2 cut(s) 201, 253
BseJI GATNNNNATC 1 cut(s) 351
BseNI ACTGG 2 cut(s) 110, 202
BseRI GAGGAG 1 cut(s) 72
BshFI GGCC 1 cut(s) 151
BshVI ATCGAT 1 cut(s) 355
BsnI GGCC 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 5 cut(s) 116, 127, 160, 265, 352
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 151
BspDI ATCGAT 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 3 cut(s) 111, 124, 273
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 2 cut(s) 110, 202
BssMI GATC 5 cut(s) 116, 127, 160, 265, 352
BssSI CACGAG 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 51
Bst4CI ACNGT 2 cut(s) 212, 319
Bst6I CTCTTC 2 cut(s) 166, 288
BstAPI GCANNNNNTGC 1 cut(s) 47
BstAUI TGTACA 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 221
BstF5I GGATG 2 cut(s) 201, 253
BstKTI GATC 5 cut(s) 119, 130, 163, 268, 355
BstMBI GATC 5 cut(s) 116, 127, 160, 265, 352
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
Bsu15I ATCGAT 1 cut(s) 355
BsuRI GGCC 1 cut(s) 151
BsuTUI ATCGAT 1 cut(s) 355
BtsCI GGATG 2 cut(s) 201, 253
BtsIMutI CAGTG 2 cut(s) 217, 284
ClaI ATCGAT 1 cut(s) 355
Csp6I GTAC 3 cut(s) 103, 178, 199
CviAII CATG 2 cut(s) 22, 47
CviJI RGCY 1 cut(s) 151
CviKI_1 RGCY 1 cut(s) 151
CviQI GTAC 3 cut(s) 103, 178, 199
DpnI GATC 5 cut(s) 118, 129, 162, 267, 354
DpnII GATC 5 cut(s) 116, 127, 160, 265, 352
Eam1104I CTCTTC 2 cut(s) 166, 288
EarI CTCTTC 2 cut(s) 166, 288
FaeI CATG 2 cut(s) 25, 50
FaiI YATR 6 cut(s) 23, 48, 207, 229, 231, 282
FatI CATG 2 cut(s) 21, 46
FblI GTMKAC 1 cut(s) 90
FokI GGATG 2 cut(s) 208, 260
HaeIII GGCC 1 cut(s) 151
Hin1II CATG 2 cut(s) 25, 50
HinfI GANTC 1 cut(s) 54
Hpy166II GTNNAC 4 cut(s) 91, 105, 178, 238
Hpy188I TCNGA 1 cut(s) 270
Hpy188III TCNNGA 2 cut(s) 263, 311
Hpy8I GTNNAC 4 cut(s) 91, 105, 178, 238
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 2 cut(s) 212, 319
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 2 cut(s) 41, 50
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 2 cut(s) 25, 50
Kzo9I GATC 5 cut(s) 116, 127, 160, 265, 352
LpnPI CCDG 8 cut(s) 81, 123, 141, 148, 149, 215, 248, 324
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 2 cut(s) 140, 322
MalI GATC 5 cut(s) 118, 129, 162, 267, 354
MboI GATC 5 cut(s) 116, 127, 160, 265, 352
MboII GAAGA 3 cut(s) 122, 183, 305
MflI RGATCY 1 cut(s) 116
MluCI AATT 1 cut(s) 327
MlyI GAGTC 1 cut(s) 63
MnlI CCTC 3 cut(s) 90, 93, 161
MseI TTAA 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 5 cut(s) 116, 127, 160, 265, 352
NlaIII CATG 2 cut(s) 25, 50
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 322
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Ppu21I YACGTR 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 118
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 3 cut(s) 104, 179, 200
RsaNI GTAC 3 cut(s) 103, 178, 199
SaqAI TTAA 1 cut(s) 330
Sau3AI GATC 5 cut(s) 116, 127, 160, 265, 352
SchI GAGTC 1 cut(s) 63
SetI ASST 3 cut(s) 82, 223, 337
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 1 cut(s) 327
SsiI CCGC 1 cut(s) 193
TaaI ACNGT 2 cut(s) 212, 319
TaiI ACGT 1 cut(s) 223
TaqI TCGA 2 cut(s) 339, 355
TasI AATT 1 cut(s) 327
TatI WGTACW 2 cut(s) 102, 177
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 2 cut(s) 217, 291
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 24, 264
TspRI CASTG 2 cut(s) 217, 291
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.