Rh6CG350600

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000216
Physical Location & Seq
Reverse (-)
54036041 .. 54051369
15329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG350600.1

Sequence Viewer

Length: 579 bp
ATGACTGCTGGTGGCTATCTTATTGGGCTGGAGCTTTTCAATAAGTTGAACATTAATAGCACTAAATGTCATGGTCGTTTTATTTCCAACCCTCATCCTGTTGATGAAAACTTATTGAATGAAGAGATGGTATGTGTTTGCCAGGGGTGTGTGAGGCTATGCCGGTTATGTAGGGGACTTGGCAGATGCAGTCTCTATGTTTGGGAATTGAAAGGAGATGATGATCATGAGGGGGATGGAGGTGGGAGCGAATGGTGTTTGAAAAAGTTGGTTGACCTGCGTCCAATTATTTCGAGTCTCTGGGGGAGCTATGAGCTTCTGGCTTTCGACCCAAATGATGAAGATATATTGTATCTATGGCGTATTAACTGGGAGAATATACGTAAATTGACGAACAATGGCTGCCGCGATGTGAAACTTGTTGACCACCTCGAATATGGCTGGAAAAGCTTTTTGAGCGACATTGTGGTCATGGAGGTTGGTGACTTTGAGGATGCAGTAGTAGATACCTTTATCAATTCATGTCTTCATGGCCATTGCATTCATATTTCAGGTAAAAAGACTAAGGTCGATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

192

Amino Acids

21.85

Weight (kDa)

5.31

Isoelectric Point (pI)

22.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 467
Acc36I ACCTGC 1 cut(s) 285
AccII CGCG 1 cut(s) 408
AciI CCGC 1 cut(s) 406
AcoI YGGCCR 1 cut(s) 532
AgsI TTSAA 5 cut(s) 40, 49, 118, 211, 262
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 4 cut(s) 34, 309, 316, 450
AluI AGCT 4 cut(s) 34, 309, 316, 450
Alw26I GTCTC 2 cut(s) 197, 302
AoxI GGCC 1 cut(s) 532
ApeKI GCWGC 1 cut(s) 402
AseI ATTAAT 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 494
BalI TGGCCA 1 cut(s) 534
BbsI GAAGAC 1 cut(s) 518
BbvI GCAGC 1 cut(s) 389
BccI CCATC 2 cut(s) 121, 230
BciT130I CCWGG 1 cut(s) 143
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 197, 302
BfaI CTAG 1 cut(s) 577
BfuAI ACCTGC 1 cut(s) 285
BisI GCNGC 2 cut(s) 403, 406
BlsI GCNGC 2 cut(s) 404, 407
Bme1390I CCNGG 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 143
BmrI ACTGGG 1 cut(s) 379
BmsI GCATC 2 cut(s) 176, 484
BmuI ACTGGG 1 cut(s) 379
BoxI GACNNNNGTC 2 cut(s) 279, 566
BpiI GAAGAC 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 142
Bse118I RCCGGY 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 535
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 3 cut(s) 94, 241, 499
BseJI GATNNNNATC 1 cut(s) 222
BseMI GCAATG 1 cut(s) 535
BseNI ACTGG 1 cut(s) 374
BseXI GCAGC 1 cut(s) 389
Bsh1236I CGCG 1 cut(s) 408
BshFI GGCC 1 cut(s) 534
BsiSI CCGG 1 cut(s) 163
BslFI GGGAC 1 cut(s) 189
BsmAI GTCTC 2 cut(s) 197, 302
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 1 cut(s) 534
Bsp143I GATC 2 cut(s) 223, 571
BspACI CCGC 1 cut(s) 406
BspANI GGCC 1 cut(s) 534
BspFNI CGCG 1 cut(s) 408
BspHI TCATGA 1 cut(s) 226
BspMI ACCTGC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 535
BsrFI RCCGGY 1 cut(s) 162
BsrI ACTGG 1 cut(s) 374
BssAI RCCGGY 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 223, 571
Bst2UI CCWGG 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 383
BstDEI CTNAG 1 cut(s) 564
BstF5I GGATG 3 cut(s) 94, 241, 499
BstFNI CGCG 1 cut(s) 408
BstKTI GATC 2 cut(s) 226, 574
BstMAI GTCTC 2 cut(s) 197, 302
BstMBI GATC 2 cut(s) 223, 571
BstMWI GCNNNNNNNGC 2 cut(s) 447, 456
BstNI CCWGG 1 cut(s) 143
BstPAI GACNNNNGTC 2 cut(s) 279, 566
BstSCI CCNGG 1 cut(s) 141
BstSNI TACGTA 1 cut(s) 383
BstUI CGCG 1 cut(s) 408
BstV1I GCAGC 1 cut(s) 389
BstV2I GAAGAC 1 cut(s) 518
BsuRI GGCC 1 cut(s) 534
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 3 cut(s) 94, 241, 499
BveI ACCTGC 1 cut(s) 285
CciI TCATGA 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 162
CseI GACGC 1 cut(s) 269
CviAII CATG 5 cut(s) 71, 227, 472, 522, 530
DdeI CTNAG 1 cut(s) 564
DpnI GATC 2 cut(s) 225, 573
DpnII GATC 2 cut(s) 223, 571
DrdI GACNNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 1 cut(s) 532
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco105I TACGTA 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 141
FaeI CATG 5 cut(s) 74, 230, 475, 525, 533
FaqI GGGAC 1 cut(s) 189
FatI CATG 5 cut(s) 70, 226, 471, 521, 529
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 403, 406
FokI GGATG 3 cut(s) 81, 248, 506
Fsp4HI GCNGC 2 cut(s) 403, 406
FspBI CTAG 1 cut(s) 577
GluI GCNGC 2 cut(s) 403, 406
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 534
HapII CCGG 1 cut(s) 163
HgaI GACGC 1 cut(s) 269
Hin1II CATG 5 cut(s) 74, 230, 475, 525, 533
HincII GTYRAC 2 cut(s) 274, 424
HindII GTYRAC 2 cut(s) 274, 424
HindIII AAGCTT 1 cut(s) 448
HinfI GANTC 1 cut(s) 295
HpaII CCGG 1 cut(s) 163
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 2 cut(s) 274, 424
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 2 cut(s) 274, 424
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 3 cut(s) 189, 497, 540
HpyF10VI GCNNNNNNNGC 2 cut(s) 447, 456
HpyF3I CTNAG 1 cut(s) 564
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 5 cut(s) 74, 230, 475, 525, 533
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 223, 571
LmnI GCTCC 3 cut(s) 31, 246, 306
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 2 cut(s) 176, 484
MaeI CTAG 1 cut(s) 577
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 482
MalI GATC 2 cut(s) 225, 573
MboI GATC 2 cut(s) 223, 571
MboII GAAGA 3 cut(s) 134, 353, 518
MlsI TGGCCA 1 cut(s) 534
MluCI AATT 4 cut(s) 206, 285, 386, 517
MluNI TGGCCA 1 cut(s) 534
MlyI GAGTC 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 7 cut(s) 102, 147, 223, 233, 440, 469, 484
Mox20I TGGCCA 1 cut(s) 534
MscI TGGCCA 1 cut(s) 534
MseI TTAA 2 cut(s) 54, 366
Msp20I TGGCCA 1 cut(s) 534
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 540
MvaI CCWGG 1 cut(s) 143
MvnI CGCG 1 cut(s) 408
MwoI GCNNNNNNNGC 2 cut(s) 447, 456
NdeII GATC 2 cut(s) 223, 571
NlaIII CATG 5 cut(s) 74, 230, 475, 525, 533
NmuCI GTSAC 1 cut(s) 482
PagI TCATGA 1 cut(s) 226
PctI GAATGC 1 cut(s) 540
PkrI GCNGC 2 cut(s) 404, 407
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
Ppu21I YACGTR 1 cut(s) 383
PshAI GACNNNNGTC 2 cut(s) 279, 566
PshBI ATTAAT 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 54, 366
SatI GCNGC 2 cut(s) 403, 406
Sau3AI GATC 2 cut(s) 223, 571
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 143
SfaNI GCATC 2 cut(s) 176, 484
SnaBI TACGTA 1 cut(s) 383
Sse9I AATT 4 cut(s) 206, 285, 386, 517
SsiI CCGC 1 cut(s) 406
SspMI CTAG 1 cut(s) 577
StyD4I CCNGG 1 cut(s) 141
TaiI ACGT 1 cut(s) 385
TaqI TCGA 4 cut(s) 293, 327, 432, 570
TasI AATT 4 cut(s) 206, 285, 386, 517
TauI GCSGC 1 cut(s) 408
Tru1I TTAA 2 cut(s) 54, 366
Tru9I TTAA 2 cut(s) 54, 366
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 1 cut(s) 402
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 6 cut(s) 120, 135, 354, 510, 518, 533
VspI ATTAAT 1 cut(s) 54
XcmI CCANNNNNNNNNTGG 1 cut(s) 434
XspI CTAG 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.