FvH4_6g03181

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000216
Physical Location & Seq
Reverse (-)
1774548 .. 1775597
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03181.t1

Sequence Viewer

Length: 1050 bp
ATGCTTCTGTTTGTCCATACCGCTGCACATGAAATAGAGTTATTCACATTTCCACGGGAGCAGATCAGGGTGTCGAAAACACACAAATCCCATCAGACATACAAGGTTTGGGCAGGGACTTGCAATGACCTAGTTTTGCATTGCGCAACTCCGACGTTTCAGAGGTACTGCTATTACATCAGCAATTCATACACCAAGCATTGTGTTACTCTTCCTCCCGCCCCTCAATGCCACCAAGCCCATGTACTCGTGGGGCTCATATGCGATTCCTACCATAGGTGCAAGGTTGTGCGAATTCTCGAATGTGAGAAAGAATCTGCATTATTCAAGGTGGAGATCTTCTCTTCCGAAACCTATGAATGGACACAAGCAGTAGTTCCATTCCCGCAAGACCTTACATATGATGATTTTAGAAGCAGTGTCGACAATGTAGCCATTGCTTGCAATGGAACATTGTACTGGTTAGTCTCCAATGGCCTTGTTATTGCTTTGGACCCTTCCGAGTGTGACAACATATGCAGTTTTATATCCAAGCCTGATGTAGCAGCAGGCTTGTCTGCTTCTTCGTCATGCGAGCAGTGCCTCACTGTTTCCGGGGGGCGTCTTCGTCTATGCCAGTTCTATAATGAACTTCCATGTCCTATTTTTTATGTGTGGGACTTGAAAGAAAATGTTCATGAGGTGGATGGAGTTGGAGGGAAAAAGGTGCAATGGTGTTTGAAAGAGAAGATTGTCCTGGACAAATTCATGGCGAGGATGTATTGGAAGCCTTTGGCTTTGGACCCAAATGATGAAGATATATTGTATACACTGCTTTATTATCCTCGCAAAAATTCCGAAGATTCACTTCTCTGCAAGCAGAATATTCGAAAGTTTGCATTAGTGTTTCCCATGCTCTGCAAACGTATGCCAGTGCAGAACCGGATAGAAGCTTTTCCAATTGTGATGCCAAGGCAGCGGTTGCCGACACCAGTTCCTAGAGTGGATATTTACCAAGAGAAGATATGCGACTCTTTGCGCTTTGGGGAGAAAAATGGAAGTCCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

350

Amino Acids

40.09

Weight (kDa)

7.07

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 27 - 269 4.8e-17 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 145
AccI GTMKAC 2 cut(s) 423, 806
AciI CCGC 4 cut(s) 21, 219, 386, 958
AcsI RAATTY 3 cut(s) 294, 743, 832
AcyI GRCGYC 1 cut(s) 601
AfaI GTAC 3 cut(s) 167, 246, 458
AfiI CCNNNNNNNGG 2 cut(s) 276, 360
AgsI TTSAA 3 cut(s) 328, 664, 721
AjnI CCWGG 1 cut(s) 735
AluBI AGCT 1 cut(s) 932
AluI AGCT 1 cut(s) 932
Alw26I GTCTC 1 cut(s) 472
AoxI GGCC 1 cut(s) 475
ApeKI GCWGC 3 cut(s) 23, 545, 955
ApoI RAATTY 3 cut(s) 294, 743, 832
Asp700I GAANNNNTTC 2 cut(s) 672, 933
AspLEI GCGC 2 cut(s) 146, 1020
AspS9I GGNCC 2 cut(s) 493, 781
AsuC2I CCSGG 1 cut(s) 595
AsuII TTCGAA 1 cut(s) 868
AvaII GGWCC 2 cut(s) 493, 781
BanII GRGCYC 1 cut(s) 258
BauI CACGAG 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 596
BbvI GCAGC 3 cut(s) 10, 557, 967
BccI CCATC 2 cut(s) 99, 680
BcgI CGANNNNNNTGC 2 cut(s) 848, 882
BciT130I CCWGG 1 cut(s) 737
BcnI CCSGG 1 cut(s) 595
BcoDI GTCTC 1 cut(s) 472
BfaI CTAG 2 cut(s) 131, 978
BglII AGATCT 1 cut(s) 336
BisI GCNGC 3 cut(s) 24, 546, 956
BlsI GCNGC 3 cut(s) 25, 547, 957
Bme1390I CCNGG 2 cut(s) 595, 737
Bme18I GGWCC 2 cut(s) 493, 781
BmgT120I GGNCC 2 cut(s) 493, 781
BmiI GGNNCC 2 cut(s) 495, 783
BmrFI CCNGG 2 cut(s) 595, 737
BmsI GCATC 1 cut(s) 936
BpiI GAAGAC 1 cut(s) 596
BplI GAGNNNNNCTC 2 cut(s) 326, 358
Bpu14I TTCGAA 1 cut(s) 868
BpuMI CCSGG 1 cut(s) 595
BsaHI GRCGYC 1 cut(s) 601
BsaJI CCNNGG 3 cut(s) 53, 594, 950
BsaWI WCCGGW 1 cut(s) 921
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 360
Bse1I ACTGG 4 cut(s) 464, 616, 911, 971
Bse3DI GCAATG 5 cut(s) 130, 139, 435, 451, 716
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 3 cut(s) 53, 594, 950
BseGI GGATG 2 cut(s) 691, 762
BseLI CCNNNNNNNGG 2 cut(s) 276, 360
BseMI GCAATG 5 cut(s) 130, 139, 435, 451, 716
BseNI ACTGG 4 cut(s) 464, 616, 911, 971
BseXI GCAGC 3 cut(s) 10, 557, 967
BsgI GTGCAG 2 cut(s) 9, 935
BshFI GGCC 1 cut(s) 477
BsiSI CCGG 2 cut(s) 594, 922
BslFI GGGAC 3 cut(s) 130, 671, 1026
BslI CCNNNNNNNGG 2 cut(s) 276, 360
BsmAI GTCTC 1 cut(s) 472
BsmFI GGGAC 3 cut(s) 130, 671, 1026
BsnI GGCC 1 cut(s) 477
Bsp119I TTCGAA 1 cut(s) 868
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 2 cut(s) 63, 336
BspACI CCGC 4 cut(s) 21, 219, 386, 958
BspANI GGCC 1 cut(s) 477
BspHI TCATGA 1 cut(s) 676
BspLI GGNNCC 2 cut(s) 495, 783
BspT104I TTCGAA 1 cut(s) 868
BsrDI GCAATG 5 cut(s) 130, 139, 435, 451, 716
BsrI ACTGG 4 cut(s) 464, 616, 911, 971
BssECI CCNNGG 3 cut(s) 53, 594, 950
BssMI GATC 2 cut(s) 63, 336
BssNAI GTATAC 1 cut(s) 807
BssNI GRCGYC 1 cut(s) 601
BssSI CACGAG 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 950
Bst1107I GTATAC 1 cut(s) 807
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 1 cut(s) 589
Bst6I CTCTTC 2 cut(s) 216, 349
BstACI GRCGYC 1 cut(s) 601
BstAPI GCANNNNNTGC 1 cut(s) 961
BstBI TTCGAA 1 cut(s) 868
BstC8I GCNNGC 4 cut(s) 442, 550, 575, 857
BstDSI CCRYGG 1 cut(s) 53
BstENI CCTNNNNNAGG 1 cut(s) 274
BstF5I GGATG 2 cut(s) 691, 762
BstHHI GCGC 2 cut(s) 146, 1020
BstKTI GATC 2 cut(s) 66, 339
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 2 cut(s) 63, 336
BstMWI GCNNNNNNNGC 3 cut(s) 579, 955, 961
BstNI CCWGG 1 cut(s) 737
BstSCI CCNGG 2 cut(s) 593, 735
BstV1I GCAGC 3 cut(s) 10, 557, 967
BstV2I GAAGAC 1 cut(s) 596
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BstZ17I GTATAC 1 cut(s) 807
BsuRI GGCC 1 cut(s) 477
BtgI CCRYGG 1 cut(s) 53
BtsCI GGATG 2 cut(s) 691, 762
BtsI GCAGTG 3 cut(s) 424, 584, 809
BtsIMutI CAGTG 5 cut(s) 424, 584, 585, 809, 918
Cac8I GCNNGC 4 cut(s) 442, 550, 575, 857
CciI TCATGA 1 cut(s) 676
CfoI GCGC 2 cut(s) 146, 1020
Cfr13I GGNCC 2 cut(s) 493, 781
CseI GACGC 1 cut(s) 590
Csp6I GTAC 3 cut(s) 166, 245, 457
CviAII CATG 7 cut(s) 29, 242, 570, 636, 677, 748, 892
CviJI RGCY 9 cut(s) 239, 256, 434, 477, 535, 552, 769, 776, 932
CviKI_1 RGCY 9 cut(s) 239, 256, 434, 477, 535, 552, 769, 776, 932
CviQI GTAC 3 cut(s) 166, 245, 457
DpnI GATC 2 cut(s) 65, 338
DpnII GATC 2 cut(s) 63, 336
Eam1104I CTCTTC 2 cut(s) 216, 349
EarI CTCTTC 2 cut(s) 216, 349
Eco130I CCWWGG 1 cut(s) 950
Eco24I GRGCYC 1 cut(s) 258
Eco47I GGWCC 2 cut(s) 493, 781
EcoNI CCTNNNNNAGG 1 cut(s) 274
EcoRI GAATTC 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 1 cut(s) 950
EcoT38I GRGCYC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 950
FaeI CATG 7 cut(s) 32, 245, 573, 639, 680, 751, 895
FalI AAGNNNNNCTT 2 cut(s) 831, 863
FaqI GGGAC 3 cut(s) 130, 671, 1026
FatI CATG 7 cut(s) 28, 241, 569, 635, 676, 747, 891
FauI CCCGC 2 cut(s) 226, 393
FauNDI CATATG 3 cut(s) 260, 400, 515
FblI GTMKAC 2 cut(s) 423, 806
Fnu4HI GCNGC 3 cut(s) 24, 546, 956
FokI GGATG 2 cut(s) 698, 769
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 24, 546, 956
FspBI CTAG 2 cut(s) 131, 978
FspI TGCGCA 1 cut(s) 145
GlaI GCGC 2 cut(s) 145, 1019
GluI GCNGC 3 cut(s) 24, 546, 956
HaeIII GGCC 1 cut(s) 477
HapII CCGG 2 cut(s) 594, 922
HgaI GACGC 1 cut(s) 590
HhaI GCGC 2 cut(s) 146, 1020
Hin1I GRCGYC 1 cut(s) 601
Hin1II CATG 7 cut(s) 32, 245, 573, 639, 680, 751, 895
Hin6I GCGC 2 cut(s) 144, 1018
HinP1I GCGC 2 cut(s) 144, 1018
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 930
HinfI GANTC 4 cut(s) 266, 314, 842, 1010
HpaII CCGG 2 cut(s) 594, 922
Hpy166II GTNNAC 2 cut(s) 424, 807
Hpy188I TCNGA 6 cut(s) 96, 153, 162, 349, 502, 838
Hpy188III TCNNGA 2 cut(s) 299, 677
Hpy8I GTNNAC 2 cut(s) 424, 807
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 507
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4IV ACGT 2 cut(s) 155, 904
HpyF10VI GCNNNNNNNGC 3 cut(s) 579, 955, 961
HpySE526I ACGT 2 cut(s) 155, 904
Hsp92I GRCGYC 1 cut(s) 601
Hsp92II CATG 7 cut(s) 32, 245, 573, 639, 680, 751, 895
HspAI GCGC 2 cut(s) 144, 1018
Kzo9I GATC 2 cut(s) 63, 336
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 3 cut(s) 10, 557, 967
LweI GCATC 1 cut(s) 936
MaeI CTAG 2 cut(s) 131, 978
MaeII ACGT 2 cut(s) 155, 904
MaeIII GTNAC 2 cut(s) 205, 506
MalI GATC 2 cut(s) 65, 338
MboI GATC 2 cut(s) 63, 336
MboII GAAGA 9 cut(s) 203, 331, 336, 555, 596, 739, 806, 851, 1012
MfeI CAATTG 1 cut(s) 939
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 5 cut(s) 184, 294, 743, 832, 939
MlyI GAGTC 1 cut(s) 1004
MmeI TCCRAC 2 cut(s) 176, 673
MnlI CCTC 8 cut(s) 156, 225, 234, 593, 673, 689, 747, 834
MroXI GAANNNNTTC 2 cut(s) 672, 933
MspA1I CMGCKG 2 cut(s) 23, 958
MspI CCGG 2 cut(s) 594, 922
MspR9I CCNGG 2 cut(s) 595, 737
MunI CAATTG 1 cut(s) 939
MvaI CCWGG 1 cut(s) 737
MwoI GCNNNNNNNGC 3 cut(s) 579, 955, 961
NciI CCSGG 1 cut(s) 595
NdeI CATATG 3 cut(s) 260, 400, 515
NdeII GATC 2 cut(s) 63, 336
NlaIII CATG 7 cut(s) 32, 245, 573, 639, 680, 751, 895
NlaIV GGNNCC 2 cut(s) 495, 783
NmuCI GTSAC 1 cut(s) 506
NsbI TGCGCA 1 cut(s) 145
NspV TTCGAA 1 cut(s) 868
PagI TCATGA 1 cut(s) 676
PdmI GAANNNNTTC 2 cut(s) 672, 933
PfeI GAWTC 3 cut(s) 266, 314, 842
PfoI TCCNGGA 1 cut(s) 735
PkrI GCNGC 3 cut(s) 25, 547, 957
PleI GAGTC 1 cut(s) 1004
PpsI GAGTC 1 cut(s) 1004
Psp6I CCWGG 1 cut(s) 735
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 2 cut(s) 495, 783
PspPI GGNCC 2 cut(s) 493, 781
PsuI RGATCY 1 cut(s) 336
RsaI GTAC 3 cut(s) 167, 246, 458
RsaNI GTAC 3 cut(s) 166, 245, 457
SalI GTCGAC 1 cut(s) 422
SatI GCNGC 3 cut(s) 24, 546, 956
Sau3AI GATC 2 cut(s) 63, 336
Sau96I GGNCC 2 cut(s) 493, 781
SchI GAGTC 1 cut(s) 1004
ScrFI CCNGG 2 cut(s) 595, 737
SduI GDGCHC 1 cut(s) 258
SfaNI GCATC 1 cut(s) 936
SfuI TTCGAA 1 cut(s) 868
SinI GGWCC 2 cut(s) 493, 781
Sse9I AATT 5 cut(s) 184, 294, 743, 832, 939
SsiI CCGC 4 cut(s) 21, 219, 386, 958
SspI AATATT 1 cut(s) 865
SspMI CTAG 2 cut(s) 131, 978
StyD4I CCNGG 2 cut(s) 593, 735
StyI CCWWGG 1 cut(s) 950
TaaI ACNGT 1 cut(s) 589
TaiI ACGT 2 cut(s) 158, 907
TaqI TCGA 4 cut(s) 74, 300, 423, 868
TasI AATT 5 cut(s) 184, 294, 743, 832, 939
TatI WGTACW 2 cut(s) 244, 456
TfiI GAWTC 3 cut(s) 266, 314, 842
TscAI CASTG 5 cut(s) 424, 584, 592, 816, 918
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 3 cut(s) 23, 545, 955
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 7 cut(s) 45, 177, 372, 642, 665, 736, 807
TspRI CASTG 5 cut(s) 424, 584, 592, 816, 918
VpaK11BI GGWCC 2 cut(s) 493, 781
XagI CCTNNNNNAGG 1 cut(s) 274
XapI RAATTY 3 cut(s) 294, 743, 832
XmiI GTMKAC 2 cut(s) 423, 806
XmnI GAANNNNTTC 2 cut(s) 672, 933
XspI CTAG 2 cut(s) 131, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.