MD15G1017800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000216
Physical Location & Seq
Reverse (-)
1024483 .. 1025560
1078 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1017800.v1.1.491

Sequence Viewer

Length: 684 bp
ATGTTGCAGCCGGAGCCCCATCTTCCGGTCACACCCATCATCGCCGACATCCTCTCTCTCGACCCATTTTCTTCACAGCGGCGAAGACACCAAGCAGTTGGTTGTCCGATTCCTGCGGCCATGGGATCCCAGCCCCTGCCTTCTGCTTCTGATGAGCAGTTGGCATCAAAACTCCTCCTCATCAATGATCTGCCTGATGGCGTATTGGTTGAAATCCTTTGCCGACTTCCTTACAAATACGCTCGTCGAAATAAGCGTGTGTGCAAGCGGTGGTTGGCTCTCATCTCTAATTCTTATTTTGCTGCCCGCATTTTATGCATGCAAATTGATAGGAAACAACCCATTACGCTGCTGCGTACTCTCTTGTTCTCGAACACTACCGCCAAACCTTCCCCGCCGGATTCACCTTTCGTCATATCATCTTCGATGCTCTGCTTTGGAAAAACAAGCATTGCAGCTCTTCACCTCATCCCGCGGTTTAAAGGCACAAAAGAAAAGCTAGTGGTGGCCATGTATAATGACTTAGTTTTGTGCTGCCTGACCAAGGATGATCCACATAAATACTACATATGCAATCCAAAACGCCCGGCAATGTGTTGCCCTTCCTCCCGCCCCCCCACACCACAAGATCGCACAAGTGGGATTCATCTGCGATCCCTACTATGCCAGCCAAGAACAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

228

Amino Acids

25.45

Weight (kDa)

9.66

Isoelectric Point (pI)

69.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 61 - 100 2e-06 F-box domain
F-box-like PF12937 61 - 104 8.9e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 475
AciI CCGC 9 cut(s) 79, 116, 268, 307, 381, 395, 473, 475, 610
AclWI GGATC 4 cut(s) 120, 133, 545, 648
AcoI YGGCCR 2 cut(s) 117, 507
AfaI GTAC 1 cut(s) 358
AfiI CCNNNNNNNGG 2 cut(s) 25, 544
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 2 cut(s) 458, 499
AluI AGCT 2 cut(s) 458, 499
AlwI GGATC 4 cut(s) 120, 133, 545, 648
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 2 cut(s) 117, 507
ApeKI GCWGC 6 cut(s) 7, 302, 349, 352, 455, 534
AsuC2I CCSGG 1 cut(s) 587
AsuHPI GGTGA 2 cut(s) 396, 455
BalI TGGCCA 1 cut(s) 509
BamHI GGATCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 91
BbvI GCAGC 6 cut(s) 19, 289, 336, 339, 467, 521
BccI CCATC 3 cut(s) 27, 44, 191
BcnI CCSGG 1 cut(s) 587
BfaI CTAG 1 cut(s) 500
BisI GCNGC 8 cut(s) 8, 80, 117, 303, 350, 353, 456, 535
BlsI GCNGC 8 cut(s) 9, 81, 118, 304, 351, 354, 457, 536
Bme1390I CCNGG 1 cut(s) 587
BmiI GGNNCC 2 cut(s) 15, 127
BmrFI CCNGG 1 cut(s) 587
BmsI GCATC 2 cut(s) 173, 417
BpiI GAAGAC 1 cut(s) 91
BpuMI CCSGG 1 cut(s) 587
BsaJI CCNNGG 3 cut(s) 120, 473, 543
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 544
Bse3DI GCAATG 2 cut(s) 450, 597
BseDI CCNNGG 3 cut(s) 120, 473, 543
BseGI GGATG 3 cut(s) 48, 468, 553
BseLI CCNNNNNNNGG 2 cut(s) 25, 544
BseMI GCAATG 2 cut(s) 450, 597
BseRI GAGGAG 2 cut(s) 164, 167
BseXI GCAGC 6 cut(s) 19, 289, 336, 339, 467, 521
BseYI CCCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 475
BshFI GGCC 2 cut(s) 119, 509
BsiSI CCGG 4 cut(s) 11, 26, 398, 587
BslI CCNNNNNNNGG 2 cut(s) 25, 544
BsnI GGCC 2 cut(s) 119, 509
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 5 cut(s) 125, 187, 550, 628, 653
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 9 cut(s) 79, 116, 268, 307, 381, 395, 473, 475, 610
BspANI GGCC 2 cut(s) 119, 509
BspFNI CGCG 1 cut(s) 475
BspLI GGNNCC 2 cut(s) 15, 127
BspPI GGATC 4 cut(s) 120, 133, 545, 648
BspQI GCTCTTC 1 cut(s) 465
BsrDI GCAATG 2 cut(s) 450, 597
BssECI CCNNGG 3 cut(s) 120, 473, 543
BssMI GATC 5 cut(s) 125, 187, 550, 628, 653
BssT1I CCWWGG 2 cut(s) 120, 543
Bst6I CTCTTC 1 cut(s) 465
BstAPI GCANNNNNTGC 1 cut(s) 315
BstC8I GCNNGC 4 cut(s) 266, 307, 320, 668
BstDEI CTNAG 1 cut(s) 523
BstDSI CCRYGG 2 cut(s) 120, 473
BstENI CCTNNNNNAGG 1 cut(s) 542
BstF5I GGATG 3 cut(s) 48, 468, 553
BstFNI CGCG 1 cut(s) 475
BstKTI GATC 5 cut(s) 128, 190, 553, 631, 656
BstMBI GATC 5 cut(s) 125, 187, 550, 628, 653
BstMWI GCNNNNNNNGC 2 cut(s) 13, 315
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 585
BstUI CGCG 1 cut(s) 475
BstV1I GCAGC 6 cut(s) 19, 289, 336, 339, 467, 521
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 125
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 1 cut(s) 125
BsuRI GGCC 2 cut(s) 119, 509
BtgI CCRYGG 2 cut(s) 120, 473
BtgZI GCGATG 1 cut(s) 25
BtsCI GGATG 3 cut(s) 48, 468, 553
Cac8I GCNNGC 4 cut(s) 266, 307, 320, 668
CaiI CAGNNNCTG 1 cut(s) 136
Cfr42I CCGCGG 1 cut(s) 476
Csp6I GTAC 1 cut(s) 357
CviAII CATG 3 cut(s) 121, 319, 511
CviJI RGCY 9 cut(s) 10, 16, 119, 133, 278, 458, 499, 509, 670
CviKI_1 RGCY 9 cut(s) 10, 16, 119, 133, 278, 458, 499, 509, 670
CviQI GTAC 1 cut(s) 357
DdeI CTNAG 1 cut(s) 523
DpnI GATC 5 cut(s) 127, 189, 552, 630, 655
DpnII GATC 5 cut(s) 125, 187, 550, 628, 653
DraI TTTAAA 1 cut(s) 481
EaeI YGGCCR 2 cut(s) 117, 507
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
Eco130I CCWWGG 2 cut(s) 120, 543
Eco24I GRGCYC 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 542
EcoT14I CCWWGG 2 cut(s) 120, 543
EcoT22I ATGCAT 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 2 cut(s) 120, 543
FaeI CATG 3 cut(s) 124, 322, 514
FatI CATG 3 cut(s) 120, 318, 510
FauI CCCGC 4 cut(s) 314, 402, 480, 617
FauNDI CATATG 1 cut(s) 569
Fnu4HI GCNGC 8 cut(s) 8, 80, 117, 303, 350, 353, 456, 535
FokI GGATG 3 cut(s) 35, 455, 560
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 8 cut(s) 8, 80, 117, 303, 350, 353, 456, 535
FspBI CTAG 1 cut(s) 500
GluI GCNGC 8 cut(s) 8, 80, 117, 303, 350, 353, 456, 535
GsaI CCCAGC 1 cut(s) 133
HaeIII GGCC 2 cut(s) 119, 509
HapII CCGG 4 cut(s) 11, 26, 398, 587
Hin1II CATG 3 cut(s) 124, 322, 514
HinfI GANTC 3 cut(s) 109, 401, 643
HpaII CCGG 4 cut(s) 11, 26, 398, 587
HphI GGTGA 2 cut(s) 396, 455
Hpy188I TCNGA 2 cut(s) 108, 151
Hpy188III TCNNGA 2 cut(s) 59, 370
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 3 cut(s) 150, 399, 612
HpyCH4V TGCA 6 cut(s) 7, 264, 318, 322, 455, 573
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 315
HpyF3I CTNAG 1 cut(s) 523
Hsp92II CATG 3 cut(s) 124, 322, 514
KspI CCGCGG 1 cut(s) 476
Kzo9I GATC 5 cut(s) 125, 187, 550, 628, 653
LguI GCTCTTC 1 cut(s) 465
LmnI GCTCC 1 cut(s) 13
Lsp1109I GCAGC 6 cut(s) 19, 289, 336, 339, 467, 521
LweI GCATC 2 cut(s) 173, 417
MaeI CTAG 1 cut(s) 500
MaeIII GTNAC 1 cut(s) 28
MalI GATC 5 cut(s) 127, 189, 552, 630, 655
MboI GATC 5 cut(s) 125, 187, 550, 628, 653
MboII GAAGA 5 cut(s) 14, 63, 96, 414, 452
MflI RGATCY 1 cut(s) 125
MhlI GDGCHC 1 cut(s) 18
MlsI TGGCCA 1 cut(s) 509
MluCI AATT 2 cut(s) 289, 324
MluNI TGGCCA 1 cut(s) 509
MnlI CCTC 5 cut(s) 62, 185, 188, 476, 616
Mox20I TGGCCA 1 cut(s) 509
Mph1103I ATGCAT 1 cut(s) 320
MscI TGGCCA 1 cut(s) 509
MseI TTAA 1 cut(s) 480
Msp20I TGGCCA 1 cut(s) 509
MspA1I CMGCKG 2 cut(s) 79, 475
MspI CCGG 4 cut(s) 11, 26, 398, 587
MspR9I CCNGG 1 cut(s) 587
MvnI CGCG 1 cut(s) 475
MwoI GCNNNNNNNGC 2 cut(s) 13, 315
NciI CCSGG 1 cut(s) 587
NcoI CCATGG 1 cut(s) 120
NdeI CATATG 1 cut(s) 569
NdeII GATC 5 cut(s) 125, 187, 550, 628, 653
NlaIII CATG 3 cut(s) 124, 322, 514
NlaIV GGNNCC 2 cut(s) 15, 127
NmuCI GTSAC 1 cut(s) 28
NsiI ATGCAT 1 cut(s) 320
NspI RCATGY 1 cut(s) 322
PaeI GCATGC 1 cut(s) 322
PciSI GCTCTTC 1 cut(s) 465
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PfeI GAWTC 3 cut(s) 109, 401, 643
PkrI GCNGC 8 cut(s) 9, 81, 118, 304, 351, 354, 457, 536
PspFI CCCAGC 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 15, 127
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 125
RsaI GTAC 1 cut(s) 358
RsaNI GTAC 1 cut(s) 357
SacII CCGCGG 1 cut(s) 476
SapI GCTCTTC 1 cut(s) 465
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 8 cut(s) 8, 80, 117, 303, 350, 353, 456, 535
Sau3AI GATC 5 cut(s) 125, 187, 550, 628, 653
ScrFI CCNGG 1 cut(s) 587
SduI GDGCHC 1 cut(s) 18
SetI ASST 5 cut(s) 391, 409, 460, 468, 501
SfaNI GCATC 2 cut(s) 173, 417
Sfr303I CCGCGG 1 cut(s) 476
SgrBI CCGCGG 1 cut(s) 476
SphI GCATGC 1 cut(s) 322
Sse9I AATT 2 cut(s) 289, 324
SsiI CCGC 9 cut(s) 79, 116, 268, 307, 381, 395, 473, 475, 610
SspMI CTAG 1 cut(s) 500
StyD4I CCNGG 1 cut(s) 585
StyI CCWWGG 2 cut(s) 120, 543
TaqI TCGA 4 cut(s) 60, 247, 371, 425
TasI AATT 2 cut(s) 289, 324
TauI GCSGC 2 cut(s) 82, 119
TfiI GAWTC 3 cut(s) 109, 401, 643
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 6 cut(s) 7, 302, 349, 352, 455, 534
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 635
XagI CCTNNNNNAGG 1 cut(s) 542
XceI RCATGY 1 cut(s) 322
XspI CTAG 1 cut(s) 500
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.