Rw5G043360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000216
Physical Location & Seq
Forward (+)
76149480 .. 76150488
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G043360.1

Sequence Viewer

Length: 921 bp
ATGCAAACGATTACCAGCAAGAGCATCATCAAAATTACTGATACTAGTATCAATGATCTCCCTGATCACCTGTTGGTTGAAGTCCTATGTCGACTTCCTGACAATAAAATCTGCTTGCAATGCACATCTGTGTGCAGACGTTGGTGCTCTCTCATCTCTGATCCTTATTTTATTGGTCGCTTTCTTTGGCTCCAAAGGGATTTAGGGTCGCCAATAATTCGTACTTTGATAAACCACAATGCAGAGGAGTTCCCTACTACAGATGTGTTTCAAAGACTCAGGAGTTTCCTCCGTCTGAAAGAAGATCCATGTGTACTAGCGACATCAAATGACTTGGTTTTGTGCTGTGCAAGCAAGGATGATCAACATGATTACTACATTTGCAATCCATGCACCATGCAACTGGTTACTCTTCCTCCAATCCCTGCATGCCACGAGTTTGTGCCAGTGGGATTCATATGCGAGCCCTACTATAATTATGAAGAGGAAGTGGGGATCATCGAAAAGAACAAAAGATCAATATTAATGGTGATTATAGTCTTCTCTTCTGAGATCGGGGAATGGAGAGAGTCAGTTGTATCATCTCCTACAGACCTTTCCTCGTATATTTTTGATCGGAATATTAGCTTTGGTAACAATGGAATGATATATTGGGGGACTCTTGATGGTGATCTCATTGGCAGTTCTAGTGATCAGTATCAGTGTCGTTTGATTGAATTTGACAGTATTGTGAAGGAGAATTTCACATTGGATTTCTTAGGTGTGTACCAAGGATTTCTGCGCATGTGCGATTACAACTTTGACAATTGTTGGTTGCTTGTTTTGGAGTTGTCTGAAGAAGAACATGAGCAGCTGGTTGTCAATGGACTTGGAAAATGTGGTTTGGAATATGGGAAGCGTTATTCACTTCCCCCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

306

Amino Acids

35.18

Weight (kDa)

4.71

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 17 - 56 3.7e-08 F-box-like
F-box PF00646 17 - 57 4.8e-06 F-box domain
b-prop_At3g26010-like PF24750 101 - 223 5.5e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 782
AccI GTMKAC 1 cut(s) 91
AclWI GGATC 3 cut(s) 155, 299, 503
AcsI RAATTY 2 cut(s) 716, 739
AcuI CTGAAG 1 cut(s) 855
AfaI GTAC 3 cut(s) 223, 315, 767
AgsI TTSAA 3 cut(s) 80, 272, 716
AhlI ACTAGT 1 cut(s) 44
AjuI GAANNNNNNNTTGG 4 cut(s) 634, 666, 731, 763
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 2 cut(s) 627, 853
AluI AGCT 2 cut(s) 627, 853
Alw21I GWGCWC 1 cut(s) 149
AlwI GGATC 3 cut(s) 155, 299, 503
ApeKI GCWGC 1 cut(s) 850
ApoI RAATTY 2 cut(s) 716, 739
AseI ATTAAT 1 cut(s) 524
AspLEI GCGC 1 cut(s) 783
AsuHPI GGTGA 3 cut(s) 59, 541, 680
BanII GRGCYC 1 cut(s) 468
BauI CACGAG 1 cut(s) 434
BbsI GAAGAC 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 862
BccI CCATC 1 cut(s) 659
BclI TGATCA 3 cut(s) 64, 361, 691
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 3 cut(s) 45, 317, 687
BfmI CTRYAG 2 cut(s) 258, 588
BisI GCNGC 1 cut(s) 851
BlsI GCNGC 1 cut(s) 852
BmiI GGNNCC 1 cut(s) 191
BmsI GCATC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 532
BsaBI GATNNNNATC 2 cut(s) 669, 696
BsaJI CCNNGG 1 cut(s) 769
BsaXI ACNNNNNCTCC 2 cut(s) 400, 430
Bse1I ACTGG 2 cut(s) 408, 446
Bse3DI GCAATG 1 cut(s) 125
Bse8I GATNNNNATC 2 cut(s) 669, 696
BseDI CCNNGG 1 cut(s) 769
BseGI GGATG 1 cut(s) 364
BseJI GATNNNNATC 2 cut(s) 669, 696
BseMI GCAATG 1 cut(s) 125
BseMII CTCAG 2 cut(s) 292, 540
BseNI ACTGG 2 cut(s) 408, 446
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 862
BsgI GTGCAG 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 149
BslFI GGGAC 1 cut(s) 670
BsmFI GGGAC 1 cut(s) 670
Bsp1286I GDGCHC 2 cut(s) 149, 468
BspCNI CTCAG 2 cut(s) 291, 541
BspLI GGNNCC 1 cut(s) 191
BspPI GGATC 3 cut(s) 155, 299, 503
BsrDI GCAATG 1 cut(s) 125
BsrI ACTGG 2 cut(s) 408, 446
BssECI CCNNGG 1 cut(s) 769
BssSI CACGAG 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 769
Bst2BI CACGAG 1 cut(s) 434
Bst4CI ACNGT 1 cut(s) 725
Bst6I CTCTTC 3 cut(s) 417, 477, 550
BstAPI GCANNNNNTGC 1 cut(s) 390
BstC8I GCNNGC 4 cut(s) 116, 352, 430, 464
BstDEI CTNAG 3 cut(s) 278, 549, 757
BstF5I GGATG 1 cut(s) 364
BstHHI GCGC 1 cut(s) 783
BstMWI GCNNNNNNNGC 3 cut(s) 120, 351, 390
BstNSI RCATGY 2 cut(s) 432, 787
BstSFI CTRYAG 2 cut(s) 258, 588
BstV1I GCAGC 1 cut(s) 862
BstV2I GAAGAC 1 cut(s) 532
BstX2I RGATCY 1 cut(s) 304
BstXI CCANNNNNNTGG 1 cut(s) 403
BstYI RGATCY 1 cut(s) 304
BtsCI GGATG 1 cut(s) 364
BtsIMutI CAGTG 2 cut(s) 453, 707
Cac8I GCNNGC 4 cut(s) 116, 352, 430, 464
CfoI GCGC 1 cut(s) 783
Csp6I GTAC 3 cut(s) 222, 314, 766
CviAII CATG 7 cut(s) 309, 368, 390, 397, 429, 784, 845
CviJI RGCY 4 cut(s) 190, 466, 627, 853
CviKI_1 RGCY 4 cut(s) 190, 466, 627, 853
CviQI GTAC 3 cut(s) 222, 314, 766
DdeI CTNAG 3 cut(s) 278, 549, 757
Eam1104I CTCTTC 3 cut(s) 417, 477, 550
EarI CTCTTC 3 cut(s) 417, 477, 550
Eco130I CCWWGG 1 cut(s) 769
Eco24I GRGCYC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 855
EcoT14I CCWWGG 1 cut(s) 769
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 769
FaeI CATG 7 cut(s) 312, 371, 393, 400, 432, 787, 848
FaqI GGGAC 1 cut(s) 670
FatI CATG 7 cut(s) 308, 367, 389, 396, 428, 783, 844
FauNDI CATATG 1 cut(s) 458
FbaI TGATCA 3 cut(s) 64, 361, 691
FblI GTMKAC 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 851
FokI GGATG 1 cut(s) 371
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 1 cut(s) 851
FspBI CTAG 3 cut(s) 45, 317, 687
FspI TGCGCA 1 cut(s) 782
GlaI GCGC 1 cut(s) 782
GluI GCNGC 1 cut(s) 851
HhaI GCGC 1 cut(s) 783
Hin1II CATG 7 cut(s) 312, 371, 393, 400, 432, 787, 848
Hin6I GCGC 1 cut(s) 781
HinP1I GCGC 1 cut(s) 781
HincII GTYRAC 1 cut(s) 92
HindII GTYRAC 1 cut(s) 92
HinfI GANTC 4 cut(s) 276, 453, 569, 658
HphI GGTGA 3 cut(s) 59, 541, 680
Hpy166II GTNNAC 3 cut(s) 92, 314, 766
Hpy188I TCNGA 5 cut(s) 160, 297, 550, 618, 835
Hpy188III TCNNGA 3 cut(s) 98, 280, 662
Hpy8I GTNNAC 3 cut(s) 92, 314, 766
HpyAV CCTTC 1 cut(s) 727
HpyCH4III ACNGT 1 cut(s) 725
HpyCH4IV ACGT 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 351, 390
HpyF3I CTNAG 3 cut(s) 278, 549, 757
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 7 cut(s) 312, 371, 393, 400, 432, 787, 848
HspAI GCGC 1 cut(s) 781
Ksp22I TGATCA 3 cut(s) 64, 361, 691
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 9 cut(s) 28, 75, 83, 111, 265, 389, 438, 459, 839
Lsp1109I GCAGC 1 cut(s) 862
LweI GCATC 1 cut(s) 33
MaeI CTAG 3 cut(s) 45, 317, 687
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 2 cut(s) 406, 632
MboII GAAGA 7 cut(s) 314, 404, 494, 532, 537, 848, 851
MfeI CAATTG 1 cut(s) 805
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 2 cut(s) 149, 468
MluCI AATT 6 cut(s) 33, 216, 475, 716, 739, 805
MlyI GAGTC 3 cut(s) 270, 578, 652
MnlI CCTC 5 cut(s) 238, 299, 426, 478, 610
MseI TTAA 1 cut(s) 524
MslI CAYNNNNRTG 2 cut(s) 128, 130
MspA1I CMGCKG 1 cut(s) 853
MunI CAATTG 1 cut(s) 805
MwoI GCNNNNNNNGC 3 cut(s) 120, 351, 390
NdeI CATATG 1 cut(s) 458
NlaIII CATG 7 cut(s) 312, 371, 393, 400, 432, 787, 848
NlaIV GGNNCC 1 cut(s) 191
NsbI TGCGCA 1 cut(s) 782
NspI RCATGY 2 cut(s) 432, 787
OliI CACNNNNGTG 1 cut(s) 128
PaeI GCATGC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 453
PkrI GCNGC 1 cut(s) 852
PleI GAGTC 3 cut(s) 270, 577, 652
PpsI GAGTC 3 cut(s) 270, 577, 652
PshBI ATTAAT 1 cut(s) 524
PspN4I GGNNCC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 853
RsaI GTAC 3 cut(s) 223, 315, 767
RsaNI GTAC 3 cut(s) 222, 314, 766
RseI CAYNNNNRTG 2 cut(s) 128, 130
SalI GTCGAC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 1 cut(s) 851
SchI GAGTC 3 cut(s) 270, 578, 652
SduI GDGCHC 2 cut(s) 149, 468
SetI ASST 6 cut(s) 72, 142, 597, 629, 763, 855
SfaNI GCATC 1 cut(s) 33
SfcI CTRYAG 2 cut(s) 258, 588
SmiMI CAYNNNNRTG 2 cut(s) 128, 130
SpeI ACTAGT 1 cut(s) 44
SphI GCATGC 1 cut(s) 432
Sse9I AATT 6 cut(s) 33, 216, 475, 716, 739, 805
SspI AATATT 2 cut(s) 522, 622
SspMI CTAG 3 cut(s) 45, 317, 687
StyI CCWWGG 1 cut(s) 769
TaaI ACNGT 1 cut(s) 725
TaiI ACGT 1 cut(s) 142
TaqI TCGA 2 cut(s) 91, 501
TasI AATT 6 cut(s) 33, 216, 475, 716, 739, 805
TatI WGTACW 1 cut(s) 313
TfiI GAWTC 1 cut(s) 453
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TscAI CASTG 2 cut(s) 453, 707
TseI GCWGC 1 cut(s) 850
TspDTI ATGAA 2 cut(s) 445, 495
TspGWI ACGGA 1 cut(s) 281
TspRI CASTG 2 cut(s) 453, 707
VspI ATTAAT 1 cut(s) 524
XapI RAATTY 2 cut(s) 716, 739
XceI RCATGY 2 cut(s) 432, 787
XmiI GTMKAC 1 cut(s) 91
XspI CTAG 3 cut(s) 45, 317, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.