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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 354, 572 |
| Acc65I | GGTACC | 1 cut(s) | 1270 |
| AccB1I | GGYRCC | 1 cut(s) | 1270 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 138 |
| AccII | CGCG | 1 cut(s) | 892 |
| AciI | CCGC | 2 cut(s) | 611, 1268 |
| AclWI | GGATC | 3 cut(s) | 152, 1012, 1097 |
| AcsI | RAATTY | 6 cut(s) | 248, 310, 623, 861, 905, 992 |
| AcuI | CTGAAG | 1 cut(s) | 1241 |
| AfaI | GTAC | 4 cut(s) | 223, 829, 958, 1272 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 138, 244 |
| AflIII | ACRYGT | 2 cut(s) | 589, 890 |
| AgsI | TTSAA | 6 cut(s) | 34, 77, 325, 587, 628, 1232 |
| AleI | CACNNNNGTG | 1 cut(s) | 464 |
| Alw21I | GWGCWC | 1 cut(s) | 890 |
| Alw26I | GTCTC | 3 cut(s) | 644, 682, 1176 |
| Alw44I | GTGCAC | 1 cut(s) | 886 |
| AlwI | GGATC | 3 cut(s) | 152, 1012, 1097 |
| AoxI | GGCC | 2 cut(s) | 17, 1280 |
| ApaLI | GTGCAC | 1 cut(s) | 886 |
| ApoI | RAATTY | 6 cut(s) | 248, 310, 623, 861, 905, 992 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 208, 240 |
| AseI | ATTAAT | 1 cut(s) | 546 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 432, 791 |
| Asp718I | GGTACC | 1 cut(s) | 1270 |
| AspA2I | CCTAGG | 2 cut(s) | 910, 1295 |
| AsuHPI | GGTGA | 4 cut(s) | 62, 478, 851, 1139 |
| AsuII | TTCGAA | 1 cut(s) | 426 |
| AvrII | CCTAGG | 2 cut(s) | 910, 1295 |
| BaeGI | GKGCMC | 1 cut(s) | 890 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1262, 1295 |
| BanI | GGYRCC | 1 cut(s) | 1270 |
| BbsI | GAAGAC | 1 cut(s) | 307 |
| Bbv12I | GWGCWC | 1 cut(s) | 890 |
| BccI | CCATC | 4 cut(s) | 28, 694, 793, 830 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 78, 112 |
| BciVI | GTATCC | 1 cut(s) | 197 |
| BclI | TGATCA | 1 cut(s) | 850 |
| BcoDI | GTCTC | 3 cut(s) | 644, 682, 1176 |
| BfaI | CTAG | 5 cut(s) | 258, 455, 819, 911, 1296 |
| BfmI | CTRYAG | 2 cut(s) | 932, 946 |
| BfuI | GTATCC | 1 cut(s) | 197 |
| BglII | AGATCT | 1 cut(s) | 636 |
| BisI | GCNGC | 1 cut(s) | 611 |
| BlnI | CCTAGG | 2 cut(s) | 910, 1295 |
| BlpI | GCTNAGC | 1 cut(s) | 201 |
| BlsI | GCNGC | 1 cut(s) | 612 |
| BmcAI | AGTACT | 1 cut(s) | 223 |
| BmiI | GGNNCC | 1 cut(s) | 1272 |
| BmsI | GCATC | 4 cut(s) | 52, 107, 187, 591 |
| BpiI | GAAGAC | 1 cut(s) | 307 |
| Bpu10I | CCTNAGC | 1 cut(s) | 83 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 201 |
| Bpu14I | TTCGAA | 1 cut(s) | 426 |
| BpuEI | CTTGAG | 1 cut(s) | 1139 |
| BsaBI | GATNNNNATC | 2 cut(s) | 711, 849 |
| BsaJI | CCNNGG | 5 cut(s) | 238, 910, 1274, 1295, 1334 |
| BsaWI | WCCGGW | 1 cut(s) | 1208 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 138, 244 |
| Bse118I | RCCGGY | 3 cut(s) | 174, 334, 381 |
| Bse1I | ACTGG | 6 cut(s) | 121, 219, 658, 817, 1053, 1289 |
| Bse3DI | GCAATG | 1 cut(s) | 108 |
| Bse8I | GATNNNNATC | 2 cut(s) | 711, 849 |
| BseDI | CCNNGG | 5 cut(s) | 238, 910, 1274, 1295, 1334 |
| BseGI | GGATG | 3 cut(s) | 267, 537, 1165 |
| BseJI | GATNNNNATC | 2 cut(s) | 711, 849 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 138, 244 |
| BseMI | GCAATG | 1 cut(s) | 108 |
| BseMII | CTCAG | 3 cut(s) | 453, 543, 639 |
| BseNI | ACTGG | 6 cut(s) | 121, 219, 658, 817, 1053, 1289 |
| BseRI | GAGGAG | 2 cut(s) | 441, 1048 |
| BseSI | GKGCMC | 1 cut(s) | 890 |
| BsgI | GTGCAG | 2 cut(s) | 583, 653 |
| Bsh1236I | CGCG | 1 cut(s) | 892 |
| BshFI | GGCC | 2 cut(s) | 19, 1282 |
| BshNI | GGYRCC | 1 cut(s) | 1270 |
| BsiHKAI | GWGCWC | 1 cut(s) | 890 |
| BsiSI | CCGG | 4 cut(s) | 175, 335, 382, 1209 |
| BslFI | GGGAC | 1 cut(s) | 1277 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 138, 244 |
| BsmAI | GTCTC | 3 cut(s) | 644, 682, 1176 |
| BsmFI | GGGAC | 1 cut(s) | 1277 |
| BsnI | GGCC | 2 cut(s) | 19, 1282 |
| Bsp119I | TTCGAA | 1 cut(s) | 426 |
| Bsp1286I | GDGCHC | 1 cut(s) | 890 |
| Bsp143I | GATC | 8 cut(s) | 52, 157, 520, 636, 850, 880, 1004, 1102 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 201 |
| BspACI | CCGC | 2 cut(s) | 611, 1268 |
| BspANI | GGCC | 2 cut(s) | 19, 1282 |
| BspCNI | CTCAG | 3 cut(s) | 454, 544, 640 |
| BspFNI | CGCG | 1 cut(s) | 892 |
| BspHI | TCATGA | 5 cut(s) | 213, 306, 795, 985, 1249 |
| BspLI | GGNNCC | 1 cut(s) | 1272 |
| BspMAI | CTGCAG | 1 cut(s) | 936 |
| BspPI | GGATC | 3 cut(s) | 152, 1012, 1097 |
| BspQI | GCTCTTC | 1 cut(s) | 324 |
| BspT104I | TTCGAA | 1 cut(s) | 426 |
| BspT107I | GGYRCC | 1 cut(s) | 1270 |
| BsrDI | GCAATG | 1 cut(s) | 108 |
| BsrFI | RCCGGY | 3 cut(s) | 174, 334, 381 |
| BsrI | ACTGG | 6 cut(s) | 121, 219, 658, 817, 1053, 1289 |
| BssAI | RCCGGY | 3 cut(s) | 174, 334, 381 |
| BssECI | CCNNGG | 5 cut(s) | 238, 910, 1274, 1295, 1334 |
| BssMI | GATC | 8 cut(s) | 52, 157, 520, 636, 850, 880, 1004, 1102 |
| BssT1I | CCWWGG | 3 cut(s) | 238, 910, 1295 |
| Bst4CI | ACNGT | 6 cut(s) | 764, 832, 1118, 1241, 1264, 1275 |
| Bst6I | CTCTTC | 3 cut(s) | 324, 444, 649 |
| BstBI | TTCGAA | 1 cut(s) | 426 |
| BstC8I | GCNNGC | 2 cut(s) | 379, 890 |
| BstDEI | CTNAG | 6 cut(s) | 83, 201, 462, 552, 648, 1054 |
| BstDSI | CCRYGG | 1 cut(s) | 1274 |
| BstF5I | GGATG | 3 cut(s) | 267, 537, 1165 |
| BstFNI | CGCG | 1 cut(s) | 892 |
| BstKTI | GATC | 8 cut(s) | 55, 160, 523, 639, 853, 883, 1007, 1105 |
| BstMAI | GTCTC | 3 cut(s) | 644, 682, 1176 |
| BstMBI | GATC | 8 cut(s) | 52, 157, 520, 636, 850, 880, 1004, 1102 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 610, 971 |
| BstNSI | RCATGY | 1 cut(s) | 965 |
| BstSFI | CTRYAG | 2 cut(s) | 932, 946 |
| BstSLI | GKGCMC | 1 cut(s) | 890 |
| BstUI | CGCG | 1 cut(s) | 892 |
| BstV2I | GAAGAC | 1 cut(s) | 307 |
| BstX2I | RGATCY | 2 cut(s) | 636, 1004 |
| BstYI | RGATCY | 2 cut(s) | 636, 1004 |
| BsuI | GTATCC | 1 cut(s) | 197 |
| BsuRI | GGCC | 2 cut(s) | 19, 1282 |
| BtgI | CCRYGG | 1 cut(s) | 1274 |
| BtsCI | GGATG | 3 cut(s) | 267, 537, 1165 |
| BtsIMutI | CAGTG | 5 cut(s) | 128, 459, 769, 1046, 1237 |
| Cac8I | GCNNGC | 2 cut(s) | 379, 890 |
| CciI | TCATGA | 5 cut(s) | 213, 306, 795, 985, 1249 |
| Cfr10I | RCCGGY | 3 cut(s) | 174, 334, 381 |
| Csp6I | GTAC | 4 cut(s) | 222, 828, 957, 1271 |
| CviJI | RGCY | 7 cut(s) | 19, 87, 334, 381, 1282, 1300, 1339 |
| CviKI_1 | RGCY | 7 cut(s) | 19, 87, 334, 381, 1282, 1300, 1339 |
| CviQI | GTAC | 4 cut(s) | 222, 828, 957, 1271 |
| DdeI | CTNAG | 6 cut(s) | 83, 201, 462, 552, 648, 1054 |
| DpnI | GATC | 8 cut(s) | 54, 159, 522, 638, 852, 882, 1006, 1104 |
| DpnII | GATC | 8 cut(s) | 52, 157, 520, 636, 850, 880, 1004, 1102 |
| Eam1104I | CTCTTC | 3 cut(s) | 324, 444, 649 |
| EarI | CTCTTC | 3 cut(s) | 324, 444, 649 |
| Eco130I | CCWWGG | 3 cut(s) | 238, 910, 1295 |
| Eco57I | CTGAAG | 1 cut(s) | 1241 |
| EcoRI | GAATTC | 3 cut(s) | 248, 623, 992 |
| EcoT14I | CCWWGG | 3 cut(s) | 238, 910, 1295 |
| EcoT22I | ATGCAT | 1 cut(s) | 606 |
| ErhI | CCWWGG | 3 cut(s) | 238, 910, 1295 |
| FaqI | GGGAC | 1 cut(s) | 1277 |
| FauNDI | CATATG | 1 cut(s) | 606 |
| FbaI | TGATCA | 1 cut(s) | 850 |
| Fnu4HI | GCNGC | 1 cut(s) | 611 |
| FokI | GGATG | 3 cut(s) | 274, 524, 1172 |
| Fsp4HI | GCNGC | 1 cut(s) | 611 |
| FspBI | CTAG | 5 cut(s) | 258, 455, 819, 911, 1296 |
| GluI | GCNGC | 1 cut(s) | 611 |
| HaeIII | GGCC | 2 cut(s) | 19, 1282 |
| HapII | CCGG | 4 cut(s) | 175, 335, 382, 1209 |
| HinfI | GANTC | 3 cut(s) | 303, 480, 668 |
| HpaII | CCGG | 4 cut(s) | 175, 335, 382, 1209 |
| HphI | GGTGA | 4 cut(s) | 62, 478, 851, 1139 |
| Hpy166II | GTNNAC | 2 cut(s) | 888, 959 |
| Hpy188I | TCNGA | 7 cut(s) | 157, 299, 598, 649, 1107, 1221, 1335 |
| Hpy188III | TCNNGA | 9 cut(s) | 27, 214, 307, 541, 796, 986, 1008, 1067, 1250 |
| Hpy8I | GTNNAC | 2 cut(s) | 888, 959 |
| Hpy99I | CGWCG | 1 cut(s) | 274 |
| HpyAV | CCTTC | 5 cut(s) | 171, 503, 624, 1118, 1124 |
| HpyCH4III | ACNGT | 6 cut(s) | 764, 832, 1118, 1241, 1264, 1275 |
| HpyCH4IV | ACGT | 2 cut(s) | 394, 589 |
| HpyCH4V | TGCA | 8 cut(s) | 316, 411, 564, 604, 634, 888, 934, 1197 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 610, 971 |
| HpyF3I | CTNAG | 6 cut(s) | 83, 201, 462, 552, 648, 1054 |
| HpySE526I | ACGT | 2 cut(s) | 394, 589 |
| KpnI | GGTACC | 1 cut(s) | 1274 |
| Ksp22I | TGATCA | 1 cut(s) | 850 |
| Kzo9I | GATC | 8 cut(s) | 52, 157, 520, 636, 850, 880, 1004, 1102 |
| LguI | GCTCTTC | 1 cut(s) | 324 |
| LweI | GCATC | 4 cut(s) | 52, 107, 187, 591 |
| MaeI | CTAG | 5 cut(s) | 258, 455, 819, 911, 1296 |
| MaeII | ACGT | 2 cut(s) | 394, 589 |
| MaeIII | GTNAC | 5 cut(s) | 457, 466, 488, 758, 897 |
| MalI | GATC | 8 cut(s) | 54, 159, 522, 638, 852, 882, 1006, 1104 |
| MboI | GATC | 8 cut(s) | 52, 157, 520, 636, 850, 880, 1004, 1102 |
| MboII | GAAGA | 8 cut(s) | 46, 312, 341, 431, 631, 636, 1001, 1234 |
| MflI | RGATCY | 2 cut(s) | 636, 1004 |
| MhlI | GDGCHC | 1 cut(s) | 890 |
| MluI | ACGCGT | 1 cut(s) | 890 |
| MlyI | GAGTC | 2 cut(s) | 297, 677 |
| Mph1103I | ATGCAT | 1 cut(s) | 606 |
| MroXI | GAANNNNTTC | 2 cut(s) | 432, 791 |
| MseI | TTAA | 5 cut(s) | 276, 284, 546, 696, 1205 |
| MslI | CAYNNNNRTG | 3 cut(s) | 427, 464, 1190 |
| MspI | CCGG | 4 cut(s) | 175, 335, 382, 1209 |
| MvnI | CGCG | 1 cut(s) | 892 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 610, 971 |
| NdeI | CATATG | 1 cut(s) | 606 |
| NdeII | GATC | 8 cut(s) | 52, 157, 520, 636, 850, 880, 1004, 1102 |
| NlaIV | GGNNCC | 1 cut(s) | 1272 |
| NmuCI | GTSAC | 4 cut(s) | 457, 466, 488, 758 |
| NsiI | ATGCAT | 1 cut(s) | 606 |
| NspI | RCATGY | 1 cut(s) | 965 |
| NspV | TTCGAA | 1 cut(s) | 426 |
| OliI | CACNNNNGTG | 1 cut(s) | 464 |
| PagI | TCATGA | 5 cut(s) | 213, 306, 795, 985, 1249 |
| PciSI | GCTCTTC | 1 cut(s) | 324 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 889 |
| PdmI | GAANNNNTTC | 2 cut(s) | 432, 791 |
| PfeI | GAWTC | 1 cut(s) | 480 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 138 |
| PkrI | GCNGC | 1 cut(s) | 612 |
| PleI | GAGTC | 2 cut(s) | 297, 676 |
| PpsI | GAGTC | 2 cut(s) | 297, 676 |
| PshBI | ATTAAT | 1 cut(s) | 546 |
| PsiI | TTATAA | 2 cut(s) | 354, 572 |
| PspN4I | GGNNCC | 1 cut(s) | 1272 |
| PstI | CTGCAG | 1 cut(s) | 936 |
| PsuI | RGATCY | 2 cut(s) | 636, 1004 |
| RsaI | GTAC | 4 cut(s) | 223, 829, 958, 1272 |
| RsaNI | GTAC | 4 cut(s) | 222, 828, 957, 1271 |
| RseI | CAYNNNNRTG | 3 cut(s) | 427, 464, 1190 |
| SapI | GCTCTTC | 1 cut(s) | 324 |
| SaqAI | TTAA | 5 cut(s) | 276, 284, 546, 696, 1205 |
| SatI | GCNGC | 1 cut(s) | 611 |
| Sau3AI | GATC | 8 cut(s) | 52, 157, 520, 636, 850, 880, 1004, 1102 |
| ScaI | AGTACT | 1 cut(s) | 223 |
| SchI | GAGTC | 2 cut(s) | 297, 677 |
| SduI | GDGCHC | 1 cut(s) | 890 |
| SfaNI | GCATC | 4 cut(s) | 52, 107, 187, 591 |
| SfcI | CTRYAG | 2 cut(s) | 932, 946 |
| SfuI | TTCGAA | 1 cut(s) | 426 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 427, 464, 1190 |
| SmlI | CTYRAG | 1 cut(s) | 1154 |
| SmoI | CTYRAG | 1 cut(s) | 1154 |
| SsiI | CCGC | 2 cut(s) | 611, 1268 |
| SspMI | CTAG | 5 cut(s) | 258, 455, 819, 911, 1296 |
| StyI | CCWWGG | 3 cut(s) | 238, 910, 1295 |
| TaaI | ACNGT | 6 cut(s) | 764, 832, 1118, 1241, 1264, 1275 |
| TaiI | ACGT | 2 cut(s) | 397, 592 |
| TaqI | TCGA | 3 cut(s) | 115, 426, 1101 |
| TatI | WGTACW | 1 cut(s) | 221 |
| TauI | GCSGC | 1 cut(s) | 613 |
| TfiI | GAWTC | 1 cut(s) | 480 |
| Tru1I | TTAA | 5 cut(s) | 276, 284, 546, 696, 1205 |
| Tru9I | TTAA | 5 cut(s) | 276, 284, 546, 696, 1205 |
| TscAI | CASTG | 5 cut(s) | 128, 466, 769, 1053, 1244 |
| TseFI | GTSAC | 4 cut(s) | 457, 466, 488, 758 |
| Tsp45I | GTSAC | 4 cut(s) | 457, 466, 488, 758 |
| TspRI | CASTG | 5 cut(s) | 128, 466, 769, 1053, 1244 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 138 |
| VneI | GTGCAC | 1 cut(s) | 886 |
| VspI | ATTAAT | 1 cut(s) | 546 |
| XapI | RAATTY | 6 cut(s) | 248, 310, 623, 861, 905, 992 |
| XceI | RCATGY | 1 cut(s) | 965 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1004 |
| XmaJI | CCTAGG | 2 cut(s) | 910, 1295 |
| XmnI | GAANNNNTTC | 2 cut(s) | 432, 791 |
| XspI | CTAG | 5 cut(s) | 258, 455, 819, 911, 1296 |
| ZrmI | AGTACT | 1 cut(s) | 223 |
| Zsp2I | ATGCAT | 1 cut(s) | 606 |