Rmu_sc0000946.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000946.1
OG0000216
Physical Location & Seq
Forward (+)
37187 .. 37734
548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000946.1_g000006.1.cds

Sequence Viewer

Length: 489 bp
atgatcgattttgatcttaacctccctcctgctccagaacaaggaggagctgctgtggatgtgagatcagcagcaccaaaattgatgaataatagtattgatgatcttcctgatggtgaattgcttgaaatcctttatcgacttgcttgctataagtttgttgctcaatgcaagcgtgtctccaagcgttggtgcaatgaaccttcttttattggcgactttgtgcgtctcaaaagtgataagcagtcaccaattacacattctctgctgtattatagtggagtggaattcatcggcagattgtcatcttccaccaagccgctaactccattgttcgatagactcgtgagctttcacgctcaagcagtattgatcaacgcgattactacatctgcaatccatccacagtccgatgggttcctcttcctccacctcctcaagtctacaggttcacacgagcgggattcatctgcgatcttcctactataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

162

Amino Acids

17.98

Weight (kDa)

6.5

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 189
AccBSI CCGCTC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 443
AccII CGCG 1 cut(s) 380
AciI CCGC 2 cut(s) 320, 460
AcsI RAATTY 1 cut(s) 287
AfiI CCNNNNNNNGG 2 cut(s) 41, 189
AgsI TTSAA 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 244, 276
AluBI AGCT 2 cut(s) 50, 351
AluI AGCT 2 cut(s) 50, 351
Alw26I GTCTC 2 cut(s) 184, 233
ApeKI GCWGC 2 cut(s) 50, 71
ApoI RAATTY 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 128, 240
BauI CACGAG 2 cut(s) 344, 455
BbvI GCAGC 2 cut(s) 37, 83
BccI CCATC 3 cut(s) 107, 407, 408
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BclI TGATCA 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 184, 233
BfmI CTRYAG 1 cut(s) 444
BisI GCNGC 3 cut(s) 51, 72, 320
BlsI GCNGC 3 cut(s) 52, 73, 321
BmiI GGNNCC 1 cut(s) 419
BpmI CTGGAG 1 cut(s) 18
BpuEI CTTGAG 2 cut(s) 345, 422
Bsa29I ATCGAT 1 cut(s) 6
BsaBI GATNNNNATC 2 cut(s) 12, 304
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 189
Bse3DI GCAATG 1 cut(s) 202
Bse8I GATNNNNATC 2 cut(s) 12, 304
BseCI ATCGAT 1 cut(s) 6
BseGI GGATG 2 cut(s) 64, 400
BseJI GATNNNNATC 2 cut(s) 12, 304
BseLI CCNNNNNNNGG 2 cut(s) 41, 189
BseMI GCAATG 1 cut(s) 202
BseRI GAGGAG 2 cut(s) 60, 425
BseXI GCAGC 2 cut(s) 37, 83
Bsh1236I CGCG 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 41, 189
BsmAI GTCTC 2 cut(s) 184, 233
BsmBI CGTCTC 1 cut(s) 233
Bsp143I GATC 6 cut(s) 3, 13, 65, 103, 372, 474
BspACI CCGC 2 cut(s) 320, 460
BspDI ATCGAT 1 cut(s) 6
BspFNI CGCG 1 cut(s) 380
BspLI GGNNCC 1 cut(s) 419
BsrBI CCGCTC 1 cut(s) 460
BsrDI GCAATG 1 cut(s) 202
BssMI GATC 6 cut(s) 3, 13, 65, 103, 372, 474
BssSI CACGAG 2 cut(s) 344, 455
Bst2BI CACGAG 2 cut(s) 344, 455
Bst4CI ACNGT 1 cut(s) 408
Bst6I CTCTTC 1 cut(s) 428
BstC8I GCNNGC 2 cut(s) 148, 173
BstF5I GGATG 2 cut(s) 64, 400
BstFNI CGCG 1 cut(s) 380
BstKTI GATC 6 cut(s) 6, 16, 68, 106, 375, 477
BstMAI GTCTC 2 cut(s) 184, 233
BstMBI GATC 6 cut(s) 3, 13, 65, 103, 372, 474
BstSFI CTRYAG 1 cut(s) 444
BstUI CGCG 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 37, 83
Bsu15I ATCGAT 1 cut(s) 6
BsuTUI ATCGAT 1 cut(s) 6
BtsCI GGATG 2 cut(s) 64, 400
Cac8I GCNNGC 2 cut(s) 148, 173
ClaI ATCGAT 1 cut(s) 6
CseI GACGC 1 cut(s) 215
CviJI RGCY 3 cut(s) 50, 319, 351
CviKI_1 RGCY 3 cut(s) 50, 319, 351
DpnI GATC 6 cut(s) 5, 15, 67, 105, 374, 476
DpnII GATC 6 cut(s) 3, 13, 65, 103, 372, 474
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
EcoRI GAATTC 1 cut(s) 287
Esp3I CGTCTC 1 cut(s) 233
FaiI YATR 3 cut(s) 153, 276, 487
FauI CCCGC 1 cut(s) 453
FbaI TGATCA 1 cut(s) 372
FblI GTMKAC 1 cut(s) 443
Fnu4HI GCNGC 3 cut(s) 51, 72, 320
FokI GGATG 2 cut(s) 71, 387
Fsp4HI GCNGC 3 cut(s) 51, 72, 320
GluI GCNGC 3 cut(s) 51, 72, 320
GsuI CTGGAG 1 cut(s) 18
HgaI GACGC 1 cut(s) 215
HinfI GANTC 2 cut(s) 342, 464
HphI GGTGA 2 cut(s) 128, 240
Hpy166II GTNNAC 2 cut(s) 444, 452
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 3 cut(s) 35, 110, 346
Hpy8I GTNNAC 2 cut(s) 444, 452
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4V TGCA 3 cut(s) 171, 195, 395
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 6 cut(s) 3, 13, 65, 103, 372, 474
LmnI GCTCC 2 cut(s) 37, 47
LpnPI CCDG 4 cut(s) 42, 48, 123, 432
Lsp1109I GCAGC 2 cut(s) 37, 83
MaeIII GTNAC 1 cut(s) 246
MalI GATC 6 cut(s) 5, 15, 67, 105, 374, 476
MbiI CCGCTC 1 cut(s) 460
MboI GATC 6 cut(s) 3, 13, 65, 103, 372, 474
MboII GAAGA 4 cut(s) 98, 300, 415, 469
MluCI AATT 4 cut(s) 80, 119, 252, 287
MlyI GAGTC 1 cut(s) 336
MnlI CCTC 7 cut(s) 32, 36, 38, 431, 437, 443, 446
MseI TTAA 1 cut(s) 18
MvnI CGCG 1 cut(s) 380
NdeII GATC 6 cut(s) 3, 13, 65, 103, 372, 474
NlaIV GGNNCC 1 cut(s) 419
NmuCI GTSAC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PfeI GAWTC 1 cut(s) 464
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 3 cut(s) 52, 73, 321
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 419
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 3 cut(s) 51, 72, 320
Sau3AI GATC 6 cut(s) 3, 13, 65, 103, 372, 474
SchI GAGTC 1 cut(s) 336
SetI ASST 6 cut(s) 24, 52, 205, 353, 435, 451
SfcI CTRYAG 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 360, 437
SmoI CTYRAG 2 cut(s) 360, 437
Sse9I AATT 4 cut(s) 80, 119, 252, 287
SsiI CCGC 2 cut(s) 320, 460
TaaI ACNGT 1 cut(s) 408
TaqI TCGA 3 cut(s) 6, 139, 336
TasI AATT 4 cut(s) 80, 119, 252, 287
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseFI GTSAC 1 cut(s) 246
TseI GCWGC 2 cut(s) 50, 71
Tsp45I GTSAC 1 cut(s) 246
TspDTI ATGAA 4 cut(s) 101, 213, 280, 456
Van91I CCANNNNNTGG 1 cut(s) 189
XapI RAATTY 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.