Rmu_sc0000946.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000946.1
OG0000216
Physical Location & Seq
Forward (+)
52466 .. 53023
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000946.1_g000013.1.cds

Sequence Viewer

Length: 558 bp
atggcatgctgcatgtattttgtgggtgatgaacctggtgatcaaaattttcttatggggttggatccattcatgatcaacaatagtaatagtgctcttagtttatctagtactaatggtgacaatatcattgatcactataaatgtcgtttcattcgatttgatgctccagactcttttctacttcgctatcttggtgaatacaaagggtgtctgcacatgtgcgactatcatgatcatacctctactctttttgttcgggaagctgacaaattatgtttggaaggcatgatgaaggattattcactggacataaaaatggttctgggttatgatattgttgatttacgatttttagaccccaataacgaggatattttatatatgtacatagtcaaagacattgtcaggtacaacattcgaacaagagatcggttaaagctggttgaaaacattccctatgggaattcttttctctttccaattgtgctcccttggtggccaacaccagttcctagactaccaccacacgcccaacctgcaggaataaatttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

185

Amino Acids

21.51

Weight (kDa)

5.1

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 547
AclWI GGATC 2 cut(s) 59, 72
AcoI YGGCCR 1 cut(s) 500
AcsI RAATTY 3 cut(s) 46, 466, 550
AfaI GTAC 3 cut(s) 112, 389, 413
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 1 cut(s) 449
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 2 cut(s) 266, 442
AluI AGCT 2 cut(s) 266, 442
Alw21I GWGCWC 2 cut(s) 97, 492
AlwI GGATC 2 cut(s) 59, 72
AoxI GGCC 1 cut(s) 500
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 3 cut(s) 46, 466, 550
ArsI GACNNNNNNTTYG 2 cut(s) 390, 422
Asp700I GAANNNNTTC 1 cut(s) 453
AsuHPI GGTGA 4 cut(s) 38, 50, 131, 209
AsuII TTCGAA 1 cut(s) 421
BalI TGGCCA 1 cut(s) 502
BamHI GGATCC 1 cut(s) 64
Bbv12I GWGCWC 2 cut(s) 97, 492
BciT130I CCWGG 1 cut(s) 36
BclI TGATCA 4 cut(s) 40, 75, 133, 235
BfaI CTAG 2 cut(s) 108, 516
BfmI CTRYAG 1 cut(s) 540
BfuAI ACCTGC 1 cut(s) 547
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
BmcAI AGTACT 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 421
BsaJI CCNNGG 1 cut(s) 494
Bse1I ACTGG 2 cut(s) 312, 509
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 494
BseNI ACTGG 2 cut(s) 312, 509
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 502
BsiHKAI GWGCWC 2 cut(s) 97, 492
BsnI GGCC 1 cut(s) 502
Bsp119I TTCGAA 1 cut(s) 421
Bsp1286I GDGCHC 2 cut(s) 97, 492
Bsp1407I TGTACA 1 cut(s) 387
Bsp143I GATC 6 cut(s) 40, 64, 75, 133, 235, 430
BspANI GGCC 1 cut(s) 502
BspHI TCATGA 2 cut(s) 72, 232
BspLI GGNNCC 1 cut(s) 66
BspMAI CTGCAG 1 cut(s) 544
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 2 cut(s) 59, 72
BspT104I TTCGAA 1 cut(s) 421
BsrGI TGTACA 1 cut(s) 387
BsrI ACTGG 2 cut(s) 312, 509
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 6 cut(s) 40, 64, 75, 133, 235, 430
BssT1I CCWWGG 1 cut(s) 494
Bst2UI CCWGG 1 cut(s) 36
BstAUI TGTACA 1 cut(s) 387
BstBI TTCGAA 1 cut(s) 421
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 98
BstKTI GATC 6 cut(s) 43, 67, 78, 136, 238, 433
BstMBI GATC 6 cut(s) 40, 64, 75, 133, 235, 430
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstNI CCWGG 1 cut(s) 36
BstNSI RCATGY 3 cut(s) 9, 16, 223
BstSCI CCNGG 1 cut(s) 34
BstSFI CTRYAG 1 cut(s) 540
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 1 cut(s) 502
BtsIMutI CAGTG 1 cut(s) 305
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 1 cut(s) 7
CciI TCATGA 2 cut(s) 72, 232
CsiI ACCWGGT 1 cut(s) 34
Csp6I GTAC 3 cut(s) 111, 388, 412
CviAII CATG 6 cut(s) 6, 13, 73, 220, 233, 289
CviJI RGCY 3 cut(s) 266, 442, 502
CviKI_1 RGCY 3 cut(s) 266, 442, 502
CviQI GTAC 3 cut(s) 111, 388, 412
DdeI CTNAG 1 cut(s) 98
DpnI GATC 6 cut(s) 42, 66, 77, 135, 237, 432
DpnII GATC 6 cut(s) 40, 64, 75, 133, 235, 430
EaeI YGGCCR 1 cut(s) 500
Eco130I CCWWGG 1 cut(s) 494
EcoRI GAATTC 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 494
FaeI CATG 6 cut(s) 9, 16, 76, 223, 236, 292
FatI CATG 6 cut(s) 5, 12, 72, 219, 232, 288
FbaI TGATCA 4 cut(s) 40, 75, 133, 235
Fnu4HI GCNGC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 2 cut(s) 108, 516
GluI GCNGC 1 cut(s) 10
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 1 cut(s) 502
Hin1II CATG 6 cut(s) 9, 16, 76, 223, 236, 292
HinfI GANTC 1 cut(s) 173
HphI GGTGA 4 cut(s) 38, 50, 131, 209
Hpy188I TCNGA 1 cut(s) 557
Hpy188III TCNNGA 4 cut(s) 73, 170, 233, 260
HpyAV CCTTC 2 cut(s) 278, 289
HpyCH4V TGCA 3 cut(s) 12, 217, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 1 cut(s) 98
Hsp92II CATG 6 cut(s) 9, 16, 76, 223, 236, 292
Ksp22I TGATCA 4 cut(s) 40, 75, 133, 235
Kzo9I GATC 6 cut(s) 40, 64, 75, 133, 235, 430
LmnI GCTCC 2 cut(s) 172, 495
LweI GCATC 1 cut(s) 154
MabI ACCWGGT 1 cut(s) 34
MaeI CTAG 2 cut(s) 108, 516
MaeIII GTNAC 1 cut(s) 119
MalI GATC 6 cut(s) 42, 66, 77, 135, 237, 432
MboI GATC 6 cut(s) 40, 64, 75, 133, 235, 430
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 2 cut(s) 97, 492
MlsI TGGCCA 1 cut(s) 502
MluCI AATT 5 cut(s) 46, 272, 466, 483, 550
MluNI TGGCCA 1 cut(s) 502
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 2 cut(s) 253, 364
Mox20I TGGCCA 1 cut(s) 502
MroXI GAANNNNTTC 1 cut(s) 453
MscI TGGCCA 1 cut(s) 502
MseI TTAA 1 cut(s) 437
MslI CAYNNNNRTG 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 502
MspR9I CCNGG 1 cut(s) 36
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 539
NdeII GATC 6 cut(s) 40, 64, 75, 133, 235, 430
NlaIII CATG 6 cut(s) 9, 16, 76, 223, 236, 292
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 119
NspI RCATGY 3 cut(s) 9, 16, 223
NspV TTCGAA 1 cut(s) 421
PaeI GCATGC 1 cut(s) 9
PagI TCATGA 2 cut(s) 72, 232
PciI ACATGT 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 453
PflFI GACNNNGTC 1 cut(s) 404
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PscI ACATGT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 66
PstI CTGCAG 1 cut(s) 544
PsuI RGATCY 1 cut(s) 64
PsyI GACNNNGTC 1 cut(s) 404
RsaI GTAC 3 cut(s) 112, 389, 413
RsaNI GTAC 3 cut(s) 111, 388, 412
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 1 cut(s) 437
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 6 cut(s) 40, 64, 75, 133, 235, 430
SbfI CCTGCAGG 1 cut(s) 544
ScaI AGTACT 1 cut(s) 112
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 36
SdaI CCTGCAGG 1 cut(s) 544
SduI GDGCHC 2 cut(s) 97, 492
SetI ASST 6 cut(s) 37, 245, 268, 413, 444, 541
SexAI ACCWGGT 1 cut(s) 34
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 540
SfuI TTCGAA 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 317
SphI GCATGC 1 cut(s) 9
Sse8387I CCTGCAGG 1 cut(s) 544
Sse9I AATT 5 cut(s) 46, 272, 466, 483, 550
SspMI CTAG 2 cut(s) 108, 516
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 494
TaqI TCGA 2 cut(s) 157, 421
TasI AATT 5 cut(s) 46, 272, 466, 483, 550
TatI WGTACW 2 cut(s) 110, 387
Tru1I TTAA 1 cut(s) 437
Tru9I TTAA 1 cut(s) 437
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 4 cut(s) 45, 61, 142, 308
TspRI CASTG 1 cut(s) 312
Tth111I GACNNNGTC 1 cut(s) 404
XapI RAATTY 3 cut(s) 46, 466, 550
XceI RCATGY 3 cut(s) 9, 16, 223
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 2 cut(s) 108, 516
ZrmI AGTACT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.