transcription factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HLH | PF00010 | 33 - 81 | 4.5e-16 | Helix-loop-helix DNA-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 465 |
| AclWI | GGATC | 1 cut(s) | 301 |
| AcoI | YGGCCR | 1 cut(s) | 632 |
| AcsI | RAATTY | 2 cut(s) | 256, 340 |
| AgeI | ACCGGT | 1 cut(s) | 96 |
| AgsI | TTSAA | 4 cut(s) | 38, 155, 733, 797 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 946 |
| AjnI | CCWGG | 3 cut(s) | 311, 331, 777 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 789, 821 |
| AleI | CACNNNNGTG | 1 cut(s) | 486 |
| AluBI | AGCT | 2 cut(s) | 497, 560 |
| AluI | AGCT | 2 cut(s) | 497, 560 |
| Alw21I | GWGCWC | 1 cut(s) | 562 |
| Alw26I | GTCTC | 1 cut(s) | 954 |
| AlwI | GGATC | 1 cut(s) | 301 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 859 |
| AoxI | GGCC | 4 cut(s) | 329, 632, 780, 826 |
| ApeKI | GCWGC | 1 cut(s) | 458 |
| ApoI | RAATTY | 2 cut(s) | 256, 340 |
| AseI | ATTAAT | 2 cut(s) | 141, 672 |
| AsiGI | ACCGGT | 1 cut(s) | 96 |
| AsuC2I | CCSGG | 1 cut(s) | 636 |
| AsuHPI | GGTGA | 1 cut(s) | 409 |
| BanII | GRGCYC | 2 cut(s) | 562, 891 |
| BbsI | GAAGAC | 1 cut(s) | 45 |
| Bbv12I | GWGCWC | 1 cut(s) | 562 |
| BbvI | GCAGC | 1 cut(s) | 445 |
| BccI | CCATC | 2 cut(s) | 276, 511 |
| BciT130I | CCWGG | 3 cut(s) | 313, 333, 779 |
| BclI | TGATCA | 1 cut(s) | 184 |
| BcnI | CCSGG | 1 cut(s) | 636 |
| BcoDI | GTCTC | 1 cut(s) | 954 |
| BfaI | CTAG | 3 cut(s) | 476, 494, 846 |
| BisI | GCNGC | 1 cut(s) | 459 |
| BlsI | GCNGC | 1 cut(s) | 460 |
| Bme1390I | CCNGG | 4 cut(s) | 313, 333, 636, 779 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 946 |
| BmrFI | CCNGG | 4 cut(s) | 313, 333, 636, 779 |
| BmsI | GCATC | 3 cut(s) | 711, 795, 851 |
| BpiI | GAAGAC | 1 cut(s) | 45 |
| BpmI | CTGGAG | 2 cut(s) | 354, 404 |
| BpuEI | CTTGAG | 4 cut(s) | 342, 691, 705, 905 |
| BpuMI | CCSGG | 1 cut(s) | 636 |
| BsaJI | CCNNGG | 4 cut(s) | 15, 277, 311, 777 |
| BsaWI | WCCGGW | 1 cut(s) | 96 |
| Bse118I | RCCGGY | 1 cut(s) | 96 |
| Bse3DI | GCAATG | 1 cut(s) | 572 |
| BseBI | CCWGG | 3 cut(s) | 313, 333, 779 |
| BseDI | CCNNGG | 4 cut(s) | 15, 277, 311, 777 |
| BseGI | GGATG | 3 cut(s) | 287, 503, 688 |
| BseMI | GCAATG | 1 cut(s) | 572 |
| BseMII | CTCAG | 1 cut(s) | 447 |
| BseRI | GAGGAG | 1 cut(s) | 145 |
| BseXI | GCAGC | 1 cut(s) | 445 |
| Bsh1285I | CGRYCG | 1 cut(s) | 101 |
| BshFI | GGCC | 4 cut(s) | 331, 634, 782, 828 |
| BshTI | ACCGGT | 1 cut(s) | 96 |
| BsiEI | CGRYCG | 1 cut(s) | 101 |
| BsiHKAI | GWGCWC | 1 cut(s) | 562 |
| BsiSI | CCGG | 2 cut(s) | 97, 635 |
| BslFI | GGGAC | 1 cut(s) | 760 |
| BsmAI | GTCTC | 1 cut(s) | 954 |
| BsmFI | GGGAC | 1 cut(s) | 760 |
| BsnI | GGCC | 4 cut(s) | 331, 634, 782, 828 |
| Bsp1286I | GDGCHC | 2 cut(s) | 562, 891 |
| Bsp143I | GATC | 5 cut(s) | 168, 184, 306, 349, 478 |
| BspANI | GGCC | 4 cut(s) | 331, 634, 782, 828 |
| BspCNI | CTCAG | 1 cut(s) | 446 |
| BspHI | TCATGA | 1 cut(s) | 363 |
| BspPI | GGATC | 1 cut(s) | 301 |
| BsrDI | GCAATG | 1 cut(s) | 572 |
| BsrFI | RCCGGY | 1 cut(s) | 96 |
| BssAI | RCCGGY | 1 cut(s) | 96 |
| BssECI | CCNNGG | 4 cut(s) | 15, 277, 311, 777 |
| BssMI | GATC | 5 cut(s) | 168, 184, 306, 349, 478 |
| BssNAI | GTATAC | 1 cut(s) | 466 |
| BssT1I | CCWWGG | 2 cut(s) | 15, 277 |
| Bst1107I | GTATAC | 1 cut(s) | 466 |
| Bst2UI | CCWGG | 3 cut(s) | 313, 333, 779 |
| Bst4CI | ACNGT | 4 cut(s) | 237, 655, 665, 824 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 574 |
| BstC8I | GCNNGC | 1 cut(s) | 784 |
| BstDEI | CTNAG | 1 cut(s) | 433 |
| BstF5I | GGATG | 3 cut(s) | 287, 503, 688 |
| BstKTI | GATC | 5 cut(s) | 171, 187, 309, 352, 481 |
| BstMAI | GTCTC | 1 cut(s) | 954 |
| BstMBI | GATC | 5 cut(s) | 168, 184, 306, 349, 478 |
| BstMCI | CGRYCG | 1 cut(s) | 101 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 68, 407, 574, 914 |
| BstNI | CCWGG | 3 cut(s) | 313, 333, 779 |
| BstNSI | RCATGY | 1 cut(s) | 949 |
| BstSCI | CCNGG | 4 cut(s) | 311, 331, 634, 777 |
| BstV1I | GCAGC | 1 cut(s) | 445 |
| BstV2I | GAAGAC | 1 cut(s) | 45 |
| BstZ17I | GTATAC | 1 cut(s) | 466 |
| BsuRI | GGCC | 4 cut(s) | 331, 634, 782, 828 |
| BtsCI | GGATG | 3 cut(s) | 287, 503, 688 |
| BtsI | GCAGTG | 1 cut(s) | 749 |
| BtsIMutI | CAGTG | 3 cut(s) | 441, 749, 904 |
| Cac8I | GCNNGC | 1 cut(s) | 784 |
| CaiI | CAGNNNCTG | 1 cut(s) | 859 |
| CciI | TCATGA | 1 cut(s) | 363 |
| Cfr10I | RCCGGY | 1 cut(s) | 96 |
| CspAI | ACCGGT | 1 cut(s) | 96 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 865, 900 |
| CviAII | CATG | 5 cut(s) | 26, 245, 364, 604, 946 |
| DdeI | CTNAG | 1 cut(s) | 433 |
| DpnI | GATC | 5 cut(s) | 170, 186, 308, 351, 480 |
| DpnII | GATC | 5 cut(s) | 168, 184, 306, 349, 478 |
| DriI | GACNNNNNGTC | 1 cut(s) | 946 |
| EaeI | YGGCCR | 1 cut(s) | 632 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 946 |
| Ecl136II | GAGCTC | 1 cut(s) | 560 |
| Eco130I | CCWWGG | 2 cut(s) | 15, 277 |
| Eco147I | AGGCCT | 1 cut(s) | 331 |
| Eco24I | GRGCYC | 2 cut(s) | 562, 891 |
| Eco53kI | GAGCTC | 1 cut(s) | 560 |
| EcoICRI | GAGCTC | 1 cut(s) | 560 |
| EcoRII | CCWGG | 3 cut(s) | 311, 331, 777 |
| EcoT14I | CCWWGG | 2 cut(s) | 15, 277 |
| EcoT38I | GRGCYC | 2 cut(s) | 562, 891 |
| ErhI | CCWWGG | 2 cut(s) | 15, 277 |
| FaeI | CATG | 5 cut(s) | 29, 248, 367, 607, 949 |
| FaqI | GGGAC | 1 cut(s) | 760 |
| FatI | CATG | 5 cut(s) | 25, 244, 363, 603, 945 |
| FbaI | TGATCA | 1 cut(s) | 184 |
| FblI | GTMKAC | 1 cut(s) | 465 |
| Fnu4HI | GCNGC | 1 cut(s) | 459 |
| FokI | GGATG | 3 cut(s) | 294, 490, 695 |
| FriOI | GRGCYC | 2 cut(s) | 562, 891 |
| Fsp4HI | GCNGC | 1 cut(s) | 459 |
| FspBI | CTAG | 3 cut(s) | 476, 494, 846 |
| GluI | GCNGC | 1 cut(s) | 459 |
| GsuI | CTGGAG | 2 cut(s) | 354, 404 |
| HaeIII | GGCC | 4 cut(s) | 331, 634, 782, 828 |
| HapII | CCGG | 2 cut(s) | 97, 635 |
| Hin1II | CATG | 5 cut(s) | 29, 248, 367, 607, 949 |
| HinfI | GANTC | 6 cut(s) | 286, 440, 452, 581, 866, 911 |
| HpaII | CCGG | 2 cut(s) | 97, 635 |
| HphI | GGTGA | 1 cut(s) | 409 |
| Hpy166II | GTNNAC | 3 cut(s) | 466, 491, 851 |
| Hpy188I | TCNGA | 4 cut(s) | 112, 189, 445, 741 |
| Hpy188III | TCNNGA | 3 cut(s) | 290, 364, 383 |
| Hpy8I | GTNNAC | 3 cut(s) | 466, 491, 851 |
| HpyAV | CCTTC | 2 cut(s) | 68, 120 |
| HpyCH4III | ACNGT | 4 cut(s) | 237, 655, 665, 824 |
| HpyCH4V | TGCA | 5 cut(s) | 347, 425, 577, 754, 945 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 68, 407, 574, 914 |
| HpyF3I | CTNAG | 1 cut(s) | 433 |
| Hsp92II | CATG | 5 cut(s) | 29, 248, 367, 607, 949 |
| Ksp22I | TGATCA | 1 cut(s) | 184 |
| Kzo9I | GATC | 5 cut(s) | 168, 184, 306, 349, 478 |
| LmnI | GCTCC | 2 cut(s) | 132, 565 |
| Lsp1109I | GCAGC | 1 cut(s) | 445 |
| LweI | GCATC | 3 cut(s) | 711, 795, 851 |
| MaeI | CTAG | 3 cut(s) | 476, 494, 846 |
| MaeIII | GTNAC | 3 cut(s) | 655, 747, 901 |
| MalI | GATC | 5 cut(s) | 170, 186, 308, 351, 480 |
| MboI | GATC | 5 cut(s) | 168, 184, 306, 349, 478 |
| MboII | GAAGA | 4 cut(s) | 50, 62, 103, 262 |
| MfeI | CAATTG | 1 cut(s) | 626 |
| MhlI | GDGCHC | 2 cut(s) | 562, 891 |
| MluCI | AATT | 4 cut(s) | 256, 340, 626, 669 |
| MlyI | GAGTC | 1 cut(s) | 446 |
| MmeI | TCCRAC | 2 cut(s) | 787, 918 |
| MnlI | CCTC | 5 cut(s) | 123, 211, 259, 412, 769 |
| MseI | TTAA | 3 cut(s) | 141, 672, 872 |
| MslI | CAYNNNNRTG | 1 cut(s) | 486 |
| MspI | CCGG | 2 cut(s) | 97, 635 |
| MspR9I | CCNGG | 4 cut(s) | 313, 333, 636, 779 |
| MunI | CAATTG | 1 cut(s) | 626 |
| MvaI | CCWGG | 3 cut(s) | 313, 333, 779 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 68, 407, 574, 914 |
| NciI | CCSGG | 1 cut(s) | 636 |
| NdeII | GATC | 5 cut(s) | 168, 184, 306, 349, 478 |
| NlaIII | CATG | 5 cut(s) | 29, 248, 367, 607, 949 |
| NmuCI | GTSAC | 2 cut(s) | 747, 901 |
| NspI | RCATGY | 1 cut(s) | 949 |
| OliI | CACNNNNGTG | 1 cut(s) | 486 |
| PagI | TCATGA | 1 cut(s) | 363 |
| PceI | AGGCCT | 1 cut(s) | 331 |
| PfeI | GAWTC | 5 cut(s) | 286, 440, 581, 866, 911 |
| PflFI | GACNNNGTC | 1 cut(s) | 745 |
| PinAI | ACCGGT | 1 cut(s) | 96 |
| PkrI | GCNGC | 1 cut(s) | 460 |
| PleI | GAGTC | 1 cut(s) | 446 |
| PpsI | GAGTC | 1 cut(s) | 446 |
| PshBI | ATTAAT | 2 cut(s) | 141, 672 |
| Psp124BI | GAGCTC | 1 cut(s) | 562 |
| Psp6I | CCWGG | 3 cut(s) | 311, 331, 777 |
| PspGI | CCWGG | 3 cut(s) | 311, 331, 777 |
| PstNI | CAGNNNCTG | 1 cut(s) | 859 |
| PsyI | GACNNNGTC | 1 cut(s) | 745 |
| RseI | CAYNNNNRTG | 1 cut(s) | 486 |
| SacI | GAGCTC | 1 cut(s) | 562 |
| SaqAI | TTAA | 3 cut(s) | 141, 672, 872 |
| SatI | GCNGC | 1 cut(s) | 459 |
| Sau3AI | GATC | 5 cut(s) | 168, 184, 306, 349, 478 |
| SchI | GAGTC | 1 cut(s) | 446 |
| ScrFI | CCNGG | 4 cut(s) | 313, 333, 636, 779 |
| SduI | GDGCHC | 2 cut(s) | 562, 891 |
| SetI | ASST | 5 cut(s) | 85, 222, 499, 562, 858 |
| SfaNI | GCATC | 3 cut(s) | 711, 795, 851 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 486 |
| SmlI | CTYRAG | 4 cut(s) | 357, 706, 720, 884 |
| SmoI | CTYRAG | 4 cut(s) | 357, 706, 720, 884 |
| Sse9I | AATT | 4 cut(s) | 256, 340, 626, 669 |
| SseBI | AGGCCT | 1 cut(s) | 331 |
| SspI | AATATT | 1 cut(s) | 933 |
| SspMI | CTAG | 3 cut(s) | 476, 494, 846 |
| SstI | GAGCTC | 1 cut(s) | 562 |
| StuI | AGGCCT | 1 cut(s) | 331 |
| StyD4I | CCNGG | 4 cut(s) | 311, 331, 634, 777 |
| StyI | CCWWGG | 2 cut(s) | 15, 277 |
| TaaI | ACNGT | 4 cut(s) | 237, 655, 665, 824 |
| TaqI | TCGA | 2 cut(s) | 101, 814 |
| TasI | AATT | 4 cut(s) | 256, 340, 626, 669 |
| TfiI | GAWTC | 5 cut(s) | 286, 440, 581, 866, 911 |
| Tru1I | TTAA | 3 cut(s) | 141, 672, 872 |
| Tru9I | TTAA | 3 cut(s) | 141, 672, 872 |
| TscAI | CASTG | 3 cut(s) | 441, 756, 904 |
| TseFI | GTSAC | 2 cut(s) | 747, 901 |
| TseI | GCWGC | 1 cut(s) | 458 |
| Tsp45I | GTSAC | 2 cut(s) | 747, 901 |
| TspDTI | ATGAA | 5 cut(s) | 63, 261, 380, 533, 699 |
| TspGWI | ACGGA | 1 cut(s) | 496 |
| TspRI | CASTG | 3 cut(s) | 441, 756, 904 |
| Tth111I | GACNNNGTC | 1 cut(s) | 745 |
| VspI | ATTAAT | 2 cut(s) | 141, 672 |
| XapI | RAATTY | 2 cut(s) | 256, 340 |
| XceI | RCATGY | 1 cut(s) | 949 |
| XmiI | GTMKAC | 1 cut(s) | 465 |
| XspI | CTAG | 3 cut(s) | 476, 494, 846 |