RchiOBHm_Chr2g0164671

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000216
Physical Location & Seq
Forward (+)
79687367 .. 79688751
1385 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53270

Sequence Viewer

Length: 540 bp
ATGAATATTGAAATTGATGATCTCCCGGATGTTGTGTTGGTTAAAATTCTTTGTCGGCTTCCATGCTATAAGTTTGTTTCAAAATGCAAGTCCGTGTCCAAGCGTTGGTGCAATGTCATGTCCGGTCCTTATTTTCTTGCCCGCTTTCTACGTCTCCAGAGTGATCGTGAGCAAACACCAATAATTCGTACTCTGATAACCAACAAACGGGAGGAGTTCCTTACTAGAATGTCATCGTCCACCAAGCCGCTAGCTCTGTTGTTTGAAAGACTCATGAGTTCCCACCATTTGGAACAAGAGCCGGTAGTGGTAGCTACGTATAATGACTTAGTTTTGTGCTGTACAACGTGGGGCTATTATCAACGTGATTACTACATCTGCAATCCGTGCACAGTTCAGTGGGTTCCTGTTCCTCCCCCTCCTCGTGTTTACCGTATACACCAGTGGGATTCATATGCGATCTTCCCTACTATAACTGTACAAAAGATGATCAGGGAGGAAGTTTCATTCAGGTCAATGCTGAGTATAGGTGCAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

179

Amino Acids

20.98

Weight (kDa)

8.93

Isoelectric Point (pI)

63.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 45 9.3e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 105, 289
AccI GTMKAC 1 cut(s) 436
AciI CCGC 2 cut(s) 142, 248
AcsI RAATTY 1 cut(s) 45
AfaI GTAC 3 cut(s) 190, 343, 480
AfiI CCNNNNNNNGG 3 cut(s) 105, 207, 289
AgsI TTSAA 3 cut(s) 11, 81, 266
AluBI AGCT 2 cut(s) 254, 314
AluI AGCT 2 cut(s) 254, 314
Alw21I GWGCWC 1 cut(s) 392
Alw26I GTCTC 1 cut(s) 158
Alw44I GTGCAC 1 cut(s) 388
ApaLI GTGCAC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 45
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 26
AsuNHI GCTAGC 1 cut(s) 250
AvaII GGWCC 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 392
BauI CACGAG 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 392
BclI TGATCA 1 cut(s) 489
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 2 cut(s) 225, 251
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 405
BmrFI CCNGG 1 cut(s) 26
BmtI GCTAGC 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 26
BsaAI YACGTR 1 cut(s) 318
BsaWI WCCGGW 1 cut(s) 122
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 207, 289
Bse118I RCCGGY 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 442
Bse3DI GCAATG 1 cut(s) 118
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 3 cut(s) 105, 207, 289
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 512
BseNI ACTGG 1 cut(s) 442
BseRI GAGGAG 2 cut(s) 227, 411
BseSI GKGCMC 1 cut(s) 392
BsiHKAI GWGCWC 1 cut(s) 392
BsiSI CCGG 3 cut(s) 26, 123, 302
BslI CCNNNNNNNGG 3 cut(s) 105, 207, 289
BsmAI GTCTC 1 cut(s) 158
BsmBI CGTCTC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 392
Bsp1407I TGTACA 2 cut(s) 341, 478
Bsp143I GATC 4 cut(s) 19, 163, 459, 489
BspACI CCGC 2 cut(s) 142, 248
BspCNI CTCAG 1 cut(s) 513
BspHI TCATGA 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 405
BspOI GCTAGC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 301
BsrGI TGTACA 2 cut(s) 341, 478
BsrI ACTGG 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 301
BssMI GATC 4 cut(s) 19, 163, 459, 489
BssNAI GTATAC 1 cut(s) 437
BssSI CACGAG 1 cut(s) 423
Bst1107I GTATAC 1 cut(s) 437
Bst2BI CACGAG 1 cut(s) 423
Bst4CI ACNGT 3 cut(s) 394, 434, 478
BstAPI GCANNNNNTGC 1 cut(s) 387
BstAUI TGTACA 2 cut(s) 341, 478
BstBAI YACGTR 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 142, 252
BstDEI CTNAG 2 cut(s) 328, 521
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 4 cut(s) 22, 166, 462, 492
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 4 cut(s) 19, 163, 459, 489
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 24
BstSLI GKGCMC 1 cut(s) 392
BstSNI TACGTA 1 cut(s) 318
BstZ17I GTATAC 1 cut(s) 437
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 2 cut(s) 404, 449
Cac8I GCNNGC 2 cut(s) 142, 252
CciI TCATGA 1 cut(s) 273
Cfr10I RCCGGY 1 cut(s) 301
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 3 cut(s) 189, 342, 479
CviAII CATG 3 cut(s) 63, 118, 274
CviJI RGCY 6 cut(s) 58, 247, 254, 301, 314, 354
CviKI_1 RGCY 6 cut(s) 58, 247, 254, 301, 314, 354
CviQI GTAC 3 cut(s) 189, 342, 479
DdeI CTNAG 2 cut(s) 328, 521
DpnI GATC 4 cut(s) 21, 165, 461, 491
DpnII GATC 4 cut(s) 19, 163, 459, 489
Eco105I TACGTA 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 125
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 3 cut(s) 66, 121, 277
FatI CATG 3 cut(s) 62, 117, 273
FauI CCCGC 1 cut(s) 149
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 489
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 1 cut(s) 248
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 248
FspBI CTAG 2 cut(s) 225, 251
GluI GCNGC 1 cut(s) 248
GsuI CTGGAG 1 cut(s) 140
HapII CCGG 3 cut(s) 26, 123, 302
Hin1II CATG 3 cut(s) 66, 121, 277
HinfI GANTC 2 cut(s) 270, 449
HpaII CCGG 3 cut(s) 26, 123, 302
Hpy166II GTNNAC 4 cut(s) 240, 390, 430, 437
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 3 cut(s) 157, 167, 274
Hpy8I GTNNAC 4 cut(s) 240, 390, 430, 437
HpyCH4III ACNGT 3 cut(s) 394, 434, 478
HpyCH4IV ACGT 4 cut(s) 151, 317, 347, 364
HpyCH4V TGCA 5 cut(s) 87, 111, 381, 390, 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 2 cut(s) 328, 521
HpySE526I ACGT 4 cut(s) 151, 317, 347, 364
Hsp92II CATG 3 cut(s) 66, 121, 277
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 4 cut(s) 19, 163, 459, 489
LpnPI CCDG 9 cut(s) 39, 136, 170, 315, 420, 455, 478, 496, 519
MaeI CTAG 2 cut(s) 225, 251
MaeII ACGT 4 cut(s) 151, 317, 347, 364
MalI GATC 4 cut(s) 21, 165, 461, 491
MboI GATC 4 cut(s) 19, 163, 459, 489
MboII GAAGA 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 3 cut(s) 12, 45, 183
MlyI GAGTC 1 cut(s) 264
MnlI CCTC 5 cut(s) 205, 423, 429, 432, 490
MseI TTAA 1 cut(s) 42
MspI CCGG 3 cut(s) 26, 123, 302
MspR9I CCNGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 387
NciI CCSGG 1 cut(s) 26
NdeI CATATG 1 cut(s) 454
NdeII GATC 4 cut(s) 19, 163, 459, 489
NheI GCTAGC 1 cut(s) 250
NlaIII CATG 3 cut(s) 66, 121, 277
NlaIV GGNNCC 1 cut(s) 405
PagI TCATGA 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 430
PfeI GAWTC 1 cut(s) 449
PflMI CCANNNNNTGG 2 cut(s) 105, 289
PfoI TCCNGGA 1 cut(s) 24
PkrI GCNGC 1 cut(s) 249
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Ppu21I YACGTR 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 1 cut(s) 125
RsaI GTAC 3 cut(s) 190, 343, 480
RsaNI GTAC 3 cut(s) 189, 342, 479
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 4 cut(s) 19, 163, 459, 489
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 1 cut(s) 392
SetI ASST 8 cut(s) 154, 256, 316, 320, 350, 367, 515, 532
SinI GGWCC 1 cut(s) 125
SnaBI TACGTA 1 cut(s) 318
Sse9I AATT 3 cut(s) 12, 45, 183
SsiI CCGC 2 cut(s) 142, 248
SspI AATATT 1 cut(s) 7
SspMI CTAG 2 cut(s) 225, 251
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 3 cut(s) 394, 434, 478
TaiI ACGT 4 cut(s) 154, 320, 350, 367
TasI AATT 3 cut(s) 12, 45, 183
TatI WGTACW 2 cut(s) 341, 478
TauI GCSGC 1 cut(s) 250
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 2 cut(s) 404, 449
TspDTI ATGAA 3 cut(s) 17, 441, 495
TspGWI ACGGA 2 cut(s) 82, 375
TspRI CASTG 2 cut(s) 404, 449
Van91I CCANNNNNTGG 2 cut(s) 105, 289
VneI GTGCAC 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 436
XspI CTAG 2 cut(s) 225, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.