Rmu_sc0002870.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002870.1
OG0000216
Physical Location & Seq
Reverse (-)
10956 .. 11930
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002870.1_g000002.1.cds

Sequence Viewer

Length: 975 bp
atgagagagagtacaatcgctattgataccaaaagagtttgcagtagttcccaatcatcacttgtagctgtacccgtctctgatcatattcatcactcgaaaacaataaaacgatcatcatcaatagcagtagcaacaagaccatcatcaatattgatgaataatactactattggtgatcttccggaggatgtgttggttgaaatcctgagtcgacttccttgctataaatatgtttctgagtgcaagtgtgtatccaagcgttggtgcagtctcatgtctgatcctagtttttttggtcgctttctgtgtctccaaagtgatcataaacggacacaaataatacgtactctgataaacagagacggggtggaattccttgctagactatcatcgtcgggcaagccgctaaccccgttattcgaaagacttgtgagttttcaccatttgaaagaagagccaattgtggtaggtacgtataatgacttggttttgtgctgtgccagcaattattatcaacgtgattactacatctgcaatccatacacatgccaatgggtacctcttcctccccctcctcaactctgcgagttcgcaccagtgggattcatctgcgatcttccttactaccagtataggaaagacgatgacaatcacgaccagaaaagacaatgcatccaacttaatgctgattttaggtacagggttgtgagattaattactgatcgtagaaatatatcctgcaaattcaaagtacagatcttctcttctgagaccggtgaatggactgaatcaattgtatcaacccaatcacttgttcggtatggtgacatcaatagccacatgaactttcagtacaatggggtgttgtattggatgagtcatgattgtacctttcttattggaaagataacggaaaatttaacggcgtacaccaaaatgaaagattggagcaaacttgatacaccattctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

324

Amino Acids

37.46

Weight (kDa)

8.43

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 559
AccB1I GGYRCC 1 cut(s) 559
AccB7I CCANNNNNTGG 1 cut(s) 264
AccI GTMKAC 1 cut(s) 214
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 1 cut(s) 407
AclWI GGATC 1 cut(s) 278
AcsI RAATTY 3 cut(s) 374, 746, 919
AfiI CCNNNNNNNGG 2 cut(s) 264, 783
AgeI ACCGGT 1 cut(s) 776
AgsI TTSAA 3 cut(s) 203, 451, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 801, 833
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw26I GTCTC 5 cut(s) 82, 278, 317, 357, 767
AlwI GGATC 1 cut(s) 278
Aor13HI TCCGGA 1 cut(s) 184
ApoI RAATTY 3 cut(s) 374, 746, 919
AseI ATTAAT 1 cut(s) 716
AsiGI ACCGGT 1 cut(s) 776
Asp718I GGTACC 1 cut(s) 559
AsuHPI GGTGA 4 cut(s) 188, 434, 791, 839
AsuII TTCGAA 1 cut(s) 423
BanI GGYRCC 1 cut(s) 559
BccI CCATC 1 cut(s) 151
BceAI ACGGC 1 cut(s) 942
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BciVI GTATCC 1 cut(s) 265
BclI TGATCA 2 cut(s) 82, 322
BcoDI GTCTC 5 cut(s) 82, 278, 317, 357, 767
BfaI CTAG 2 cut(s) 288, 384
BfuI GTATCC 1 cut(s) 265
BglII AGATCT 1 cut(s) 759
BisI GCNGC 1 cut(s) 407
BlsI GCNGC 1 cut(s) 408
BmiI GGNNCC 1 cut(s) 561
BmsI GCATC 1 cut(s) 684
Bpu14I TTCGAA 1 cut(s) 423
BsaAI YACGTR 2 cut(s) 347, 477
BsaBI GATNNNNATC 2 cut(s) 118, 651
BsaI GGTCTC 1 cut(s) 767
BsaWI WCCGGW 2 cut(s) 184, 776
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 783
Bse118I RCCGGY 1 cut(s) 776
Bse1I ACTGG 2 cut(s) 599, 631
Bse8I GATNNNNATC 2 cut(s) 118, 651
BseAI TCCGGA 1 cut(s) 184
BseGI GGATG 3 cut(s) 196, 675, 882
BseJI GATNNNNATC 2 cut(s) 118, 651
BseLI CCNNNNNNNGG 2 cut(s) 264, 783
BseMII CTCAG 3 cut(s) 200, 231, 762
BseNI ACTGG 2 cut(s) 599, 631
BseRI GAGGAG 1 cut(s) 567
BsgI GTGCAG 1 cut(s) 289
BshNI GGYRCC 1 cut(s) 559
BshTI ACCGGT 1 cut(s) 776
BsiSI CCGG 2 cut(s) 185, 777
BslI CCNNNNNNNGG 2 cut(s) 264, 783
BsmAI GTCTC 5 cut(s) 82, 278, 317, 357, 767
BsmBI CGTCTC 2 cut(s) 82, 357
Bso31I GGTCTC 1 cut(s) 767
Bsp119I TTCGAA 1 cut(s) 423
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 8 cut(s) 82, 113, 178, 283, 322, 616, 724, 759
BspACI CCGC 1 cut(s) 407
BspCNI CTCAG 3 cut(s) 201, 232, 763
BspEI TCCGGA 1 cut(s) 184
BspHI TCATGA 1 cut(s) 883
BspLI GGNNCC 1 cut(s) 561
BspPI GGATC 1 cut(s) 278
BspQI GCTCTTC 1 cut(s) 450
BspT104I TTCGAA 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 559
BspTNI GGTCTC 1 cut(s) 767
BsrFI RCCGGY 1 cut(s) 776
BsrI ACTGG 2 cut(s) 599, 631
BssAI RCCGGY 1 cut(s) 776
BssMI GATC 8 cut(s) 82, 113, 178, 283, 322, 616, 724, 759
Bst6I CTCTTC 3 cut(s) 450, 570, 772
BstBAI YACGTR 2 cut(s) 347, 477
BstBI TTCGAA 1 cut(s) 423
BstC8I GCNNGC 2 cut(s) 404, 505
BstDEI CTNAG 3 cut(s) 209, 240, 771
BstF5I GGATG 3 cut(s) 196, 675, 882
BstKTI GATC 8 cut(s) 85, 116, 181, 286, 325, 619, 727, 762
BstMAI GTCTC 5 cut(s) 82, 278, 317, 357, 767
BstMBI GATC 8 cut(s) 82, 113, 178, 283, 322, 616, 724, 759
BstMWI GCNNNNNNNGC 1 cut(s) 504
BstNSI RCATGY 1 cut(s) 552
BstSNI TACGTA 2 cut(s) 347, 477
BstX2I RGATCY 1 cut(s) 759
BstYI RGATCY 1 cut(s) 759
BsuI GTATCC 1 cut(s) 265
BtsCI GGATG 3 cut(s) 196, 675, 882
BtsIMutI CAGTG 1 cut(s) 606
Cac8I GCNNGC 2 cut(s) 404, 505
CciI TCATGA 1 cut(s) 883
Cfr10I RCCGGY 1 cut(s) 776
CspAI ACCGGT 1 cut(s) 776
CviAII CATG 4 cut(s) 277, 549, 844, 884
CviJI RGCY 4 cut(s) 68, 406, 460, 840
CviKI_1 RGCY 4 cut(s) 68, 406, 460, 840
DdeI CTNAG 3 cut(s) 209, 240, 771
DpnI GATC 8 cut(s) 84, 115, 180, 285, 324, 618, 726, 761
DpnII GATC 8 cut(s) 82, 113, 178, 283, 322, 616, 724, 759
Eam1104I CTCTTC 3 cut(s) 450, 570, 772
EarI CTCTTC 3 cut(s) 450, 570, 772
Eco105I TACGTA 2 cut(s) 347, 477
Eco31I GGTCTC 1 cut(s) 767
EcoRI GAATTC 1 cut(s) 374
EcoT22I ATGCAT 1 cut(s) 677
Esp3I CGTCTC 2 cut(s) 82, 357
FaeI CATG 4 cut(s) 280, 552, 847, 887
FatI CATG 4 cut(s) 276, 548, 843, 883
FbaI TGATCA 2 cut(s) 82, 322
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 407
FokI GGATG 3 cut(s) 203, 662, 889
Fsp4HI GCNGC 1 cut(s) 407
FspBI CTAG 2 cut(s) 288, 384
GluI GCNGC 1 cut(s) 407
HapII CCGG 2 cut(s) 185, 777
Hin1II CATG 4 cut(s) 280, 552, 847, 887
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 4 cut(s) 211, 606, 791, 880
HpaII CCGG 2 cut(s) 185, 777
HphI GGTGA 4 cut(s) 188, 434, 791, 839
Hpy166II GTNNAC 2 cut(s) 215, 933
Hpy188I TCNGA 6 cut(s) 82, 241, 283, 354, 772, 974
Hpy188III TCNNGA 4 cut(s) 185, 208, 656, 884
Hpy8I GTNNAC 2 cut(s) 215, 933
Hpy99I CGWCG 1 cut(s) 400
HpyCH4IV ACGT 3 cut(s) 346, 476, 520
HpyCH4V TGCA 6 cut(s) 42, 246, 270, 537, 675, 744
HpyF10VI GCNNNNNNNGC 1 cut(s) 504
HpyF3I CTNAG 3 cut(s) 209, 240, 771
HpySE526I ACGT 3 cut(s) 346, 476, 520
Hsp92II CATG 4 cut(s) 280, 552, 847, 887
Kpn2I TCCGGA 1 cut(s) 184
KpnI GGTACC 1 cut(s) 563
Ksp22I TGATCA 2 cut(s) 82, 322
Kzo9I GATC 8 cut(s) 82, 113, 178, 283, 322, 616, 724, 759
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 1 cut(s) 951
LpnPI CCDG 9 cut(s) 198, 221, 517, 612, 644, 674, 688, 754, 790
LweI GCATC 1 cut(s) 684
MaeI CTAG 2 cut(s) 288, 384
MaeII ACGT 3 cut(s) 346, 476, 520
MaeIII GTNAC 1 cut(s) 827
MalI GATC 8 cut(s) 84, 115, 180, 285, 324, 618, 726, 761
MboI GATC 8 cut(s) 82, 113, 178, 283, 322, 616, 724, 759
MboII GAAGA 6 cut(s) 173, 467, 557, 611, 754, 759
MfeI CAATTG 2 cut(s) 462, 795
MflI RGATCY 1 cut(s) 759
MluCI AATT 7 cut(s) 374, 462, 508, 717, 746, 795, 919
MlyI GAGTC 2 cut(s) 220, 889
MmeI TCCRAC 1 cut(s) 703
MnlI CCTC 5 cut(s) 181, 573, 579, 585, 588
Mph1103I ATGCAT 1 cut(s) 677
MroI TCCGGA 1 cut(s) 184
MseI TTAA 3 cut(s) 684, 716, 923
MslI CAYNNNNRTG 3 cut(s) 547, 553, 938
MspI CCGG 2 cut(s) 185, 777
MunI CAATTG 2 cut(s) 462, 795
MwoI GCNNNNNNNGC 1 cut(s) 504
NdeII GATC 8 cut(s) 82, 113, 178, 283, 322, 616, 724, 759
NlaIII CATG 4 cut(s) 280, 552, 847, 887
NlaIV GGNNCC 1 cut(s) 561
NmuCI GTSAC 1 cut(s) 827
NsiI ATGCAT 1 cut(s) 677
NspI RCATGY 1 cut(s) 552
NspV TTCGAA 1 cut(s) 423
PagI TCATGA 1 cut(s) 883
PciSI GCTCTTC 1 cut(s) 450
PfeI GAWTC 2 cut(s) 606, 791
PflMI CCANNNNNTGG 1 cut(s) 264
PinAI ACCGGT 1 cut(s) 776
PkrI GCNGC 1 cut(s) 408
PleI GAGTC 2 cut(s) 219, 888
PpsI GAGTC 2 cut(s) 219, 888
Ppu21I YACGTR 2 cut(s) 347, 477
PshBI ATTAAT 1 cut(s) 716
PspN4I GGNNCC 1 cut(s) 561
PsrI GAACNNNNNNTAC 2 cut(s) 839, 871
PsuI RGATCY 1 cut(s) 759
RseI CAYNNNNRTG 3 cut(s) 547, 553, 938
SalI GTCGAC 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 3 cut(s) 684, 716, 923
SatI GCNGC 1 cut(s) 407
Sau3AI GATC 8 cut(s) 82, 113, 178, 283, 322, 616, 724, 759
SchI GAGTC 2 cut(s) 220, 889
SetI ASST 8 cut(s) 70, 349, 475, 479, 523, 565, 701, 896
SfaNI GCATC 1 cut(s) 684
SfuI TTCGAA 1 cut(s) 423
SmiMI CAYNNNNRTG 3 cut(s) 547, 553, 938
SnaBI TACGTA 2 cut(s) 347, 477
Sse9I AATT 7 cut(s) 374, 462, 508, 717, 746, 795, 919
SsiI CCGC 1 cut(s) 407
SspI AATATT 1 cut(s) 153
SspMI CTAG 2 cut(s) 288, 384
TaiI ACGT 3 cut(s) 349, 479, 523
TaqI TCGA 3 cut(s) 98, 214, 423
TasI AATT 7 cut(s) 374, 462, 508, 717, 746, 795, 919
TatI WGTACW 3 cut(s) 11, 754, 855
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 2 cut(s) 606, 791
Tru1I TTAA 3 cut(s) 684, 716, 923
Tru9I TTAA 3 cut(s) 684, 716, 923
TscAI CASTG 1 cut(s) 606
TseFI GTSAC 1 cut(s) 827
Tsp45I GTSAC 1 cut(s) 827
TspDTI ATGAA 5 cut(s) 80, 173, 598, 860, 956
TspGWI ACGGA 2 cut(s) 346, 929
TspRI CASTG 1 cut(s) 606
Van91I CCANNNNNTGG 1 cut(s) 264
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 3 cut(s) 374, 746, 919
XceI RCATGY 1 cut(s) 552
XmiI GTMKAC 1 cut(s) 214
XspI CTAG 2 cut(s) 288, 384
Zsp2I ATGCAT 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.