RLG00000012543

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000216
Physical Location & Seq
Reverse (-)
19745117 .. 19747027
1911 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012543

Sequence Viewer

Length: 669 bp
ATGGCAAATAGCACAGCAGAATTATTTACGATTGATTCCAAGCAGACTCCTCTTCAGTTAAGAGCAATCGATTTTCGTCCCAGCAAGCTGGTTGTGATGTGGGATTTATCTGTGATTCCGACTATAGGTGCCGGATTCTACGATCGATTCCTTGAGTATGAAGCAGAACCTGCCTTCCCATTAAAGGTGGAGACGTTCTCTTCCGAGACTGCCTTTTATAATCCATACAATTACACCGATTGCCTCGGTGTCTGCCGGGGTTGTGTGAGGATGTGCCGGCTCTATACTTTGTCACGTTTCATTCTTTATGTGTGGGAGCTGAAAGAAGATAGCGATCGTCAGGTGGAAGGAGTTGGAGGCAAAATGATGAAATGGTGTTTAAAGGAGAGGGTCTTCCTTGACCAACTTGAATCGAACAATCGGATGTCTAATCGTTACCGCGCTCTGGCTTTGGACCCAAATGATGAAGACATACTGTACCTGCTACGGAAAACCATCAGCTCTGGTCCAGAATATCACACACACAGCGACATTGTTACGTGCAATATTCGTACAAAAACGGTAATTGACATCTCTCCAAAGTTGCCATTCTCTAATAGTTGGACATGCAGAGAGGAAGGCATTTCCATTTATGCTCCCATGGTTGCGATGGCCAACACCGGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

223

Amino Acids

25.5

Weight (kDa)

5.53

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
Acc36I ACCTGC 2 cut(s) 178, 489
AccB1I GGYRCC 1 cut(s) 128
AccII CGCG 1 cut(s) 441
AciI CCGC 1 cut(s) 439
AcoI YGGCCR 1 cut(s) 651
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 2 cut(s) 479, 553
AfiI CCNNNNNNNGG 3 cut(s) 125, 184, 445
AgeI ACCGGT 1 cut(s) 659
AgsI TTSAA 1 cut(s) 410
AloI GAACNNNNNNTCC 2 cut(s) 159, 191
AluBI AGCT 3 cut(s) 88, 319, 501
AluI AGCT 3 cut(s) 88, 319, 501
Alw26I GTCTC 2 cut(s) 185, 200
AlwNI CAGNNNCTG 1 cut(s) 170
AoxI GGCC 1 cut(s) 651
AsiGI ACCGGT 1 cut(s) 659
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 2 cut(s) 454, 506
AsuC2I CCSGG 1 cut(s) 257
AvaII GGWCC 2 cut(s) 454, 506
BalI TGGCCA 1 cut(s) 653
BanI GGYRCC 1 cut(s) 128
BbsI GAAGAC 2 cut(s) 385, 474
BccI CCATC 2 cut(s) 503, 643
BcnI CCSGG 1 cut(s) 257
BcoDI GTCTC 2 cut(s) 185, 200
BfmI CTRYAG 1 cut(s) 123
BfuAI ACCTGC 2 cut(s) 178, 489
Bme1390I CCNGG 1 cut(s) 257
Bme18I GGWCC 2 cut(s) 454, 506
BmgT120I GGNCC 2 cut(s) 454, 506
BmiI GGNNCC 3 cut(s) 130, 456, 664
BmrFI CCNGG 1 cut(s) 257
BpiI GAAGAC 2 cut(s) 385, 474
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 257
Bsa29I ATCGAT 2 cut(s) 69, 145
BsaAI YACGTR 1 cut(s) 540
BsaBI GATNNNNATC 1 cut(s) 333
BsaJI CCNNGG 3 cut(s) 244, 256, 639
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 184, 445
Bse118I RCCGGY 2 cut(s) 276, 659
Bse8I GATNNNNATC 1 cut(s) 333
BseCI ATCGAT 2 cut(s) 69, 145
BseDI CCNNGG 3 cut(s) 244, 256, 639
BseGI GGATG 2 cut(s) 276, 429
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 3 cut(s) 125, 184, 445
BseRI GAGGAG 1 cut(s) 39
BseYI CCCAGC 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 441
Bsh1285I CGRYCG 2 cut(s) 145, 337
BshFI GGCC 1 cut(s) 653
BshNI GGYRCC 1 cut(s) 128
BshTI ACCGGT 1 cut(s) 659
BshVI ATCGAT 2 cut(s) 69, 145
BsiEI CGRYCG 2 cut(s) 145, 337
BsiSI CCGG 4 cut(s) 132, 256, 277, 660
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 125, 184, 445
BsmAI GTCTC 2 cut(s) 185, 200
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 1 cut(s) 653
Bsp143I GATC 2 cut(s) 142, 334
Bsp19I CCATGG 1 cut(s) 639
BspACI CCGC 1 cut(s) 439
BspANI GGCC 1 cut(s) 653
BspDI ATCGAT 2 cut(s) 69, 145
BspFNI CGCG 1 cut(s) 441
BspLI GGNNCC 3 cut(s) 130, 456, 664
BspMI ACCTGC 2 cut(s) 178, 489
BspT107I GGYRCC 1 cut(s) 128
BsrFI RCCGGY 2 cut(s) 276, 659
BssAI RCCGGY 2 cut(s) 276, 659
BssECI CCNNGG 3 cut(s) 244, 256, 639
BssMI GATC 2 cut(s) 142, 334
BssT1I CCWWGG 1 cut(s) 639
Bst4CI ACNGT 2 cut(s) 477, 562
Bst6I CTCTTC 2 cut(s) 57, 205
BstAPI GCANNNNNTGC 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 540
BstC8I GCNNGC 2 cut(s) 86, 278
BstDSI CCRYGG 1 cut(s) 639
BstF5I GGATG 2 cut(s) 276, 429
BstFNI CGCG 1 cut(s) 441
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 2 cut(s) 145, 337
BstMAI GTCTC 2 cut(s) 185, 200
BstMBI GATC 2 cut(s) 142, 334
BstMCI CGRYCG 2 cut(s) 145, 337
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 609
BstSCI CCNGG 1 cut(s) 255
BstSFI CTRYAG 1 cut(s) 123
BstUI CGCG 1 cut(s) 441
BstV2I GAAGAC 2 cut(s) 385, 474
BstXI CCANNNNNNTGG 1 cut(s) 88
Bsu15I ATCGAT 2 cut(s) 69, 145
BsuRI GGCC 1 cut(s) 653
BsuTUI ATCGAT 2 cut(s) 69, 145
BtgI CCRYGG 1 cut(s) 639
BtgZI GCGATG 1 cut(s) 662
BtsCI GGATG 2 cut(s) 276, 429
BveI ACCTGC 2 cut(s) 178, 489
Cac8I GCNNGC 2 cut(s) 86, 278
CaiI CAGNNNCTG 1 cut(s) 170
CfoI GCGC 1 cut(s) 443
Cfr10I RCCGGY 2 cut(s) 276, 659
Cfr13I GGNCC 2 cut(s) 454, 506
ClaI ATCGAT 2 cut(s) 69, 145
Csp6I GTAC 2 cut(s) 478, 552
CspAI ACCGGT 1 cut(s) 659
CviAII CATG 2 cut(s) 606, 640
CviJI RGCY 6 cut(s) 88, 280, 319, 449, 501, 653
CviKI_1 RGCY 6 cut(s) 88, 280, 319, 449, 501, 653
CviQI GTAC 2 cut(s) 478, 552
DpnI GATC 2 cut(s) 144, 336
DpnII GATC 2 cut(s) 142, 334
DraI TTTAAA 1 cut(s) 381
EaeI YGGCCR 1 cut(s) 651
Eam1104I CTCTTC 2 cut(s) 57, 205
EarI CTCTTC 2 cut(s) 57, 205
Eco130I CCWWGG 1 cut(s) 639
Eco47I GGWCC 2 cut(s) 454, 506
Eco57I CTGAAG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 639
ErhI CCWWGG 1 cut(s) 639
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 2 cut(s) 609, 643
FaqI GGGAC 1 cut(s) 63
FatI CATG 2 cut(s) 605, 639
FokI GGATG 2 cut(s) 283, 436
GlaI GCGC 1 cut(s) 442
GsaI CCCAGC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 653
HapII CCGG 4 cut(s) 132, 256, 277, 660
HhaI GCGC 1 cut(s) 443
Hin1II CATG 2 cut(s) 609, 643
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HinfI GANTC 6 cut(s) 35, 46, 115, 135, 147, 410
HpaII CCGG 4 cut(s) 132, 256, 277, 660
Hpy188I TCNGA 3 cut(s) 120, 205, 423
Hpy188III TCNNGA 1 cut(s) 509
HpyAV CCTTC 3 cut(s) 184, 341, 611
HpyCH4III ACNGT 2 cut(s) 477, 562
HpyCH4IV ACGT 3 cut(s) 194, 295, 539
HpyCH4V TGCA 2 cut(s) 543, 609
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpySE526I ACGT 3 cut(s) 194, 295, 539
Hsp92II CATG 2 cut(s) 609, 643
HspAI GCGC 1 cut(s) 441
KroI GCCGGC 1 cut(s) 276
KroNI GCCGGC 1 cut(s) 278
Kzo9I GATC 2 cut(s) 142, 334
LmnI GCTCC 2 cut(s) 316, 640
MaeII ACGT 3 cut(s) 194, 295, 539
MaeIII GTNAC 3 cut(s) 291, 434, 535
MalI GATC 2 cut(s) 144, 336
MboI GATC 2 cut(s) 142, 334
MboII GAAGA 5 cut(s) 44, 192, 338, 385, 479
MlsI TGGCCA 1 cut(s) 653
MluCI AATT 3 cut(s) 20, 229, 564
MluNI TGGCCA 1 cut(s) 653
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 3 cut(s) 143, 334, 581
MnlI CCTC 6 cut(s) 60, 254, 261, 350, 381, 607
Mox20I TGGCCA 1 cut(s) 653
MroNI GCCGGC 1 cut(s) 276
MscI TGGCCA 1 cut(s) 653
MseI TTAA 3 cut(s) 59, 182, 380
Msp20I TGGCCA 1 cut(s) 653
MspI CCGG 4 cut(s) 132, 256, 277, 660
MspR9I CCNGG 1 cut(s) 257
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 170
NaeI GCCGGC 1 cut(s) 278
NciI CCSGG 1 cut(s) 257
NcoI CCATGG 1 cut(s) 639
NdeII GATC 2 cut(s) 142, 334
NgoMIV GCCGGC 1 cut(s) 276
NlaIII CATG 2 cut(s) 609, 643
NlaIV GGNNCC 3 cut(s) 130, 456, 664
NmuCI GTSAC 1 cut(s) 291
NspI RCATGY 1 cut(s) 609
PdiI GCCGGC 1 cut(s) 278
PfeI GAWTC 5 cut(s) 35, 115, 135, 147, 410
PinAI ACCGGT 1 cut(s) 659
Ple19I CGATCG 2 cut(s) 145, 337
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 540
PsiI TTATAA 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 80
PspN4I GGNNCC 3 cut(s) 130, 456, 664
PspPI GGNCC 2 cut(s) 454, 506
PstNI CAGNNNCTG 1 cut(s) 170
PvuI CGATCG 2 cut(s) 145, 337
RsaI GTAC 2 cut(s) 479, 553
RsaNI GTAC 2 cut(s) 478, 552
SaqAI TTAA 3 cut(s) 59, 182, 380
Sau3AI GATC 2 cut(s) 142, 334
Sau96I GGNCC 2 cut(s) 454, 506
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 257
SfcI CTRYAG 1 cut(s) 123
SinI GGWCC 2 cut(s) 454, 506
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 3 cut(s) 20, 229, 564
SsiI CCGC 1 cut(s) 439
SspI AATATT 1 cut(s) 547
StyD4I CCNGG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 2 cut(s) 477, 562
TaiI ACGT 3 cut(s) 197, 298, 542
TaqI TCGA 3 cut(s) 69, 145, 413
TasI AATT 3 cut(s) 20, 229, 564
TfiI GAWTC 5 cut(s) 35, 115, 135, 147, 410
Tru1I TTAA 3 cut(s) 59, 182, 380
Tru9I TTAA 3 cut(s) 59, 182, 380
TseFI GTSAC 1 cut(s) 291
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 4 cut(s) 174, 289, 383, 480
TspGWI ACGGA 1 cut(s) 502
VpaK11BI GGWCC 2 cut(s) 454, 506
XceI RCATGY 1 cut(s) 609
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.