Rmu_sc0000946.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000946.1
OG0000216
Physical Location & Seq
Forward (+)
51688 .. 52371
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000946.1_g000012.1.cds

Sequence Viewer

Length: 684 bp
atgagaggtggtgatagtaccaaaagtatctactctagaaaatcccagtcgacctcgggagcagtaccggcctctgagctgatgaatattgaaattgatgatctcccggatgttgtgttggttgaaattctttgtccgcttccatgctataagtttgtttcaaaatgcaagtgcgtgtccaaacgttggtgcaatgtcatgtccggtccttattttcttggccgctttctacgtctccagagtgatcgtgagcaaacaccaatagttcgtactctgataaccaacagaggggaggagttccttgctagaatgtcatcgtccaccaagccgctagctctgttgtttgacagactcatgagttctcaccatttggaacaagagccgctagtggtagctacgtgtaatgacttagttttgtgctgttcaaccggggtctattatcaacgtgattactacatctgcaatccgtgcacaattcagtgggatcctgttcctccccctcctcgagtttaccggtatacaccagtgggattcatatgtgatcttccctactatagctgcacgaaagatgatcagggaggaagtttcattcaggttaatgctgagtataggtgcaggatagtgagattaattcttcgtaagagatctgtctgtaaactcaaaagtgcaaatcttctcctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

227

Amino Acids

25.87

Weight (kDa)

8.82

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 186
AccI GTMKAC 2 cut(s) 50, 518
AciI CCGC 4 cut(s) 137, 223, 329, 383
AclI AACGTT 1 cut(s) 184
AclWI GGATC 2 cut(s) 479, 492
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 1 cut(s) 126
AfaI GTAC 3 cut(s) 19, 66, 271
AfiI CCNNNNNNNGG 2 cut(s) 186, 288
AflIII ACRYGT 1 cut(s) 398
AgeI ACCGGT 1 cut(s) 513
AgsI TTSAA 4 cut(s) 92, 125, 162, 426
AluBI AGCT 4 cut(s) 79, 335, 395, 558
AluI AGCT 4 cut(s) 79, 335, 395, 558
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 1 cut(s) 239
Alw44I GTGCAC 1 cut(s) 469
AlwI GGATC 2 cut(s) 479, 492
Ama87I CYCGRG 2 cut(s) 55, 504
AoxI GGCC 2 cut(s) 69, 220
ApaLI GTGCAC 1 cut(s) 469
ApeKI GCWGC 1 cut(s) 558
ApoI RAATTY 1 cut(s) 126
AseI ATTAAT 1 cut(s) 629
AsiGI ACCGGT 1 cut(s) 513
AspS9I GGNCC 1 cut(s) 206
AsuC2I CCSGG 2 cut(s) 107, 430
AsuHPI GGTGA 2 cut(s) 23, 356
AsuNHI GCTAGC 1 cut(s) 331
AvaI CYCGRG 2 cut(s) 55, 504
AvaII GGWCC 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 473
BamHI GGATCC 1 cut(s) 484
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 1 cut(s) 545
BclI TGATCA 1 cut(s) 571
BcnI CCSGG 2 cut(s) 107, 430
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 4 cut(s) 36, 306, 332, 386
BfmI CTRYAG 1 cut(s) 553
BglII AGATCT 1 cut(s) 644
BisI GCNGC 4 cut(s) 223, 329, 383, 559
BlsI GCNGC 4 cut(s) 224, 330, 384, 560
Bme1390I CCNGG 2 cut(s) 107, 430
Bme18I GGWCC 1 cut(s) 206
BmeT110I CYCGRG 2 cut(s) 55, 504
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 486
BmrFI CCNGG 2 cut(s) 107, 430
BmrI ACTGGG 1 cut(s) 40
BmtI GCTAGC 1 cut(s) 335
BmuI ACTGGG 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 221
BpuMI CCSGG 2 cut(s) 107, 430
BsaAI YACGTR 1 cut(s) 399
BsaJI CCNNGG 2 cut(s) 54, 429
BsaWI WCCGGW 2 cut(s) 203, 513
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 288
Bse118I RCCGGY 2 cut(s) 67, 513
Bse1I ACTGG 2 cut(s) 46, 524
Bse3DI GCAATG 1 cut(s) 199
BseDI CCNNGG 2 cut(s) 54, 429
BseGI GGATG 1 cut(s) 115
BseLI CCNNNNNNNGG 2 cut(s) 186, 288
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 2 cut(s) 66, 594
BseNI ACTGG 2 cut(s) 46, 524
BseRI GAGGAG 3 cut(s) 308, 492, 668
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 1 cut(s) 545
BsgI GTGCAG 2 cut(s) 544, 634
BshFI GGCC 2 cut(s) 71, 222
BshTI ACCGGT 1 cut(s) 513
BsiHKAI GWGCWC 1 cut(s) 473
BsiHKCI CYCGRG 2 cut(s) 55, 504
BsiSI CCGG 5 cut(s) 68, 107, 204, 429, 514
BslI CCNNNNNNNGG 2 cut(s) 186, 288
BsmAI GTCTC 1 cut(s) 239
BsmBI CGTCTC 1 cut(s) 239
BsnI GGCC 2 cut(s) 71, 222
BsoBI CYCGRG 2 cut(s) 55, 504
Bsp1286I GDGCHC 1 cut(s) 473
Bsp143I GATC 6 cut(s) 100, 244, 484, 541, 571, 644
BspACI CCGC 4 cut(s) 137, 223, 329, 383
BspANI GGCC 2 cut(s) 71, 222
BspCNI CTCAG 2 cut(s) 67, 595
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 486
BspOI GCTAGC 1 cut(s) 335
BspPI GGATC 2 cut(s) 479, 492
BsrDI GCAATG 1 cut(s) 199
BsrFI RCCGGY 2 cut(s) 67, 513
BsrI ACTGG 2 cut(s) 46, 524
BssAI RCCGGY 2 cut(s) 67, 513
BssECI CCNNGG 2 cut(s) 54, 429
BssMI GATC 6 cut(s) 100, 244, 484, 541, 571, 644
BssNAI GTATAC 1 cut(s) 519
Bst1107I GTATAC 1 cut(s) 519
BstAPI GCANNNNNTGC 1 cut(s) 468
BstBAI YACGTR 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 3 cut(s) 75, 409, 603
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 6 cut(s) 103, 247, 487, 544, 574, 647
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 6 cut(s) 100, 244, 484, 541, 571, 644
BstMWI GCNNNNNNNGC 2 cut(s) 68, 468
BstSCI CCNGG 2 cut(s) 105, 428
BstSFI CTRYAG 1 cut(s) 553
BstSLI GKGCMC 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 545
BstX2I RGATCY 2 cut(s) 484, 644
BstYI RGATCY 2 cut(s) 484, 644
BstZ17I GTATAC 1 cut(s) 519
BsuRI GGCC 2 cut(s) 71, 222
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 485, 531
Cac8I GCNNGC 1 cut(s) 333
CciI TCATGA 1 cut(s) 354
Cfr10I RCCGGY 2 cut(s) 67, 513
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 18, 65, 270
CspAI ACCGGT 1 cut(s) 513
CviAII CATG 3 cut(s) 144, 199, 355
CviJI RGCY 8 cut(s) 71, 79, 222, 328, 335, 382, 395, 558
CviKI_1 RGCY 8 cut(s) 71, 79, 222, 328, 335, 382, 395, 558
CviQI GTAC 3 cut(s) 18, 65, 270
DdeI CTNAG 3 cut(s) 75, 409, 603
DpnI GATC 6 cut(s) 102, 246, 486, 543, 573, 646
DpnII GATC 6 cut(s) 100, 244, 484, 541, 571, 644
EaeI YGGCCR 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 206
Eco88I CYCGRG 2 cut(s) 55, 504
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 3 cut(s) 147, 202, 358
FaiI YATR 9 cut(s) 145, 150, 200, 356, 519, 536, 538, 555, 609
FatI CATG 3 cut(s) 143, 198, 354
FauNDI CATATG 1 cut(s) 536
FbaI TGATCA 1 cut(s) 571
FblI GTMKAC 2 cut(s) 50, 518
Fnu4HI GCNGC 4 cut(s) 223, 329, 383, 559
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 4 cut(s) 223, 329, 383, 559
FspBI CTAG 4 cut(s) 36, 306, 332, 386
GluI GCNGC 4 cut(s) 223, 329, 383, 559
GsuI CTGGAG 1 cut(s) 221
HaeIII GGCC 2 cut(s) 71, 222
HapII CCGG 5 cut(s) 68, 107, 204, 429, 514
Hin1II CATG 3 cut(s) 147, 202, 358
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 2 cut(s) 351, 531
HpaII CCGG 5 cut(s) 68, 107, 204, 429, 514
HphI GGTGA 2 cut(s) 23, 356
Hpy166II GTNNAC 6 cut(s) 51, 321, 471, 511, 519, 656
Hpy188I TCNGA 3 cut(s) 76, 276, 683
Hpy188III TCNNGA 5 cut(s) 36, 57, 238, 248, 355
Hpy8I GTNNAC 6 cut(s) 51, 321, 471, 511, 519, 656
HpyCH4IV ACGT 4 cut(s) 184, 232, 398, 445
HpyCH4V TGCA 7 cut(s) 168, 192, 462, 471, 561, 615, 668
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 468
HpyF3I CTNAG 3 cut(s) 75, 409, 603
HpySE526I ACGT 4 cut(s) 184, 232, 398, 445
Hsp92II CATG 3 cut(s) 147, 202, 358
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 6 cut(s) 100, 244, 484, 541, 571, 644
LmnI GCTCC 1 cut(s) 59
Lsp1109I GCAGC 1 cut(s) 545
MaeI CTAG 4 cut(s) 36, 306, 332, 386
MaeII ACGT 4 cut(s) 184, 232, 398, 445
MalI GATC 6 cut(s) 102, 246, 486, 543, 573, 646
MboI GATC 6 cut(s) 100, 244, 484, 541, 571, 644
MboII GAAGA 3 cut(s) 536, 626, 665
MflI RGATCY 2 cut(s) 484, 644
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 4 cut(s) 93, 126, 474, 630
MlyI GAGTC 1 cut(s) 345
MnlI CCTC 8 cut(s) 64, 82, 281, 286, 504, 510, 513, 572
MseI TTAA 2 cut(s) 597, 629
MspI CCGG 5 cut(s) 68, 107, 204, 429, 514
MspR9I CCNGG 2 cut(s) 107, 430
MwoI GCNNNNNNNGC 2 cut(s) 68, 468
NciI CCSGG 2 cut(s) 107, 430
NdeI CATATG 1 cut(s) 536
NdeII GATC 6 cut(s) 100, 244, 484, 541, 571, 644
NheI GCTAGC 1 cut(s) 331
NlaIII CATG 3 cut(s) 147, 202, 358
NlaIV GGNNCC 1 cut(s) 486
PaeR7I CTCGAG 1 cut(s) 504
PagI TCATGA 1 cut(s) 354
PfeI GAWTC 1 cut(s) 531
PflMI CCANNNNNTGG 1 cut(s) 186
PfoI TCCNGGA 1 cut(s) 105
PinAI ACCGGT 1 cut(s) 513
PkrI GCNGC 4 cut(s) 224, 330, 384, 560
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
Ppu21I YACGTR 1 cut(s) 399
PshBI ATTAAT 1 cut(s) 629
Psp1406I AACGTT 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 486
PspPI GGNCC 1 cut(s) 206
PspXI VCTCGAGB 1 cut(s) 504
PsuI RGATCY 2 cut(s) 484, 644
RsaI GTAC 3 cut(s) 19, 66, 271
RsaNI GTAC 3 cut(s) 18, 65, 270
SalI GTCGAC 1 cut(s) 49
SaqAI TTAA 2 cut(s) 597, 629
SatI GCNGC 4 cut(s) 223, 329, 383, 559
Sau3AI GATC 6 cut(s) 100, 244, 484, 541, 571, 644
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 2 cut(s) 107, 430
SduI GDGCHC 1 cut(s) 473
SfcI CTRYAG 1 cut(s) 553
Sfr274I CTCGAG 1 cut(s) 504
SinI GGWCC 1 cut(s) 206
SlaI CTCGAG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 504
SmoI CTYRAG 1 cut(s) 504
Sse9I AATT 4 cut(s) 93, 126, 474, 630
SsiI CCGC 4 cut(s) 137, 223, 329, 383
SspI AATATT 1 cut(s) 88
SspMI CTAG 4 cut(s) 36, 306, 332, 386
StyD4I CCNGG 2 cut(s) 105, 428
TaiI ACGT 4 cut(s) 187, 235, 401, 448
TaqI TCGA 2 cut(s) 50, 505
TasI AATT 4 cut(s) 93, 126, 474, 630
TauI GCSGC 3 cut(s) 225, 331, 385
TfiI GAWTC 1 cut(s) 531
Tru1I TTAA 2 cut(s) 597, 629
Tru9I TTAA 2 cut(s) 597, 629
TscAI CASTG 2 cut(s) 485, 531
TseI GCWGC 1 cut(s) 558
TspDTI ATGAA 3 cut(s) 98, 523, 577
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 2 cut(s) 485, 531
Van91I CCANNNNNTGG 1 cut(s) 186
VneI GTGCAC 1 cut(s) 469
VpaK11BI GGWCC 1 cut(s) 206
VspI ATTAAT 1 cut(s) 629
XapI RAATTY 1 cut(s) 126
XbaI TCTAGA 1 cut(s) 35
XhoI CTCGAG 1 cut(s) 504
XmiI GTMKAC 2 cut(s) 50, 518
XspI CTAG 4 cut(s) 36, 306, 332, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.