Rh2AG577600

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
80729518 .. 80729867
350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG577600.1

Sequence Viewer

Length: 294 bp
ATGATCGATTTTGATCTTAACCTCCCTCCTGCTCCAGAACAAGGAGGAGCTGCTGTGGATGTGAGATCAACAGCACCAAAATTGATGAATAATAGTATTGATGATCTTCCTGATGGTGAATTGCTTGAAATCCTTTATCGACTTGCTTGCTATAAGTTTGTTGCTCAATGCAAGCGTGTCTCCAAGCGTTGGTGCAATCTCATGTCCGAACCTTCTTTTATTGGCGACTTTTGGAGTGGAATTCATCGGCAGATTGTCATCTTCCACCAAGCCGCTAACTCCATTGTTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

10.95

Weight (kDa)

6.04

Isoelectric Point (pI)

55.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 189
AciI CCGC 1 cut(s) 273
AcsI RAATTY 1 cut(s) 240
AfiI CCNNNNNNNGG 2 cut(s) 41, 189
AgsI TTSAA 1 cut(s) 128
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 128
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 107
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BcoDI GTCTC 1 cut(s) 184
BisI GCNGC 2 cut(s) 51, 273
BlsI GCNGC 2 cut(s) 52, 274
BpmI CTGGAG 1 cut(s) 18
Bsa29I ATCGAT 1 cut(s) 6
BsaBI GATNNNNATC 2 cut(s) 12, 257
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 189
Bse8I GATNNNNATC 2 cut(s) 12, 257
BseCI ATCGAT 1 cut(s) 6
BseGI GGATG 1 cut(s) 64
BseJI GATNNNNATC 2 cut(s) 12, 257
BseLI CCNNNNNNNGG 2 cut(s) 41, 189
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 37
BshVI ATCGAT 1 cut(s) 6
BslI CCNNNNNNNGG 2 cut(s) 41, 189
BsmAI GTCTC 1 cut(s) 184
Bsp143I GATC 4 cut(s) 3, 13, 65, 103
BspACI CCGC 1 cut(s) 273
BspDI ATCGAT 1 cut(s) 6
BssMI GATC 4 cut(s) 3, 13, 65, 103
BstC8I GCNNGC 2 cut(s) 148, 173
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 4 cut(s) 6, 16, 68, 106
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 4 cut(s) 3, 13, 65, 103
BstV1I GCAGC 1 cut(s) 37
Bsu15I ATCGAT 1 cut(s) 6
BsuTUI ATCGAT 1 cut(s) 6
BtsCI GGATG 1 cut(s) 64
Cac8I GCNNGC 2 cut(s) 148, 173
ClaI ATCGAT 1 cut(s) 6
CviAII CATG 1 cut(s) 202
CviJI RGCY 2 cut(s) 50, 272
CviKI_1 RGCY 2 cut(s) 50, 272
DpnI GATC 4 cut(s) 5, 15, 67, 105
DpnII GATC 4 cut(s) 3, 13, 65, 103
EcoRI GAATTC 1 cut(s) 240
FaeI CATG 1 cut(s) 205
FaiI YATR 2 cut(s) 153, 203
FatI CATG 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 51, 273
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 51, 273
GluI GCNGC 2 cut(s) 51, 273
GsuI CTGGAG 1 cut(s) 18
Hin1II CATG 1 cut(s) 205
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 35, 110
HpyAV CCTTC 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 171, 195
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 4 cut(s) 3, 13, 65, 103
LmnI GCTCC 2 cut(s) 37, 47
LpnPI CCDG 3 cut(s) 42, 48, 123
Lsp1109I GCAGC 1 cut(s) 37
MalI GATC 4 cut(s) 5, 15, 67, 105
MboI GATC 4 cut(s) 3, 13, 65, 103
MboII GAAGA 2 cut(s) 98, 253
MluCI AATT 3 cut(s) 80, 119, 240
MnlI CCTC 3 cut(s) 32, 36, 38
MseI TTAA 1 cut(s) 18
NdeII GATC 4 cut(s) 3, 13, 65, 103
NlaIII CATG 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 2 cut(s) 52, 274
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 2 cut(s) 51, 273
Sau3AI GATC 4 cut(s) 3, 13, 65, 103
SetI ASST 3 cut(s) 24, 52, 214
Sse9I AATT 3 cut(s) 80, 119, 240
SsiI CCGC 1 cut(s) 273
TaqI TCGA 3 cut(s) 6, 139, 289
TasI AATT 3 cut(s) 80, 119, 240
TauI GCSGC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 2 cut(s) 101, 233
Van91I CCANNNNNTGG 1 cut(s) 189
XapI RAATTY 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.