Rmu_sc0030722.1_g000001

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030722.1
OG0000216
Physical Location & Seq
Forward (+)
649 .. 1968
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030722.1_g000001.1.cds

Sequence Viewer

Length: 1320 bp
atgagtggtgaaggttacactactggtacacatgtaagtataccggtagatgatggtatacgtcaattgaaaagatgcaaacgattaccagcaagagcatcatcaaaattcactgatactagtatcaatgatctccctgatcacctgttggttgaagtcctatgtcgacttcctgacaataaaatctgcgtgcaatgcacatatgtgtgcagacgttggtgctctctcatctctgatccttatttgattggtcgctttctttggctccaaagggatttagggtcgccaataattcgtactttgataaaccacaatgcagaggagttccctactacagatgtgtttcaaagactcaggagtttcctccgtctgaaagaagatccatgtgtactagcgacatcaaatgacttggttttgtgctgtgcaagcaaggatgatcaacatgattactacatttgcaatccatgcaccatgcaactggttactcttcctccaatccctgcatgccacgagtttgtgccagtgggattcatatgcgagccctactataattatgaagaggaaggtggggatcatcgaaaagaacaaaagatcaatattaatggtgattataggtgcaaggttgtgagagtaattccttcaaaaataacttcttttgacattaccattcaagtcttctcttctgagatcggggaatggagagagtcagttgtatcatctcctacagacctttcctcgtatatttttgatcggaatattagctttggtaacaatggaatgatatattgggggactcttgatggtgatctcattgggttgggcccctttgtgaacaacaacaatagcagttctagtgatcagtatcagtgtcgtttgattgaatttgacagtattgtgaaggagaatttcacattggatttcgtaggtgtgtaccaaggatttctgcgcatgtgcgactacaactttgacagttgttggttgcttgttttggagctgtctgaagaagaacatgagcagctggttgtcaatggacttggaaaatgtggtttggaacatgggaaacgttattcacttcccccaaaaatgattcctggtgatccagatgggaatgttgaattgctaacttttgacccaaataatggtgatatcctttatctacgcataaatggagaaatcatcaagtgcaacattcgtacaggaaagtggtcaaagatggttgggacgaatatgctaactgatttagacttcttcccactagtgctcccgtggtggcctacaccagttccgagactaccagattatcagcatgggcagatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

439

Amino Acids

50.11

Weight (kDa)

5.04

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 947
AccB7I CCANNNNNTGG 1 cut(s) 1139
AccI GTMKAC 3 cut(s) 40, 58, 166
AclI AACGTT 1 cut(s) 1063
AclWI GGATC 4 cut(s) 230, 374, 579, 1091
AcsI RAATTY 3 cut(s) 107, 881, 904
AcuI CTGAAG 1 cut(s) 1020
AfaI GTAC 5 cut(s) 28, 298, 390, 932, 1195
AfiI CCNNNNNNNGG 1 cut(s) 1139
AflIII ACRYGT 1 cut(s) 31
AgeI ACCGGT 1 cut(s) 43
AgsI TTSAA 7 cut(s) 70, 155, 347, 642, 671, 881, 1115
AhlI ACTAGT 2 cut(s) 119, 1255
AjnI CCWGG 1 cut(s) 1090
AjuI GAANNNNNNNTTGG 4 cut(s) 769, 801, 896, 928
AleI CACNNNNGTG 1 cut(s) 203
AluBI AGCT 3 cut(s) 762, 994, 1018
AluI AGCT 3 cut(s) 762, 994, 1018
Alw21I GWGCWC 2 cut(s) 224, 1263
Alw26I GTCTC 1 cut(s) 1282
AlwI GGATC 4 cut(s) 230, 374, 579, 1091
AoxI GGCC 2 cut(s) 820, 1271
ApaI GGGCCC 1 cut(s) 824
ApeKI GCWGC 1 cut(s) 1015
ApoI RAATTY 3 cut(s) 107, 881, 904
ArsI GACNNNNNNTTYG 2 cut(s) 947, 979
AseI ATTAAT 1 cut(s) 600
AsiGI ACCGGT 1 cut(s) 43
AspLEI GCGC 1 cut(s) 948
AspS9I GGNCC 2 cut(s) 820, 821
AsuHPI GGTGA 6 cut(s) 20, 134, 617, 815, 1106, 1154
BaeGI GKGCMC 1 cut(s) 824
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BanII GRGCYC 2 cut(s) 543, 824
BauI CACGAG 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 667
Bbv12I GWGCWC 2 cut(s) 224, 1263
BbvI GCAGC 1 cut(s) 1027
BccI CCATC 4 cut(s) 47, 794, 1097, 1207
BciT130I CCWGG 1 cut(s) 1092
BclI TGATCA 3 cut(s) 139, 436, 856
BcoDI GTCTC 1 cut(s) 1282
BcuI ACTAGT 2 cut(s) 119, 1255
BfaI CTAG 4 cut(s) 120, 392, 852, 1256
BfmI CTRYAG 2 cut(s) 333, 723
BisI GCNGC 1 cut(s) 1016
BlsI GCNGC 1 cut(s) 1017
Bme1390I CCNGG 1 cut(s) 1092
BmgT120I GGNCC 2 cut(s) 820, 821
BmiI GGNNCC 3 cut(s) 266, 822, 823
BmrFI CCNGG 1 cut(s) 1092
BmsI GCATC 2 cut(s) 65, 107
BpiI GAAGAC 1 cut(s) 667
BsaBI GATNNNNATC 2 cut(s) 804, 861
BsaJI CCNNGG 2 cut(s) 934, 1265
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 4 cut(s) 475, 505, 1245, 1275
Bsc4I CCNNNNNNNGG 1 cut(s) 1139
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 4 cut(s) 28, 483, 521, 1280
Bse3DI GCAATG 1 cut(s) 200
Bse8I GATNNNNATC 2 cut(s) 804, 861
BseBI CCWGG 1 cut(s) 1092
BseDI CCNNGG 2 cut(s) 934, 1265
BseGI GGATG 1 cut(s) 439
BseJI GATNNNNATC 2 cut(s) 804, 861
BseLI CCNNNNNNNGG 1 cut(s) 1139
BseMI GCAATG 1 cut(s) 200
BseMII CTCAG 2 cut(s) 367, 675
BseNI ACTGG 4 cut(s) 28, 483, 521, 1280
BseRI GAGGAG 1 cut(s) 335
BseSI GKGCMC 1 cut(s) 824
BseXI GCAGC 1 cut(s) 1027
BsgI GTGCAG 1 cut(s) 229
BshFI GGCC 2 cut(s) 822, 1273
BshTI ACCGGT 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 224, 1263
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 2 cut(s) 805, 1234
BslI CCNNNNNNNGG 1 cut(s) 1139
BsmAI GTCTC 1 cut(s) 1282
BsmFI GGGAC 2 cut(s) 805, 1234
BsnI GGCC 2 cut(s) 822, 1273
Bsp120I GGGCCC 1 cut(s) 820
Bsp1286I GDGCHC 4 cut(s) 224, 543, 824, 1263
BspANI GGCC 2 cut(s) 822, 1273
BspCNI CTCAG 2 cut(s) 366, 676
BspLI GGNNCC 3 cut(s) 266, 822, 823
BspPI GGATC 4 cut(s) 230, 374, 579, 1091
BsrDI GCAATG 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 4 cut(s) 28, 483, 521, 1280
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 934, 1265
BssNAI GTATAC 2 cut(s) 41, 59
BssSI CACGAG 1 cut(s) 509
BssT1I CCWWGG 1 cut(s) 934
Bst1107I GTATAC 2 cut(s) 41, 59
Bst2BI CACGAG 1 cut(s) 509
Bst2UI CCWGG 1 cut(s) 1092
Bst4CI ACNGT 2 cut(s) 890, 971
Bst6I CTCTTC 3 cut(s) 492, 552, 685
BstAPI GCANNNNNTGC 1 cut(s) 465
BstC8I GCNNGC 4 cut(s) 191, 427, 505, 539
BstDEI CTNAG 2 cut(s) 353, 684
BstDSI CCRYGG 1 cut(s) 1265
BstF5I GGATG 1 cut(s) 439
BstHHI GCGC 1 cut(s) 948
BstMAI GTCTC 1 cut(s) 1282
BstMWI GCNNNNNNNGC 3 cut(s) 195, 426, 465
BstNI CCWGG 1 cut(s) 1092
BstNSI RCATGY 3 cut(s) 35, 507, 952
BstSCI CCNGG 1 cut(s) 1090
BstSFI CTRYAG 2 cut(s) 333, 723
BstSLI GKGCMC 1 cut(s) 824
BstV1I GCAGC 1 cut(s) 1027
BstV2I GAAGAC 1 cut(s) 667
BstX2I RGATCY 1 cut(s) 379
BstXI CCANNNNNNTGG 1 cut(s) 478
BstYI RGATCY 1 cut(s) 379
BstZ17I GTATAC 2 cut(s) 41, 59
BsuRI GGCC 2 cut(s) 822, 1273
BtgI CCRYGG 1 cut(s) 1265
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 3 cut(s) 111, 528, 872
Cac8I GCNNGC 4 cut(s) 191, 427, 505, 539
CfoI GCGC 1 cut(s) 948
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 820, 821
Csp6I GTAC 5 cut(s) 27, 297, 389, 931, 1194
CspAI ACCGGT 1 cut(s) 43
CviJI RGCY 7 cut(s) 265, 541, 762, 822, 994, 1018, 1273
CviKI_1 RGCY 7 cut(s) 265, 541, 762, 822, 994, 1018, 1273
CviQI GTAC 5 cut(s) 27, 297, 389, 931, 1194
DdeI CTNAG 2 cut(s) 353, 684
Eam1104I CTCTTC 3 cut(s) 492, 552, 685
EarI CTCTTC 3 cut(s) 492, 552, 685
Eco130I CCWWGG 1 cut(s) 934
Eco24I GRGCYC 2 cut(s) 543, 824
Eco32I GATATC 1 cut(s) 1147
Eco57I CTGAAG 1 cut(s) 1020
EcoO109I RGGNCCY 1 cut(s) 821
EcoRII CCWGG 1 cut(s) 1090
EcoRV GATATC 1 cut(s) 1147
EcoT14I CCWWGG 1 cut(s) 934
EcoT38I GRGCYC 2 cut(s) 543, 824
ErhI CCWWGG 1 cut(s) 934
FaqI GGGAC 2 cut(s) 805, 1234
FauNDI CATATG 2 cut(s) 202, 533
FbaI TGATCA 3 cut(s) 139, 436, 856
FblI GTMKAC 3 cut(s) 40, 58, 166
Fnu4HI GCNGC 1 cut(s) 1016
FokI GGATG 1 cut(s) 446
FriOI GRGCYC 2 cut(s) 543, 824
Fsp4HI GCNGC 1 cut(s) 1016
FspBI CTAG 4 cut(s) 120, 392, 852, 1256
FspI TGCGCA 1 cut(s) 947
GlaI GCGC 1 cut(s) 947
GluI GCNGC 1 cut(s) 1016
HaeIII GGCC 2 cut(s) 822, 1273
HapII CCGG 1 cut(s) 44
HhaI GCGC 1 cut(s) 948
Hin6I GCGC 1 cut(s) 946
HinP1I GCGC 1 cut(s) 946
HincII GTYRAC 1 cut(s) 167
HindII GTYRAC 1 cut(s) 167
HinfI GANTC 5 cut(s) 351, 528, 704, 793, 1087
HpaII CCGG 1 cut(s) 44
HphI GGTGA 6 cut(s) 20, 134, 617, 815, 1106, 1154
Hpy166II GTNNAC 7 cut(s) 29, 41, 59, 167, 389, 832, 931
Hpy188I TCNGA 6 cut(s) 235, 372, 685, 753, 1000, 1287
Hpy188III TCNNGA 4 cut(s) 173, 355, 797, 1100
Hpy8I GTNNAC 7 cut(s) 29, 41, 59, 167, 389, 832, 931
HpyAV CCTTC 4 cut(s) 5, 557, 648, 892
HpyCH4III ACNGT 2 cut(s) 890, 971
HpyCH4IV ACGT 3 cut(s) 61, 214, 1063
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 426, 465
HpyF3I CTNAG 2 cut(s) 353, 684
HpySE526I ACGT 3 cut(s) 61, 214, 1063
HspAI GCGC 1 cut(s) 946
Ksp22I TGATCA 3 cut(s) 139, 436, 856
LmnI GCTCC 3 cut(s) 270, 991, 1266
Lsp1109I GCAGC 1 cut(s) 1027
LweI GCATC 2 cut(s) 65, 107
MaeI CTAG 4 cut(s) 120, 392, 852, 1256
MaeII ACGT 3 cut(s) 61, 214, 1063
MaeIII GTNAC 3 cut(s) 14, 481, 767
MboII GAAGA 8 cut(s) 389, 479, 569, 667, 672, 1013, 1016, 1240
MfeI CAATTG 1 cut(s) 65
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 4 cut(s) 224, 543, 824, 1263
MluCI AATT 8 cut(s) 65, 107, 291, 550, 633, 881, 904, 1115
MlyI GAGTC 3 cut(s) 345, 713, 787
MnlI CCTC 5 cut(s) 313, 374, 501, 553, 745
MseI TTAA 1 cut(s) 600
MslI CAYNNNNRTG 2 cut(s) 203, 205
MspA1I CMGCKG 1 cut(s) 1018
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 1092
MunI CAATTG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 1092
MwoI GCNNNNNNNGC 3 cut(s) 195, 426, 465
NdeI CATATG 2 cut(s) 202, 533
NlaIV GGNNCC 3 cut(s) 266, 822, 823
NsbI TGCGCA 1 cut(s) 947
NspI RCATGY 3 cut(s) 35, 507, 952
OliI CACNNNNGTG 1 cut(s) 203
PaeI GCATGC 1 cut(s) 507
PciI ACATGT 1 cut(s) 31
PfeI GAWTC 2 cut(s) 528, 1087
PflMI CCANNNNNTGG 1 cut(s) 1139
PinAI ACCGGT 1 cut(s) 43
PkrI GCNGC 1 cut(s) 1017
PleI GAGTC 3 cut(s) 345, 712, 787
PpsI GAGTC 3 cut(s) 345, 712, 787
PscI ACATGT 1 cut(s) 31
PshBI ATTAAT 1 cut(s) 600
Psp1406I AACGTT 1 cut(s) 1063
Psp6I CCWGG 1 cut(s) 1090
PspGI CCWGG 1 cut(s) 1090
PspN4I GGNNCC 3 cut(s) 266, 822, 823
PspOMI GGGCCC 1 cut(s) 820
PspPI GGNCC 2 cut(s) 820, 821
PsuI RGATCY 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 1018
RsaI GTAC 5 cut(s) 28, 298, 390, 932, 1195
RsaNI GTAC 5 cut(s) 27, 297, 389, 931, 1194
RseI CAYNNNNRTG 2 cut(s) 203, 205
SalI GTCGAC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 600
SatI GCNGC 1 cut(s) 1016
Sau96I GGNCC 2 cut(s) 820, 821
SchI GAGTC 3 cut(s) 345, 713, 787
ScrFI CCNGG 1 cut(s) 1092
SduI GDGCHC 4 cut(s) 224, 543, 824, 1263
SfaNI GCATC 2 cut(s) 65, 107
SfcI CTRYAG 2 cut(s) 333, 723
SmiMI CAYNNNNRTG 2 cut(s) 203, 205
SpeI ACTAGT 2 cut(s) 119, 1255
SphI GCATGC 1 cut(s) 507
Sse9I AATT 8 cut(s) 65, 107, 291, 550, 633, 881, 904, 1115
SspI AATATT 2 cut(s) 598, 757
SspMI CTAG 4 cut(s) 120, 392, 852, 1256
StyD4I CCNGG 1 cut(s) 1090
StyI CCWWGG 1 cut(s) 934
TaaI ACNGT 2 cut(s) 890, 971
TaiI ACGT 3 cut(s) 64, 217, 1066
TaqI TCGA 2 cut(s) 166, 577
TasI AATT 8 cut(s) 65, 107, 291, 550, 633, 881, 904, 1115
TatI WGTACW 1 cut(s) 388
TfiI GAWTC 2 cut(s) 528, 1087
Tru1I TTAA 1 cut(s) 600
Tru9I TTAA 1 cut(s) 600
TscAI CASTG 3 cut(s) 118, 528, 872
TseI GCWGC 1 cut(s) 1015
TspDTI ATGAA 2 cut(s) 520, 570
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 3 cut(s) 118, 528, 872
Van91I CCANNNNNTGG 1 cut(s) 1139
VspI ATTAAT 1 cut(s) 600
XapI RAATTY 3 cut(s) 107, 881, 904
XceI RCATGY 3 cut(s) 35, 507, 952
XmiI GTMKAC 3 cut(s) 40, 58, 166
XspI CTAG 4 cut(s) 120, 392, 852, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.