Rroxscaffold_2G00086360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000216
Physical Location & Seq
Reverse (-)
8569044 .. 8569592
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086360.1

Sequence Viewer

Length: 549 bp
ATGCTGTATTCTGTGGGTGATGAACCTGGTGATCAAAATTTTCTTATGGGGTTGGATCCATTCATGATCAACAATAGTAATAGTGCTCTTAGTTTATCTAGTACTAATGGTGACAATATCATTGATCACTATAACTGTCGTTTCATTCGATTTGATGCTCCAGACTCTTTTCTACTTCGGTATCTTGGTGAATACAAAGGGTGTCTGCACATGTGCGACTATCATGATCATACCTCTACTCTTTTTGTTCGGGAAGCTGACAAATTATGTTTGGAAGGCATGATGAAGGATTATTCACTGGACATAAAAATGGTTCTGGGTTATGATATTGCTGATTTACGATTTTTAGACCCCAATAACGAGGATATTTTATATATGTACATAGTCAAAGACATTGTCAGGTACAACATTCGAACTAGAGATCGGTTAAAGCTGGTTGAAAACATCCCCTATGGGAATTCTTTTCTCTTTCCAATTGTGCTCCCTTGGTGGCCAACACCAGTTCCTAGACTACCACCACACGCCCAACCTGCAGGAATAAATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

182

Amino Acids

21.11

Weight (kDa)

4.96

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 538
AclWI GGATC 2 cut(s) 50, 63
AcoI YGGCCR 1 cut(s) 491
AcsI RAATTY 3 cut(s) 37, 457, 541
AfaI GTAC 3 cut(s) 103, 380, 404
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 1 cut(s) 440
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 2 cut(s) 257, 433
AluI AGCT 2 cut(s) 257, 433
Alw21I GWGCWC 2 cut(s) 88, 483
AlwI GGATC 2 cut(s) 50, 63
AoxI GGCC 1 cut(s) 491
ApoI RAATTY 3 cut(s) 37, 457, 541
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AsuHPI GGTGA 4 cut(s) 29, 41, 122, 200
AsuII TTCGAA 1 cut(s) 412
BaeI ACNNNNGTAYC 2 cut(s) 164, 197
BalI TGGCCA 1 cut(s) 493
BamHI GGATCC 1 cut(s) 55
Bbv12I GWGCWC 2 cut(s) 88, 483
BciT130I CCWGG 1 cut(s) 27
BclI TGATCA 4 cut(s) 31, 66, 124, 226
BfaI CTAG 3 cut(s) 99, 417, 507
BfmI CTRYAG 1 cut(s) 531
BfuAI ACCTGC 1 cut(s) 538
BmcAI AGTACT 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 485
Bse1I ACTGG 2 cut(s) 303, 500
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 485
BseGI GGATG 1 cut(s) 444
BseNI ACTGG 2 cut(s) 303, 500
BsgI GTGCAG 1 cut(s) 191
BshFI GGCC 1 cut(s) 493
BsiHKAI GWGCWC 2 cut(s) 88, 483
BsnI GGCC 1 cut(s) 493
Bsp119I TTCGAA 1 cut(s) 412
Bsp1286I GDGCHC 2 cut(s) 88, 483
Bsp1407I TGTACA 1 cut(s) 378
Bsp143I GATC 6 cut(s) 31, 55, 66, 124, 226, 421
BspANI GGCC 1 cut(s) 493
BspHI TCATGA 2 cut(s) 63, 223
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 535
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 2 cut(s) 50, 63
BspT104I TTCGAA 1 cut(s) 412
BsrGI TGTACA 1 cut(s) 378
BsrI ACTGG 2 cut(s) 303, 500
BssECI CCNNGG 1 cut(s) 485
BssMI GATC 6 cut(s) 31, 55, 66, 124, 226, 421
BssT1I CCWWGG 1 cut(s) 485
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 137
BstAUI TGTACA 1 cut(s) 378
BstBI TTCGAA 1 cut(s) 412
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 444
BstKTI GATC 6 cut(s) 34, 58, 69, 127, 229, 424
BstMBI GATC 6 cut(s) 31, 55, 66, 124, 226, 421
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 531
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuRI GGCC 1 cut(s) 493
BtsCI GGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 296
BveI ACCTGC 1 cut(s) 538
CciI TCATGA 2 cut(s) 63, 223
CsiI ACCWGGT 1 cut(s) 25
Csp6I GTAC 3 cut(s) 102, 379, 403
CviAII CATG 4 cut(s) 64, 211, 224, 280
CviJI RGCY 3 cut(s) 257, 433, 493
CviKI_1 RGCY 3 cut(s) 257, 433, 493
CviQI GTAC 3 cut(s) 102, 379, 403
DdeI CTNAG 1 cut(s) 89
DpnI GATC 6 cut(s) 33, 57, 68, 126, 228, 423
DpnII GATC 6 cut(s) 31, 55, 66, 124, 226, 421
EaeI YGGCCR 1 cut(s) 491
Eco130I CCWWGG 1 cut(s) 485
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 485
FaeI CATG 4 cut(s) 67, 214, 227, 283
FatI CATG 4 cut(s) 63, 210, 223, 279
FbaI TGATCA 4 cut(s) 31, 66, 124, 226
FokI GGATG 1 cut(s) 431
FspBI CTAG 3 cut(s) 99, 417, 507
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 493
Hin1II CATG 4 cut(s) 67, 214, 227, 283
HinfI GANTC 1 cut(s) 164
HphI GGTGA 4 cut(s) 29, 41, 122, 200
Hpy188I TCNGA 1 cut(s) 548
Hpy188III TCNNGA 4 cut(s) 64, 161, 224, 251
HpyAV CCTTC 2 cut(s) 269, 280
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 208, 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 4 cut(s) 67, 214, 227, 283
Ksp22I TGATCA 4 cut(s) 31, 66, 124, 226
Kzo9I GATC 6 cut(s) 31, 55, 66, 124, 226, 421
LmnI GCTCC 2 cut(s) 163, 486
LweI GCATC 1 cut(s) 145
MabI ACCWGGT 1 cut(s) 25
MaeI CTAG 3 cut(s) 99, 417, 507
MaeIII GTNAC 1 cut(s) 110
MalI GATC 6 cut(s) 33, 57, 68, 126, 228, 423
MboI GATC 6 cut(s) 31, 55, 66, 124, 226, 421
MfeI CAATTG 1 cut(s) 474
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 2 cut(s) 88, 483
MlsI TGGCCA 1 cut(s) 493
MluCI AATT 5 cut(s) 37, 263, 457, 474, 541
MluNI TGGCCA 1 cut(s) 493
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 2 cut(s) 244, 355
Mox20I TGGCCA 1 cut(s) 493
MscI TGGCCA 1 cut(s) 493
MseI TTAA 1 cut(s) 428
MslI CAYNNNNRTG 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 493
MspR9I CCNGG 1 cut(s) 27
MunI CAATTG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 1 cut(s) 530
NdeII GATC 6 cut(s) 31, 55, 66, 124, 226, 421
NlaIII CATG 4 cut(s) 67, 214, 227, 283
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 214
NspV TTCGAA 1 cut(s) 412
PagI TCATGA 2 cut(s) 63, 223
PciI ACATGT 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PflFI GACNNNGTC 1 cut(s) 395
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PscI ACATGT 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 57
PstI CTGCAG 1 cut(s) 535
PsuI RGATCY 1 cut(s) 55
PsyI GACNNNGTC 1 cut(s) 395
RsaI GTAC 3 cut(s) 103, 380, 404
RsaNI GTAC 3 cut(s) 102, 379, 403
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 1 cut(s) 428
Sau3AI GATC 6 cut(s) 31, 55, 66, 124, 226, 421
SbfI CCTGCAGG 1 cut(s) 535
ScaI AGTACT 1 cut(s) 103
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 27
SdaI CCTGCAGG 1 cut(s) 535
SduI GDGCHC 2 cut(s) 88, 483
SetI ASST 6 cut(s) 28, 236, 259, 404, 435, 532
SexAI ACCWGGT 1 cut(s) 25
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 531
SfuI TTCGAA 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 308
Sse8387I CCTGCAGG 1 cut(s) 535
Sse9I AATT 5 cut(s) 37, 263, 457, 474, 541
SspMI CTAG 3 cut(s) 99, 417, 507
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 1 cut(s) 137
TaqI TCGA 2 cut(s) 148, 412
TasI AATT 5 cut(s) 37, 263, 457, 474, 541
TatI WGTACW 2 cut(s) 101, 378
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 1 cut(s) 110
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 4 cut(s) 36, 52, 133, 299
TspRI CASTG 1 cut(s) 303
Tth111I GACNNNGTC 1 cut(s) 395
XapI RAATTY 3 cut(s) 37, 457, 541
XceI RCATGY 1 cut(s) 214
XspI CTAG 3 cut(s) 99, 417, 507
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.