Rmu_sc0002030.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002030.1
OG0000216
Physical Location & Seq
Reverse (-)
67929 .. 69308
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002030.1_g000015.1.cds

Sequence Viewer

Length: 1380 bp
atgagaggtatggacggcacttctgctagaaagagaagaaacaggagtttatcccccctggcctctaatcctattcatcacttgaaaacatcaaaaacttcatcatcaagttcagcagcatcaagaagacccccatcaaaactggtgactgctaatattgaaaatcttcccgaacatgttttggttgaaattctttgtcgtcgtccttgctataaattcgtctcgcaatgcaagtctgtgtccaaacgttggtgcactctcatgtcaaatccttctttcattggccgcttcctgtgcctgcaaatggaaaggccaataatacgtaccttgataaacgctgaagggttggaattccttaacaaaacttcatcattgtccaagccactaactcctttgttcagaagactgatgagtatttacagtttggagaaagagccaattgtggttggtacatataatgacttggttctctgctgtgcatccaagtatgaacaatatgattactacatctgcaatccatgcacaatccaatgggctgaacttccacccccgcctcgagtatacgagtacacacctgtgggattcatctgcgatctgccctactataatgataagacaggttatcaggaatcaggagataccatcaagcttaattcggagtataggtgcagggtggtgagaattatttttcctcctgatcaggaattttcctgcacattgggagtgcagatcttctcttctgagacgggtgaatggacagaatcaattgtatccactccatctgcccgttggtttgagtccattgatcacagctttagctttgcttgcaacggaatgttgtattggatgagtcgtcgtcaaaatttttttatttttgggttggatccgttcatggtcaacaatagtgacaatagtactagcactattactaatggcaataatactattgatcactataaacgtcgtttgattgaatttgatggctgtggttgtgaaatacttcggtgcgtaggagtccatagagggtgtttgcgcatgtccgagtacgactttgtcagtcgtgctgtcttggttgcggatcttattgtaggagaacaaggtggttggatggtcaagtgtcatggaggaacttccagattatgtataaaagacatggtgaggatttattcactggatgaagaaaaaatggatttgcagattgatgaagaaaatttgtgtatattgctagcttttgacccagacgatgatgatatcttttatctgcgggtagatgaggacattttcatgtgcaacatttttacaagtgaatggtcaaagatagcagatataaataggagcagggggttttatgaaatcaagacagagagtgcagaaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

459

Amino Acids

52.7

Weight (kDa)

5.92

Isoelectric Point (pI)

59.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1034
AccB7I CCANNNNNTGG 1 cut(s) 249
AccI GTMKAC 1 cut(s) 561
AciI CCGC 4 cut(s) 286, 551, 1076, 1264
AclI AACGTT 1 cut(s) 247
AclWI GGATC 3 cut(s) 878, 891, 1086
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 7 cut(s) 189, 215, 350, 704, 862, 974, 1210
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 5 cut(s) 325, 451, 569, 916, 1046
AfiI CCNNNNNNNGG 2 cut(s) 249, 304
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 4 cut(s) 85, 161, 188, 974
AjnI CCWGG 1 cut(s) 57
AjuI GAANNNNNNNTTGG 2 cut(s) 826, 858
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 4 cut(s) 649, 813, 819, 1229
AluI AGCT 4 cut(s) 649, 813, 819, 1229
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 2 cut(s) 226, 737
Alw44I GTGCAC 1 cut(s) 253
AlwI GGATC 3 cut(s) 878, 891, 1086
Ama87I CYCGRG 1 cut(s) 555
AoxI GGCC 3 cut(s) 60, 283, 311
ApaLI GTGCAC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 7 cut(s) 189, 215, 350, 704, 862, 974, 1210
Asp700I GAANNNNTTC 2 cut(s) 165, 999
AspLEI GCGC 1 cut(s) 1035
AsuHPI GGTGA 4 cut(s) 157, 688, 761, 1168
AsuNHI GCTAGC 1 cut(s) 1225
AvaI CYCGRG 1 cut(s) 555
BaeGI GKGCMC 1 cut(s) 257
BamHI GGATCC 1 cut(s) 883
BbsI GAAGAC 2 cut(s) 133, 409
Bbv12I GWGCWC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 128
BccI CCATC 5 cut(s) 142, 650, 787, 974, 1102
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 59
BciVI GTATCC 1 cut(s) 781
BclI TGATCA 3 cut(s) 697, 805, 949
BcoDI GTCTC 2 cut(s) 226, 737
BfaI CTAG 3 cut(s) 27, 918, 1226
BfuI GTATCC 1 cut(s) 781
BglII AGATCT 1 cut(s) 729
BisI GCNGC 2 cut(s) 117, 286
BlsI GCNGC 2 cut(s) 118, 287
BmcAI AGTACT 1 cut(s) 916
Bme1390I CCNGG 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 555
BmiI GGNNCC 1 cut(s) 885
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 2 cut(s) 128, 488
BmtI GCTAGC 1 cut(s) 1229
BpiI GAAGAC 2 cut(s) 133, 409
BsaAI YACGTR 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 650, 680
Bsc4I CCNNNNNNNGG 2 cut(s) 249, 304
Bse1I ACTGG 2 cut(s) 147, 1176
Bse3DI GCAATG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 4 cut(s) 479, 852, 1113, 1180
BseLI CCNNNNNNNGG 2 cut(s) 249, 304
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 732
BseNI ACTGG 2 cut(s) 147, 1176
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 1 cut(s) 128
BsgI GTGCAG 3 cut(s) 688, 697, 746
BshFI GGCC 3 cut(s) 62, 285, 313
BsiHKAI GWGCWC 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 555
BslI CCNNNNNNNGG 2 cut(s) 249, 304
BsmAI GTCTC 2 cut(s) 226, 737
BsmBI CGTCTC 2 cut(s) 226, 737
BsnI GGCC 3 cut(s) 62, 285, 313
BsoBI CYCGRG 1 cut(s) 555
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 7 cut(s) 592, 697, 729, 805, 883, 949, 1078
BspACI CCGC 4 cut(s) 286, 551, 1076, 1264
BspANI GGCC 3 cut(s) 62, 285, 313
BspCNI CTCAG 1 cut(s) 733
BspLI GGNNCC 1 cut(s) 885
BspOI GCTAGC 1 cut(s) 1229
BspPI GGATC 3 cut(s) 878, 891, 1086
BsrDI GCAATG 1 cut(s) 233
BsrI ACTGG 2 cut(s) 147, 1176
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 7 cut(s) 592, 697, 729, 805, 883, 949, 1078
BssNAI GTATAC 1 cut(s) 562
Bst1107I GTATAC 1 cut(s) 562
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 422
Bst6I CTCTTC 1 cut(s) 742
BstAPI GCANNNNNTGC 1 cut(s) 519
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 3 cut(s) 299, 826, 1227
BstDEI CTNAG 1 cut(s) 741
BstF5I GGATG 4 cut(s) 479, 852, 1113, 1180
BstHHI GCGC 1 cut(s) 1035
BstKTI GATC 7 cut(s) 595, 700, 732, 808, 886, 952, 1081
BstMAI GTCTC 2 cut(s) 226, 737
BstMBI GATC 7 cut(s) 592, 697, 729, 805, 883, 949, 1078
BstMWI GCNNNNNNNGC 3 cut(s) 294, 519, 825
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 2 cut(s) 179, 1039
BstSCI CCNGG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 257
BstSNI TACGTA 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 128
BstV2I GAAGAC 2 cut(s) 133, 409
BstX2I RGATCY 3 cut(s) 729, 883, 1078
BstYI RGATCY 3 cut(s) 729, 883, 1078
BstZ17I GTATAC 1 cut(s) 562
BsuI GTATCC 1 cut(s) 781
BsuRI GGCC 3 cut(s) 62, 285, 313
BtsCI GGATG 4 cut(s) 479, 852, 1113, 1180
BtsIMutI CAGTG 1 cut(s) 1169
Cac8I GCNNGC 3 cut(s) 299, 826, 1227
CfoI GCGC 1 cut(s) 1035
Csp6I GTAC 5 cut(s) 324, 450, 568, 915, 1045
CviAII CATG 8 cut(s) 176, 262, 519, 892, 1036, 1121, 1153, 1285
CviQI GTAC 5 cut(s) 324, 450, 568, 915, 1045
DdeI CTNAG 1 cut(s) 741
DpnI GATC 7 cut(s) 594, 699, 731, 807, 885, 951, 1080
DpnII GATC 7 cut(s) 592, 697, 729, 805, 883, 949, 1078
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 742
EarI CTCTTC 1 cut(s) 742
Eco105I TACGTA 1 cut(s) 323
Eco32I GATATC 1 cut(s) 1252
Eco57I CTGAAG 1 cut(s) 360
Eco88I CYCGRG 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 57
EcoRV GATATC 1 cut(s) 1252
Esp3I CGTCTC 2 cut(s) 226, 737
FaeI CATG 8 cut(s) 179, 265, 522, 895, 1039, 1124, 1156, 1288
FatI CATG 8 cut(s) 175, 261, 518, 891, 1035, 1120, 1152, 1284
FauI CCCGC 2 cut(s) 558, 1257
FbaI TGATCA 3 cut(s) 697, 805, 949
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 2 cut(s) 117, 286
FokI GGATG 4 cut(s) 466, 859, 1120, 1187
Fsp4HI GCNGC 2 cut(s) 117, 286
FspBI CTAG 3 cut(s) 27, 918, 1226
FspI TGCGCA 1 cut(s) 1034
GlaI GCGC 1 cut(s) 1034
GluI GCNGC 2 cut(s) 117, 286
HaeIII GGCC 3 cut(s) 62, 285, 313
HhaI GCGC 1 cut(s) 1035
Hin1II CATG 8 cut(s) 179, 265, 522, 895, 1039, 1124, 1156, 1288
Hin6I GCGC 1 cut(s) 1033
HinP1I GCGC 1 cut(s) 1033
HincII GTYRAC 1 cut(s) 898
HindII GTYRAC 1 cut(s) 898
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 6 cut(s) 582, 629, 761, 797, 850, 1014
HphI GGTGA 4 cut(s) 157, 688, 761, 1168
Hpy166II GTNNAC 4 cut(s) 255, 562, 570, 898
Hpy188I TCNGA 4 cut(s) 401, 658, 742, 1042
Hpy188III TCNNGA 8 cut(s) 123, 170, 626, 633, 695, 701, 1134, 1357
Hpy8I GTNNAC 4 cut(s) 255, 562, 570, 898
Hpy99I CGWCG 3 cut(s) 204, 858, 966
HpyAV CCTTC 2 cut(s) 282, 335
HpyCH4III ACNGT 1 cut(s) 422
HpyCH4IV ACGT 3 cut(s) 247, 322, 961
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 519, 825
HpyF3I CTNAG 1 cut(s) 741
HpySE526I ACGT 3 cut(s) 247, 322, 961
Hsp92II CATG 8 cut(s) 179, 265, 522, 895, 1039, 1124, 1156, 1288
HspAI GCGC 1 cut(s) 1033
Ksp22I TGATCA 3 cut(s) 697, 805, 949
Kzo9I GATC 7 cut(s) 592, 697, 729, 805, 883, 949, 1078
LmnI GCTCC 1 cut(s) 1335
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 2 cut(s) 128, 488
MaeI CTAG 3 cut(s) 27, 918, 1226
MaeII ACGT 3 cut(s) 247, 322, 961
MaeIII GTNAC 2 cut(s) 145, 905
MalI GATC 7 cut(s) 594, 699, 731, 807, 885, 951, 1080
MboI GATC 7 cut(s) 592, 697, 729, 805, 883, 949, 1078
MboII GAAGA 8 cut(s) 48, 138, 158, 414, 724, 729, 1190, 1217
MfeI CAATTG 2 cut(s) 438, 765
MflI RGATCY 3 cut(s) 729, 883, 1078
MhlI GDGCHC 1 cut(s) 257
MlyI GAGTC 3 cut(s) 806, 859, 1023
MmeI TCCRAC 3 cut(s) 327, 861, 1085
MnlI CCTC 7 cut(s) 73, 564, 702, 1016, 1118, 1152, 1267
MroXI GAANNNNTTC 2 cut(s) 165, 999
MseI TTAA 2 cut(s) 357, 651
MslI CAYNNNNRTG 3 cut(s) 260, 575, 1283
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 2 cut(s) 438, 765
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 3 cut(s) 294, 519, 825
NdeII GATC 7 cut(s) 592, 697, 729, 805, 883, 949, 1078
NheI GCTAGC 1 cut(s) 1225
NlaIII CATG 8 cut(s) 179, 265, 522, 895, 1039, 1124, 1156, 1288
NlaIV GGNNCC 1 cut(s) 885
NmuCI GTSAC 2 cut(s) 145, 905
NsbI TGCGCA 1 cut(s) 1034
NspI RCATGY 2 cut(s) 179, 1039
OliI CACNNNNGTG 1 cut(s) 575
PaeR7I CTCGAG 1 cut(s) 555
PciI ACATGT 1 cut(s) 175
PdmI GAANNNNTTC 2 cut(s) 165, 999
PfeI GAWTC 3 cut(s) 582, 629, 761
PflFI GACNNNGTC 1 cut(s) 1052
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 2 cut(s) 118, 287
PleI GAGTC 3 cut(s) 805, 858, 1022
PpsI GAGTC 3 cut(s) 805, 858, 1022
Ppu21I YACGTR 1 cut(s) 323
PscI ACATGT 1 cut(s) 175
Psp1406I AACGTT 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 885
PspXI VCTCGAGB 1 cut(s) 555
PsuI RGATCY 3 cut(s) 729, 883, 1078
PsyI GACNNNGTC 1 cut(s) 1052
RsaI GTAC 5 cut(s) 325, 451, 569, 916, 1046
RsaNI GTAC 5 cut(s) 324, 450, 568, 915, 1045
RseI CAYNNNNRTG 3 cut(s) 260, 575, 1283
SaqAI TTAA 2 cut(s) 357, 651
SatI GCNGC 2 cut(s) 117, 286
Sau3AI GATC 7 cut(s) 592, 697, 729, 805, 883, 949, 1078
ScaI AGTACT 1 cut(s) 916
SchI GAGTC 3 cut(s) 806, 859, 1023
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 257
SfaNI GCATC 2 cut(s) 128, 488
Sfr274I CTCGAG 1 cut(s) 555
SlaI CTCGAG 1 cut(s) 555
SmiMI CAYNNNNRTG 3 cut(s) 260, 575, 1283
SmlI CTYRAG 1 cut(s) 555
SmoI CTYRAG 1 cut(s) 555
SnaBI TACGTA 1 cut(s) 323
SsiI CCGC 4 cut(s) 286, 551, 1076, 1264
SspI AATATT 1 cut(s) 157
SspMI CTAG 3 cut(s) 27, 918, 1226
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 422
TaiI ACGT 3 cut(s) 250, 325, 964
TaqI TCGA 1 cut(s) 556
TatI WGTACW 2 cut(s) 567, 914
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 3 cut(s) 582, 629, 761
Tru1I TTAA 2 cut(s) 357, 651
Tru9I TTAA 2 cut(s) 357, 651
TscAI CASTG 1 cut(s) 1176
TseFI GTSAC 2 cut(s) 145, 905
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 2 cut(s) 145, 905
TspGWI ACGGA 2 cut(s) 846, 876
TspRI CASTG 1 cut(s) 1176
Tth111I GACNNNGTC 1 cut(s) 1052
Van91I CCANNNNNTGG 1 cut(s) 249
VneI GTGCAC 1 cut(s) 253
XapI RAATTY 7 cut(s) 189, 215, 350, 704, 862, 974, 1210
XceI RCATGY 2 cut(s) 179, 1039
XcmI CCANNNNNNNNNTGG 1 cut(s) 786
XhoI CTCGAG 1 cut(s) 555
XmiI GTMKAC 1 cut(s) 561
XmnI GAANNNNTTC 2 cut(s) 165, 999
XspI CTAG 3 cut(s) 27, 918, 1226
ZrmI AGTACT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.