FvH4_6g05203

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000216
Physical Location & Seq
Reverse (-)
2940234 .. 2941419
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05203.t1

Sequence Viewer

Length: 939 bp
ATGAGAGGTGGTGATAGTGCTCCTCCAAAAAGACAACACTCCCTGTCGACTTTCATTCGATCTCTGAATACTTGTATGGACGATCTCCCCGATGAGGTACTGATTGAAATTCTTCGTCGACTTCTTTGCTACAAGTTCGTTAATCAAACCAAGTTTGTGTCCAAGTGGTGGTGCACTCTCACATCCAATCCTCACTTCATTCGCCGCTTTCTAAGTAATCATAGGCAATCACAGACGTTGACGAACCGTACCCTAATAAACATACGAGGAGAAGAATTCCTTGATAGAATGTCTTCGTCCCCTAAGCCGCCGCTAAGTCCATTGTTCAAAAGAATCATGAGCTTCCATGGTCGTCTAAAAGCAGAGCCAGTAGTTATTGATCTTTTCTACGGATCAAAAAATTGCAACGAGATTCAAACTACAGGTGTTTTCTCCGAGACTGGTGAATGGAAAGAGTCAATTGTATCACTCCCATCGGGAATTGATATTAGGGCTTTCTATGGTCGTGGAATATCACCGTTTGTTTACGAGGGAATGCAATTTTGGGACTTTGTTGGTGTTTACCAGCACCCTTTTCTTATTGGATTGGATCCCTTCATGATCAACAACACTATTAGTGCTAATGGTACAATTGATCAGTATAAATTCCGTTTTATACAACTCAAAGAAAATTGGTTGTATCCCGTCAAGTGCCTAGGTGAGTGCAGAGGTGGTGGTGTTCGCATGTACGGCCCTGCTGGCGGTCATCGTTTTTCTCTTTGGGATTTGACTGAAGAAGAAATGCATGGTGCAAGTGTGGGATTGGGAGACGAAACCATTAAGAATTACTTGGAAGTCGATACAAAGAAGTGGCATGATGATGCTCTTCATGTGCTGGGTATTGACCCGAATAATGAAGATGATGAAGATATCTTTTATGTCCAAGGATTTTGCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

313

Amino Acids

35.83

Weight (kDa)

6.15

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 168
AccI GTMKAC 2 cut(s) 47, 118
AciI CCGC 5 cut(s) 205, 308, 311, 741, 933
AclWI GGATC 3 cut(s) 400, 584, 597
AcsI RAATTY 3 cut(s) 108, 275, 644
AcuI CTGAAG 1 cut(s) 792
AfaI GTAC 4 cut(s) 99, 250, 628, 728
AfiI CCNNNNNNNGG 3 cut(s) 94, 168, 740
AgsI TTSAA 3 cut(s) 107, 328, 416
AjuI GAANNNNNNNTTGG 4 cut(s) 179, 211, 526, 558
AluBI AGCT 1 cut(s) 342
AluI AGCT 1 cut(s) 342
Alw21I GWGCWC 2 cut(s) 22, 176
Alw26I GTCTC 2 cut(s) 431, 801
Alw44I GTGCAC 1 cut(s) 172
AlwI GGATC 3 cut(s) 400, 584, 597
AoxI GGCC 1 cut(s) 730
ApaLI GTGCAC 1 cut(s) 172
ApoI RAATTY 3 cut(s) 108, 275, 644
Asp700I GAANNNNTTC 2 cut(s) 111, 292
AspA2I CCTAGG 1 cut(s) 694
AspS9I GGNCC 1 cut(s) 731
AsuHPI GGTGA 4 cut(s) 23, 455, 507, 710
AvrII CCTAGG 1 cut(s) 694
BaeGI GKGCMC 1 cut(s) 176
BamHI GGATCC 1 cut(s) 589
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 2 cut(s) 22, 176
BccI CCATC 1 cut(s) 481
BceAI ACGGC 1 cut(s) 745
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BciVI GTATCC 1 cut(s) 690
BclI TGATCA 2 cut(s) 600, 634
BcoDI GTCTC 2 cut(s) 431, 801
BfaI CTAG 1 cut(s) 695
BfmI CTRYAG 1 cut(s) 420
BfuI GTATCC 1 cut(s) 690
BglI GCCNNNNNGGC 1 cut(s) 738
BisI GCNGC 3 cut(s) 205, 308, 311
BlnI CCTAGG 1 cut(s) 694
BlsI GCNGC 3 cut(s) 206, 309, 312
BmgT120I GGNCC 1 cut(s) 731
BmiI GGNNCC 1 cut(s) 591
BmsI GCATC 1 cut(s) 850
BpiI GAAGAC 1 cut(s) 285
Bpu10I CCTNAGC 1 cut(s) 303
BsaJI CCNNGG 3 cut(s) 346, 694, 922
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 168, 740
Bse1I ACTGG 2 cut(s) 368, 445
BseDI CCNNGG 3 cut(s) 346, 694, 922
BseGI GGATG 1 cut(s) 182
BseLI CCNNNNNNNGG 3 cut(s) 94, 168, 740
BseNI ACTGG 2 cut(s) 368, 445
BseRI GAGGAG 2 cut(s) 12, 282
BseSI GKGCMC 1 cut(s) 176
BseYI CCCAGC 1 cut(s) 874
BsgI GTGCAG 1 cut(s) 724
BshFI GGCC 1 cut(s) 732
BsiHKAI GWGCWC 2 cut(s) 22, 176
BslFI GGGAC 2 cut(s) 283, 560
BslI CCNNNNNNNGG 3 cut(s) 94, 168, 740
BsmAI GTCTC 2 cut(s) 431, 801
BsmBI CGTCTC 1 cut(s) 801
BsmFI GGGAC 2 cut(s) 283, 560
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 1 cut(s) 732
Bsp1286I GDGCHC 2 cut(s) 22, 176
Bsp143I GATC 7 cut(s) 59, 82, 379, 392, 589, 600, 634
Bsp19I CCATGG 1 cut(s) 346
BspACI CCGC 5 cut(s) 205, 308, 311, 741, 933
BspANI GGCC 1 cut(s) 732
BspHI TCATGA 2 cut(s) 336, 597
BspLI GGNNCC 1 cut(s) 591
BspPI GGATC 3 cut(s) 400, 584, 597
BspQI GCTCTTC 1 cut(s) 870
BsrI ACTGG 2 cut(s) 368, 445
BssECI CCNNGG 3 cut(s) 346, 694, 922
BssMI GATC 7 cut(s) 59, 82, 379, 392, 589, 600, 634
BssT1I CCWWGG 3 cut(s) 346, 694, 922
Bst4CI ACNGT 2 cut(s) 248, 519
Bst6I CTCTTC 1 cut(s) 870
BstC8I GCNNGC 1 cut(s) 739
BstDEI CTNAG 3 cut(s) 212, 303, 314
BstDSI CCRYGG 1 cut(s) 346
BstF5I GGATG 1 cut(s) 182
BstKTI GATC 7 cut(s) 62, 85, 382, 395, 592, 603, 637
BstMAI GTCTC 2 cut(s) 431, 801
BstMBI GATC 7 cut(s) 59, 82, 379, 392, 589, 600, 634
BstMWI GCNNNNNNNGC 2 cut(s) 729, 738
BstNSI RCATGY 1 cut(s) 727
BstSFI CTRYAG 1 cut(s) 420
BstSLI GKGCMC 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
BsuI GTATCC 1 cut(s) 690
BsuRI GGCC 1 cut(s) 732
BtgI CCRYGG 1 cut(s) 346
BtsCI GGATG 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 739
CciI TCATGA 2 cut(s) 336, 597
Cfr13I GGNCC 1 cut(s) 731
Csp6I GTAC 4 cut(s) 98, 249, 627, 727
CviAII CATG 7 cut(s) 337, 347, 598, 724, 785, 854, 869
CviJI RGCY 5 cut(s) 307, 342, 367, 494, 732
CviKI_1 RGCY 5 cut(s) 307, 342, 367, 494, 732
CviQI GTAC 4 cut(s) 98, 249, 627, 727
DdeI CTNAG 3 cut(s) 212, 303, 314
DpnI GATC 7 cut(s) 61, 84, 381, 394, 591, 602, 636
DpnII GATC 7 cut(s) 59, 82, 379, 392, 589, 600, 634
Eam1104I CTCTTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 870
Eco130I CCWWGG 3 cut(s) 346, 694, 922
Eco32I GATATC 1 cut(s) 910
Eco57I CTGAAG 1 cut(s) 792
EcoRI GAATTC 1 cut(s) 275
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 3 cut(s) 346, 694, 922
EcoT22I ATGCAT 1 cut(s) 786
ErhI CCWWGG 3 cut(s) 346, 694, 922
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 7 cut(s) 340, 350, 601, 727, 788, 857, 872
FalI AAGNNNNNCTT 4 cut(s) 264, 296, 812, 844
FaqI GGGAC 2 cut(s) 283, 560
FatI CATG 7 cut(s) 336, 346, 597, 723, 784, 853, 868
FbaI TGATCA 2 cut(s) 600, 634
FblI GTMKAC 2 cut(s) 47, 118
Fnu4HI GCNGC 3 cut(s) 205, 308, 311
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 3 cut(s) 205, 308, 311
FspBI CTAG 1 cut(s) 695
GluI GCNGC 3 cut(s) 205, 308, 311
GsaI CCCAGC 1 cut(s) 878
HaeIII GGCC 1 cut(s) 732
Hin1II CATG 7 cut(s) 340, 350, 601, 727, 788, 857, 872
HincII GTYRAC 3 cut(s) 48, 119, 240
HindII GTYRAC 3 cut(s) 48, 119, 240
HinfI GANTC 3 cut(s) 333, 412, 455
HphI GGTGA 4 cut(s) 23, 455, 507, 710
Hpy166II GTNNAC 6 cut(s) 48, 119, 174, 240, 526, 562
Hpy188I TCNGA 2 cut(s) 66, 436
Hpy188III TCNNGA 3 cut(s) 337, 477, 598
Hpy8I GTNNAC 6 cut(s) 48, 119, 174, 240, 526, 562
Hpy99I CGWCG 1 cut(s) 120
HpyAV CCTTC 1 cut(s) 604
HpyCH4III ACNGT 2 cut(s) 248, 519
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 6 cut(s) 174, 405, 538, 705, 784, 791
HpyF10VI GCNNNNNNNGC 2 cut(s) 729, 738
HpyF3I CTNAG 3 cut(s) 212, 303, 314
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 7 cut(s) 340, 350, 601, 727, 788, 857, 872
Ksp22I TGATCA 2 cut(s) 600, 634
Kzo9I GATC 7 cut(s) 59, 82, 379, 392, 589, 600, 634
LguI GCTCTTC 1 cut(s) 870
LmnI GCTCC 1 cut(s) 25
LpnPI CCDG 8 cut(s) 56, 381, 408, 426, 578, 723, 747, 860
LweI GCATC 1 cut(s) 850
MaeI CTAG 1 cut(s) 695
MaeII ACGT 1 cut(s) 236
MalI GATC 7 cut(s) 61, 84, 381, 394, 591, 602, 636
MboI GATC 7 cut(s) 59, 82, 379, 392, 589, 600, 634
MboII GAAGA 8 cut(s) 104, 284, 285, 785, 788, 857, 908, 917
MfeI CAATTG 2 cut(s) 459, 630
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 2 cut(s) 22, 176
MlyI GAGTC 1 cut(s) 464
MnlI CCTC 6 cut(s) 33, 88, 201, 260, 523, 701
Mph1103I ATGCAT 1 cut(s) 786
MroXI GAANNNNTTC 2 cut(s) 111, 292
MseI TTAA 2 cut(s) 141, 819
MslI CAYNNNNRTG 1 cut(s) 858
MunI CAATTG 2 cut(s) 459, 630
Mva1269I GAATGC 1 cut(s) 540
MwoI GCNNNNNNNGC 2 cut(s) 729, 738
NcoI CCATGG 1 cut(s) 346
NdeII GATC 7 cut(s) 59, 82, 379, 392, 589, 600, 634
NlaIII CATG 7 cut(s) 340, 350, 601, 727, 788, 857, 872
NlaIV GGNNCC 1 cut(s) 591
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 1 cut(s) 727
PagI TCATGA 2 cut(s) 336, 597
PciSI GCTCTTC 1 cut(s) 870
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 540
PdmI GAANNNNTTC 2 cut(s) 111, 292
PfeI GAWTC 2 cut(s) 333, 412
PflMI CCANNNNNTGG 1 cut(s) 168
PkrI GCNGC 3 cut(s) 206, 309, 312
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
PspFI CCCAGC 1 cut(s) 874
PspN4I GGNNCC 1 cut(s) 591
PspPI GGNCC 1 cut(s) 731
PsuI RGATCY 1 cut(s) 589
RsaI GTAC 4 cut(s) 99, 250, 628, 728
RsaNI GTAC 4 cut(s) 98, 249, 627, 727
RseI CAYNNNNRTG 1 cut(s) 858
SalI GTCGAC 2 cut(s) 46, 117
SapI GCTCTTC 1 cut(s) 870
SaqAI TTAA 2 cut(s) 141, 819
SatI GCNGC 3 cut(s) 205, 308, 311
Sau3AI GATC 7 cut(s) 59, 82, 379, 392, 589, 600, 634
Sau96I GGNCC 1 cut(s) 731
SchI GAGTC 1 cut(s) 464
SduI GDGCHC 2 cut(s) 22, 176
SetI ASST 7 cut(s) 10, 99, 239, 344, 427, 700, 712
SfaNI GCATC 1 cut(s) 850
SfcI CTRYAG 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 858
SsiI CCGC 5 cut(s) 205, 308, 311, 741, 933
SspMI CTAG 1 cut(s) 695
StyI CCWWGG 3 cut(s) 346, 694, 922
TaaI ACNGT 2 cut(s) 248, 519
TaiI ACGT 1 cut(s) 239
TaqI TCGA 4 cut(s) 47, 58, 118, 837
TauI GCSGC 3 cut(s) 207, 310, 313
TfiI GAWTC 2 cut(s) 333, 412
Tru1I TTAA 2 cut(s) 141, 819
Tru9I TTAA 2 cut(s) 141, 819
TspDTI ATGAA 6 cut(s) 43, 187, 586, 857, 909, 918
TspGWI ACGGA 2 cut(s) 405, 638
Van91I CCANNNNNTGG 1 cut(s) 168
VneI GTGCAC 1 cut(s) 172
XapI RAATTY 3 cut(s) 108, 275, 644
XceI RCATGY 1 cut(s) 727
XmaJI CCTAGG 1 cut(s) 694
XmiI GTMKAC 2 cut(s) 47, 118
XmnI GAANNNNTTC 2 cut(s) 111, 292
XspI CTAG 1 cut(s) 695
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.