Rroxscaffold_7G00192830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000216
Physical Location & Seq
Reverse (-)
34191842 .. 34200331
8490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192830.1

Sequence Viewer

Length: 894 bp
ATGAGAGGTATGGACGGCACTTCTGCTAGAAAAAGAAGAAACAGGAGTTTGTCCCCCCCGGCCTCTAATCCTATTCATCACTTGAAAACATCAAAAACTTCATCATCAAGTTCAGCAGCATCAAGAAGACCACCATCAAAACTGATGAATGCTAATATTGATAATCTTCCCGAACATGTTTTGGTTGAAATTCTCTGTCAACTTCCTTGCTATAAATTCGTCTCTCAATGCAAGTGTGTGTCCAAACGTTGGTGCACTCTCATGTCAAATCCTTCTTTCATTGGCCGCTTCCTGTGCCTGCAAATGGAAAGGCCAATAATACGTACCTTGATAAACGCTGAAGGGTTGGAATTCCTTAACAAAACTTCATCATTGTCCAAGCCACTAACTCCTTTGTTCAGAAGACTGATGAGTATTTACAGTTTGGAGAAAGAGCCAATTGTGGTTGGTACATATAATGACTTGGTTCTCTGCTGTGCAACCAAGTATGAACAACGTGATTACTACATCTGCAATCCATGCACAATCCAATGGGCTGAACTTCCACCCCCGCCTCGAGTATACGAGTACACACCTGTGGGATTCATCTGCGATCTTCCCTATTATAATGATAAGACAGGTGATCAGGAATCAGGAGATACCATCAAGCTTAATTTGGAGTATAGGTGCAGGGTTGTGAGAATTGTTTTTTCCCCTGATCAGGAATTTTCCTGCACATTGGGAGTGCAGATCTTCTCTTCTGAGACGGGTGAATGGACAGAATCAATTGTATCCCCCCAACTGCCCTTAGGTATGAGTCCATTGATCCCAACATTAGCTTTGCTTGCAACGGAATGTTGTATTGGATGGGTCGTCGTCGAAATTTTTTTATTTTTGGGTTGGATCCATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

297

Amino Acids

33.63

Weight (kDa)

8.32

Isoelectric Point (pI)

58.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 53 - 93 9e-06 F-box-like
b-prop_At3g26010-like PF24750 121 - 258 2.7e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AccB7I CCANNNNNTGG 1 cut(s) 249
AccI GTMKAC 1 cut(s) 561
AciI CCGC 2 cut(s) 286, 551
AclI AACGTT 1 cut(s) 247
AclWI GGATC 3 cut(s) 799, 877, 890
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 5 cut(s) 189, 215, 350, 704, 861
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 3 cut(s) 325, 451, 569
AfiI CCNNNNNNNGG 3 cut(s) 249, 304, 700
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 2 cut(s) 85, 188
AjuI GAANNNNNNNTTGG 2 cut(s) 825, 857
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 2 cut(s) 649, 818
AluI AGCT 2 cut(s) 649, 818
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 2 cut(s) 226, 737
Alw44I GTGCAC 1 cut(s) 253
AlwI GGATC 3 cut(s) 799, 877, 890
Ama87I CYCGRG 1 cut(s) 555
AoxI GGCC 3 cut(s) 60, 283, 311
ApaLI GTGCAC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 116
ApoI RAATTY 5 cut(s) 189, 215, 350, 704, 861
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 632, 761
AvaI CYCGRG 1 cut(s) 555
AxyI CCTNAGG 1 cut(s) 787
BaeGI GKGCMC 1 cut(s) 257
BamHI GGATCC 1 cut(s) 882
BbsI GAAGAC 2 cut(s) 133, 409
Bbv12I GWGCWC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 128
BccI CCATC 3 cut(s) 142, 650, 840
BceAI ACGGC 1 cut(s) 31
BciVI GTATCC 1 cut(s) 781
BclI TGATCA 2 cut(s) 622, 697
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 2 cut(s) 226, 737
BfaI CTAG 1 cut(s) 27
BfuI GTATCC 1 cut(s) 781
BglII AGATCT 1 cut(s) 729
BisI GCNGC 2 cut(s) 117, 286
BlsI GCNGC 2 cut(s) 118, 287
Bme1390I CCNGG 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 555
BmiI GGNNCC 1 cut(s) 884
BmrFI CCNGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 128
BpiI GAAGAC 2 cut(s) 133, 409
BpuMI CCSGG 1 cut(s) 59
BsaAI YACGTR 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 650, 680
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 304, 700
Bse21I CCTNAGG 1 cut(s) 787
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 851
BseLI CCNNNNNNNGG 3 cut(s) 249, 304, 700
BseMII CTCAG 1 cut(s) 732
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 1 cut(s) 128
BsgI GTGCAG 3 cut(s) 688, 697, 746
BshFI GGCC 3 cut(s) 62, 285, 313
BsiHKAI GWGCWC 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 555
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 37
BslI CCNNNNNNNGG 3 cut(s) 249, 304, 700
BsmAI GTCTC 2 cut(s) 226, 737
BsmBI CGTCTC 2 cut(s) 226, 737
BsmFI GGGAC 1 cut(s) 37
BsmI GAATGC 1 cut(s) 154
BsnI GGCC 3 cut(s) 62, 285, 313
BsoBI CYCGRG 1 cut(s) 555
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 6 cut(s) 592, 622, 697, 729, 804, 882
BspACI CCGC 2 cut(s) 286, 551
BspANI GGCC 3 cut(s) 62, 285, 313
BspCNI CTCAG 1 cut(s) 733
BspHI TCATGA 1 cut(s) 890
BspLI GGNNCC 1 cut(s) 884
BspPI GGATC 3 cut(s) 799, 877, 890
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 6 cut(s) 592, 622, 697, 729, 804, 882
BssNAI GTATAC 1 cut(s) 562
Bst1107I GTATAC 1 cut(s) 562
Bst4CI ACNGT 1 cut(s) 422
Bst6I CTCTTC 1 cut(s) 742
BstAPI GCANNNNNTGC 1 cut(s) 519
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 299, 825
BstDEI CTNAG 2 cut(s) 741, 787
BstF5I GGATG 1 cut(s) 851
BstKTI GATC 6 cut(s) 595, 625, 700, 732, 807, 885
BstMAI GTCTC 2 cut(s) 226, 737
BstMBI GATC 6 cut(s) 592, 622, 697, 729, 804, 882
BstMWI GCNNNNNNNGC 3 cut(s) 294, 519, 824
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 257
BstSNI TACGTA 1 cut(s) 323
BstV1I GCAGC 1 cut(s) 128
BstV2I GAAGAC 2 cut(s) 133, 409
BstX2I RGATCY 2 cut(s) 729, 882
BstYI RGATCY 2 cut(s) 729, 882
BstZ17I GTATAC 1 cut(s) 562
Bsu36I CCTNAGG 1 cut(s) 787
BsuI GTATCC 1 cut(s) 781
BsuRI GGCC 3 cut(s) 62, 285, 313
BtsCI GGATG 1 cut(s) 851
Cac8I GCNNGC 2 cut(s) 299, 825
CciI TCATGA 1 cut(s) 890
Csp6I GTAC 3 cut(s) 324, 450, 568
CviAII CATG 4 cut(s) 176, 262, 519, 891
CviJI RGCY 8 cut(s) 62, 285, 313, 382, 436, 536, 649, 818
CviKI_1 RGCY 8 cut(s) 62, 285, 313, 382, 436, 536, 649, 818
CviQI GTAC 3 cut(s) 324, 450, 568
DdeI CTNAG 2 cut(s) 741, 787
DpnI GATC 6 cut(s) 594, 624, 699, 731, 806, 884
DpnII GATC 6 cut(s) 592, 622, 697, 729, 804, 882
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 742
EarI CTCTTC 1 cut(s) 742
Eco105I TACGTA 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 360
Eco81I CCTNAGG 1 cut(s) 787
Eco88I CYCGRG 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 350
Esp3I CGTCTC 2 cut(s) 226, 737
FaeI CATG 4 cut(s) 179, 265, 522, 894
FaqI GGGAC 1 cut(s) 37
FatI CATG 4 cut(s) 175, 261, 518, 890
FauI CCCGC 1 cut(s) 558
FbaI TGATCA 2 cut(s) 622, 697
FblI GTMKAC 1 cut(s) 561
Fnu4HI GCNGC 2 cut(s) 117, 286
FokI GGATG 1 cut(s) 858
Fsp4HI GCNGC 2 cut(s) 117, 286
FspBI CTAG 1 cut(s) 27
GluI GCNGC 2 cut(s) 117, 286
HaeIII GGCC 3 cut(s) 62, 285, 313
HapII CCGG 1 cut(s) 59
Hin1II CATG 4 cut(s) 179, 265, 522, 894
HincII GTYRAC 1 cut(s) 200
HindII GTYRAC 1 cut(s) 200
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 4 cut(s) 582, 629, 761, 796
HpaII CCGG 1 cut(s) 59
HphI GGTGA 2 cut(s) 632, 761
Hpy166II GTNNAC 4 cut(s) 200, 255, 562, 570
Hpy188I TCNGA 2 cut(s) 401, 742
Hpy188III TCNNGA 6 cut(s) 123, 170, 626, 633, 701, 891
Hpy8I GTNNAC 4 cut(s) 200, 255, 562, 570
Hpy99I CGWCG 2 cut(s) 857, 860
HpyAV CCTTC 2 cut(s) 282, 335
HpyCH4III ACNGT 1 cut(s) 422
HpyCH4IV ACGT 3 cut(s) 247, 322, 496
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 519, 824
HpyF3I CTNAG 2 cut(s) 741, 787
HpySE526I ACGT 3 cut(s) 247, 322, 496
Hsp92II CATG 4 cut(s) 179, 265, 522, 894
Ksp22I TGATCA 2 cut(s) 622, 697
Kzo9I GATC 6 cut(s) 592, 622, 697, 729, 804, 882
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 1 cut(s) 128
MaeI CTAG 1 cut(s) 27
MaeII ACGT 3 cut(s) 247, 322, 496
MalI GATC 6 cut(s) 594, 624, 699, 731, 806, 884
MboI GATC 6 cut(s) 592, 622, 697, 729, 804, 882
MboII GAAGA 7 cut(s) 48, 138, 158, 414, 587, 724, 729
MfeI CAATTG 2 cut(s) 438, 765
MflI RGATCY 2 cut(s) 729, 882
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 9 cut(s) 189, 215, 350, 438, 652, 681, 704, 765, 861
MlyI GAGTC 1 cut(s) 805
MmeI TCCRAC 2 cut(s) 327, 860
MnlI CCTC 2 cut(s) 73, 564
MseI TTAA 2 cut(s) 357, 651
MslI CAYNNNNRTG 2 cut(s) 260, 575
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 59
MunI CAATTG 2 cut(s) 438, 765
Mva1269I GAATGC 1 cut(s) 154
MwoI GCNNNNNNNGC 3 cut(s) 294, 519, 824
NciI CCSGG 1 cut(s) 59
NdeII GATC 6 cut(s) 592, 622, 697, 729, 804, 882
NlaIII CATG 4 cut(s) 179, 265, 522, 894
NlaIV GGNNCC 1 cut(s) 884
NspI RCATGY 1 cut(s) 179
OliI CACNNNNGTG 1 cut(s) 575
PaeR7I CTCGAG 1 cut(s) 555
PagI TCATGA 1 cut(s) 890
PciI ACATGT 1 cut(s) 175
PctI GAATGC 1 cut(s) 154
PfeI GAWTC 3 cut(s) 582, 629, 761
PflMI CCANNNNNTGG 1 cut(s) 249
PkrI GCNGC 2 cut(s) 118, 287
PleI GAGTC 1 cut(s) 804
PpsI GAGTC 1 cut(s) 804
Ppu21I YACGTR 1 cut(s) 323
PscI ACATGT 1 cut(s) 175
PsiI TTATAA 1 cut(s) 606
Psp1406I AACGTT 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 884
PspXI VCTCGAGB 1 cut(s) 555
PsuI RGATCY 2 cut(s) 729, 882
RsaI GTAC 3 cut(s) 325, 451, 569
RsaNI GTAC 3 cut(s) 324, 450, 568
RseI CAYNNNNRTG 2 cut(s) 260, 575
SaqAI TTAA 2 cut(s) 357, 651
SatI GCNGC 2 cut(s) 117, 286
Sau3AI GATC 6 cut(s) 592, 622, 697, 729, 804, 882
SchI GAGTC 1 cut(s) 805
ScrFI CCNGG 1 cut(s) 59
SduI GDGCHC 1 cut(s) 257
SfaNI GCATC 1 cut(s) 128
Sfr274I CTCGAG 1 cut(s) 555
SlaI CTCGAG 1 cut(s) 555
SmiMI CAYNNNNRTG 2 cut(s) 260, 575
SmlI CTYRAG 1 cut(s) 555
SmoI CTYRAG 1 cut(s) 555
SnaBI TACGTA 1 cut(s) 323
Sse9I AATT 9 cut(s) 189, 215, 350, 438, 652, 681, 704, 765, 861
SsiI CCGC 2 cut(s) 286, 551
SspI AATATT 1 cut(s) 157
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 422
TaiI ACGT 3 cut(s) 250, 325, 499
TaqI TCGA 2 cut(s) 556, 858
TasI AATT 9 cut(s) 189, 215, 350, 438, 652, 681, 704, 765, 861
TatI WGTACW 1 cut(s) 567
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 3 cut(s) 582, 629, 761
Tru1I TTAA 2 cut(s) 357, 651
Tru9I TTAA 2 cut(s) 357, 651
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 8 cut(s) 65, 90, 161, 268, 357, 504, 574, 879
TspGWI ACGGA 1 cut(s) 845
Van91I CCANNNNNTGG 1 cut(s) 249
VneI GTGCAC 1 cut(s) 253
XapI RAATTY 5 cut(s) 189, 215, 350, 704, 861
XceI RCATGY 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 555
XmiI GTMKAC 1 cut(s) 561
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.