RLG00000021441

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000216
Physical Location & Seq
Forward (+)
75508333 .. 75508938
606 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021441

Sequence Viewer

Length: 606 bp
ATGACCAATATTACTTTTGCTCACAATGAAATGCTGCTGTATTGGACGAGCAATTTTGAGTATGATAGATATCTTATCGAATTGGGTCCCTTCATGACCAACAACAACAACAACAACCTTCGATTTCGTGTGATCAAATTACCGGATCAACCGCATCTACTTGATTTGTTGGGTGTGTACGGAGGATGTCTGCGGATGTATGACTGTGACAAGAGTGAACGCAAGCAGCTATATGTTTGGCAATTGAATACAGAAGACATAGATGGGATTGTGAGCGATAGAGGAGTTGGAAAATTGGGTAATGGACACTTGAGACGTTATTCACTGCCCGGAAAAATTCTTACCGATGATGTTGGGCAAATAGACCTGCTAGCTTTCGACTCAAATGATCATGATATCATTTATCTACTTATACAAGATGAAATCTTCCGTTGCAACATTTGTACAAAAAAGTGGTCAGAACTCCCCGGAGGCTGCGATAGAAATAAAGTTTACATGTCTCCATTTTTGCTCCCATTGTGGCCTACACCGGTTCCGAGACTGCCACAGCAATCGAATGCCCACCAGCCACCGTCACTGCCACCACCACCGCCATATGTAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

202

Amino Acids

23.22

Weight (kDa)

5.69

Isoelectric Point (pI)

58.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G38860 AT5G38860
fragaria_vesca FvH4_2g24261 FvH4_2g24270 FvH4_3g35490 FvH4_6g03181 FvH4_6g03182 FvH4_6g03221 FvH4_6g03380 FvH4_6g05203 FvH4_6g31981 FvH4_6g32061 FvH4_6g37041 FvH4_6g39371 FvH4_6g45291 FvH4_6g45890 FvH4_6g46240 FvH4_6g46241 FvH4_6g46242 FvH4_6g46260 FvH4_6g46280 FvH4_6g46280 FvH4_6g46280 FvH4_6g46290 FvH4_6g46290 FvH4_6g46380
malus_domestica MD02G1008700.v1.1 MD02G1008900.v1.1 MD04G1180900.v1.1 MD04G1181200.v1.1 MD09G1075900.v1.1 MD09G1201600.v1.1 MD15G1017800.v1.1 MD17G1066600.v1.1
prunus_persica Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509300_v2.0.a1 Prupe.1G509700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G510700_v2.0.a1 Prupe.1G512600_v2.0.a1 Prupe.3G059500_v2.0.a1 Prupe.3G059600_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.3G248100_v2.0.a1 Prupe.6G076400_v2.0.a1
pyrus_communis pycom02g00750 pycom03g20320 pycom09g00330 pycom11g08760 pycom17g04880 pycom17g06710 pycom17g19130
rosa_chinensis RchiOBHm_Chr2g0123691 RchiOBHm_Chr2g0164671 RchiOBHm_Chr2g0164681 RchiOBHm_Chr2g0164721 RchiOBHm_Chr2g0164741 RchiOBHm_Chr6g0275871 RchiOBHm_Chr6g0276071 RchiOBHm_Chr6g0291931 RchiOBHm_Chr6g0292091 RchiOBHm_Chr6g0292271 RchiOBHm_Chr7g0221261
rosa_laevigata RLG00000002165 RLG00000007725 RLG00000012062 RLG00000012543 RLG00000013427 RLG00000021441 RLG00000021477 RLG00000021478 RLG00000021480 RLG00000021481
rosa_multiflora Rmu_co8220318.1_g000001 Rmu_co8427407.1_g000001 Rmu_sc0000946.1_g000006 Rmu_sc0000946.1_g000007 Rmu_sc0000946.1_g000010 Rmu_sc0000946.1_g000012 Rmu_sc0000946.1_g000013 Rmu_sc0002030.1_g000015 Rmu_sc0002870.1_g000002 Rmu_sc0003200.1_g000004 Rmu_sc0004915.1_g000002 Rmu_sc0004991.1_g000006 Rmu_sc0006928.1_g000020 Rmu_sc0007384.1_g000001 Rmu_sc0030722.1_g000001 Rmu_sc0030723.1_g000001 Rmu_ssc0000076.1_g000019 Rmu_ssc0000076.1_g000025 Rmu_ssc0000318.1_g000001
rosa_roxburghii Rroxscaffold_2G00086340 Rroxscaffold_2G00086360 Rroxscaffold_2G00086370 Rroxscaffold_2G00086380 Rroxscaffold_2G00086830 Rroxscaffold_2G00087380 Rroxscaffold_2G00120420 Rroxscaffold_7G00175260 Rroxscaffold_7G00175600 Rroxscaffold_7G00177970 Rroxscaffold_7G00192830
rosa_rugosa Rorug02G0247400 Rorug02G0506200 Rorug02G0508300 Rorug02G0509700 Rorug05G0378800 Rorug06G0096600 Rorug06G0096700 Rorug06G0221800
rosa_samantha Rh2AG577600 Rh2AG577700 Rh2AG577800 Rh2AG578000 Rh2AG578100 Rh2BG589200 Rh2CG559800 Rh2DG594400 Rh2DG594500 Rh2DG597800 Rh2DG599400 Rh2DG599500 Rh2DG599600 Rh6AG338400 Rh6BG211200 Rh6BG212600 Rh6BG342900 Rh6BG345600 Rh6CG214800 Rh6CG349100 Rh6CG350600 Rh6CG350700 Rh6CG352600 Rh7AG340800
rosa_wichuraiana Rw1G028590 Rw2G047980 Rw2G047990 Rw5G043360 Rw6G018180 Rw6G029200 Rw6G029450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 375
AciI CCGC 3 cut(s) 152, 193, 590
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 336
AfaI GTAC 2 cut(s) 179, 445
AflIII ACRYGT 1 cut(s) 495
AgeI ACCGGT 1 cut(s) 529
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 2 cut(s) 229, 374
AluI AGCT 2 cut(s) 229, 374
Alw26I GTCTC 3 cut(s) 307, 504, 532
AlwI GGATC 1 cut(s) 153
AoxI GGCC 1 cut(s) 521
ApeKI GCWGC 3 cut(s) 34, 226, 474
ApoI RAATTY 1 cut(s) 336
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AsiGI ACCGGT 1 cut(s) 529
AspS9I GGNCC 1 cut(s) 86
AsuC2I CCSGG 2 cut(s) 330, 468
AsuNHI GCTAGC 1 cut(s) 370
AvaII GGWCC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 261
BbvI GCAGC 3 cut(s) 21, 238, 461
BccI CCATC 1 cut(s) 257
BclI TGATCA 2 cut(s) 132, 388
BcnI CCSGG 2 cut(s) 330, 468
BcoDI GTCTC 3 cut(s) 307, 504, 532
BfaI CTAG 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 375
BisI GCNGC 3 cut(s) 35, 227, 475
BlsI GCNGC 3 cut(s) 36, 228, 476
Bme1390I CCNGG 2 cut(s) 330, 468
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 3 cut(s) 87, 88, 534
BmrFI CCNGG 2 cut(s) 330, 468
BmsI GCATC 1 cut(s) 163
BmtI GCTAGC 1 cut(s) 374
BpiI GAAGAC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 331
BpuMI CCSGG 2 cut(s) 330, 468
BsaBI GATNNNNATC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 466
BsaWI WCCGGW 2 cut(s) 142, 529
Bse118I RCCGGY 1 cut(s) 529
Bse8I GATNNNNATC 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 2 cut(s) 191, 201
BseJI GATNNNNATC 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 3 cut(s) 21, 238, 461
BshFI GGCC 1 cut(s) 523
BshTI ACCGGT 1 cut(s) 529
BsiSI CCGG 4 cut(s) 143, 330, 468, 530
BslFI GGGAC 1 cut(s) 72
BsmAI GTCTC 3 cut(s) 307, 504, 532
BsmBI CGTCTC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 1 cut(s) 523
Bsp1407I TGTACA 1 cut(s) 443
Bsp143I GATC 3 cut(s) 132, 145, 388
BspACI CCGC 3 cut(s) 152, 193, 590
BspANI GGCC 1 cut(s) 523
BspHI TCATGA 2 cut(s) 93, 391
BspLI GGNNCC 3 cut(s) 87, 88, 534
BspMI ACCTGC 1 cut(s) 375
BspOI GCTAGC 1 cut(s) 374
BspPI GGATC 1 cut(s) 153
BsrFI RCCGGY 1 cut(s) 529
BsrGI TGTACA 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 529
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 3 cut(s) 132, 145, 388
Bst4CI ACNGT 2 cut(s) 206, 573
BstAUI TGTACA 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 224, 372
BstF5I GGATG 2 cut(s) 191, 201
BstKTI GATC 3 cut(s) 135, 148, 391
BstMAI GTCTC 3 cut(s) 307, 504, 532
BstMBI GATC 3 cut(s) 132, 145, 388
BstNSI RCATGY 1 cut(s) 499
BstSCI CCNGG 2 cut(s) 328, 466
BstV1I GCAGC 3 cut(s) 21, 238, 461
BstV2I GAAGAC 1 cut(s) 261
BsuRI GGCC 1 cut(s) 523
BtsCI GGATG 2 cut(s) 191, 201
BtsI GCAGTG 2 cut(s) 323, 575
BtsIMutI CAGTG 2 cut(s) 323, 575
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 2 cut(s) 224, 372
CciI TCATGA 2 cut(s) 93, 391
Cfr10I RCCGGY 1 cut(s) 529
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 178, 444
CspAI ACCGGT 1 cut(s) 529
CviAII CATG 3 cut(s) 94, 392, 496
CviJI RGCY 5 cut(s) 229, 374, 474, 523, 568
CviKI_1 RGCY 5 cut(s) 229, 374, 474, 523, 568
CviQI GTAC 2 cut(s) 178, 444
DpnI GATC 3 cut(s) 134, 147, 390
DpnII GATC 3 cut(s) 132, 145, 388
Eco32I GATATC 2 cut(s) 71, 397
Eco47I GGWCC 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 86
EcoRV GATATC 2 cut(s) 71, 397
Esp3I CGTCTC 1 cut(s) 307
FaeI CATG 3 cut(s) 97, 395, 499
FaqI GGGAC 1 cut(s) 72
FatI CATG 3 cut(s) 93, 391, 495
FauNDI CATATG 1 cut(s) 595
FbaI TGATCA 2 cut(s) 132, 388
Fnu4HI GCNGC 3 cut(s) 35, 227, 475
FokI GGATG 2 cut(s) 198, 208
Fsp4HI GCNGC 3 cut(s) 35, 227, 475
FspBI CTAG 1 cut(s) 371
GluI GCNGC 3 cut(s) 35, 227, 475
HaeIII GGCC 1 cut(s) 523
HapII CCGG 4 cut(s) 143, 330, 468, 530
Hin1II CATG 3 cut(s) 97, 395, 499
HinfI GANTC 1 cut(s) 380
HpaII CCGG 4 cut(s) 143, 330, 468, 530
Hpy166II GTNNAC 3 cut(s) 178, 218, 493
Hpy188I TCNGA 2 cut(s) 460, 537
Hpy188III TCNNGA 2 cut(s) 94, 392
Hpy8I GTNNAC 3 cut(s) 178, 218, 493
HpyAV CCTTC 2 cut(s) 100, 128
HpyCH4III ACNGT 2 cut(s) 206, 573
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 435
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 3 cut(s) 97, 395, 499
KflI GGGWCCC 1 cut(s) 86
Ksp22I TGATCA 2 cut(s) 132, 388
Kzo9I GATC 3 cut(s) 132, 145, 388
LmnI GCTCC 1 cut(s) 516
LpnPI CCDG 6 cut(s) 156, 343, 380, 481, 543, 578
Lsp1109I GCAGC 3 cut(s) 21, 238, 461
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 371
MaeII ACGT 1 cut(s) 316
MaeIII GTNAC 2 cut(s) 206, 573
MalI GATC 3 cut(s) 134, 147, 390
MboI GATC 3 cut(s) 132, 145, 388
MboII GAAGA 2 cut(s) 266, 418
MfeI CAATTG 1 cut(s) 242
MluCI AATT 7 cut(s) 52, 80, 137, 242, 293, 336, 601
MlyI GAGTC 1 cut(s) 374
MmeI TCCRAC 1 cut(s) 268
MnlI CCTC 3 cut(s) 176, 275, 464
MspI CCGG 4 cut(s) 143, 330, 468, 530
MspR9I CCNGG 2 cut(s) 330, 468
MunI CAATTG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 562
NciI CCSGG 2 cut(s) 330, 468
NdeI CATATG 1 cut(s) 595
NdeII GATC 3 cut(s) 132, 145, 388
NheI GCTAGC 1 cut(s) 370
NlaIII CATG 3 cut(s) 97, 395, 499
NlaIV GGNNCC 3 cut(s) 87, 88, 534
NmuCI GTSAC 2 cut(s) 206, 573
NspI RCATGY 1 cut(s) 499
PagI TCATGA 2 cut(s) 93, 391
PciI ACATGT 1 cut(s) 495
PctI GAATGC 1 cut(s) 562
PinAI ACCGGT 1 cut(s) 529
PkrI GCNGC 3 cut(s) 36, 228, 476
PleI GAGTC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 374
PpuMI RGGWCCY 1 cut(s) 86
PscI ACATGT 1 cut(s) 495
Psp5II RGGWCCY 1 cut(s) 86
PspN4I GGNNCC 3 cut(s) 87, 88, 534
PspPI GGNCC 1 cut(s) 86
PspPPI RGGWCCY 1 cut(s) 86
RsaI GTAC 2 cut(s) 179, 445
RsaNI GTAC 2 cut(s) 178, 444
SatI GCNGC 3 cut(s) 35, 227, 475
Sau3AI GATC 3 cut(s) 132, 145, 388
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 330, 468
SetI ASST 5 cut(s) 120, 231, 319, 369, 376
SfaNI GCATC 1 cut(s) 163
SinI GGWCC 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
Sse9I AATT 7 cut(s) 52, 80, 137, 242, 293, 336, 601
SsiI CCGC 3 cut(s) 152, 193, 590
SspI AATATT 1 cut(s) 10
SspMI CTAG 1 cut(s) 371
StyD4I CCNGG 2 cut(s) 328, 466
TaaI ACNGT 2 cut(s) 206, 573
TaiI ACGT 1 cut(s) 319
TaqI TCGA 4 cut(s) 78, 121, 378, 554
TasI AATT 7 cut(s) 52, 80, 137, 242, 293, 336, 601
TatI WGTACW 1 cut(s) 443
TscAI CASTG 2 cut(s) 330, 582
TseFI GTSAC 2 cut(s) 206, 573
TseI GCWGC 3 cut(s) 34, 226, 474
Tsp45I GTSAC 2 cut(s) 206, 573
TspDTI ATGAA 3 cut(s) 42, 82, 435
TspGWI ACGGA 2 cut(s) 195, 419
TspRI CASTG 2 cut(s) 330, 582
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 336
XceI RCATGY 1 cut(s) 499
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.