pycom11g25860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0017990
Physical Location & Seq
Forward (+)
28548415 .. 28549014
600 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g25860.1

Sequence Viewer

Length: 600 bp
ATGCAGGAGAAGCTCAACCGCACCGAGCCTACTGGCATTTGCCACAGGATCTTCACCTTCATTGTGAATAGCCTGGTCGGTAGCCTCCTTGTTAAGCAAGTAATGTTAGGCCATCCGATGCCTGATCAAGACGAACAGCCTATGATTCCAGCTGCTAACCCTAAAGGGGTTGAGACAATGGACCATCATGAGGCTAGCCAGACGCCGGAGAAGGATTCTGGTCTTCAGATTCAAGTTCACTACAAGCAAACCGATGGCTTTGAATCGTGGACGCATATTGACAAGTTAGGTGATCCAGTGAAGGCCAATGTTTCCGAACACAAGGGCAACCTGACGAAGGTTTTGAGCATTAAAGATGTACCGAAACCAGATAAGGAGAAAAATAGTATGAAGAAAGGAAAGGGTGTAATGGGTGGCGAAAAGTTGACACTAGCAATGGAGATAGAAGATGATGATAAAGGATCAAAGATTGCGTTAAGGCGGCGCGTAAGGCCACTTTTTGACATTGCTCCAAACATAAACGAAAAATCAGAAGCGTTTATTCAGAGCAGAAGGGAAGCTATGAGGAGGAACTATGGCATTGAGCCGAGGAAGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

22.45

Weight (kDa)

8.87

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017990)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g24120
prunus_persica Prupe.8G247400_v2.0.a1
pyrus_communis pycom11g25860
rosa_chinensis RchiOBHm_Chr6g0291921
rosa_laevigata RLG00000012078
rosa_roxburghii Rroxscaffold_7G00175620
rosa_rugosa Rorug06G0221800
rosa_samantha Rh6AG335400 Rh6BG342800 Rh6CG349000 Rh6DG335700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 486
AciI CCGC 2 cut(s) 19, 481
AclWI GGATC 3 cut(s) 56, 287, 469
AcuI CTGAAG 1 cut(s) 209
AcyI GRCGYC 1 cut(s) 203
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 4 cut(s) 166, 190, 205, 337
AgsI TTSAA 2 cut(s) 233, 263
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 3 cut(s) 13, 152, 560
AluI AGCT 3 cut(s) 13, 152, 560
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 3 cut(s) 56, 287, 469
AoxI GGCC 3 cut(s) 109, 303, 491
ApeKI GCWGC 1 cut(s) 152
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
AspLEI GCGC 1 cut(s) 486
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 2 cut(s) 46, 302
AsuNHI GCTAGC 1 cut(s) 194
AvaII GGWCC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 139
BccI CCATC 3 cut(s) 120, 192, 248
BciT130I CCWGG 1 cut(s) 74
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 2 cut(s) 195, 431
BisI GCNGC 2 cut(s) 153, 482
BlsI GCNGC 2 cut(s) 154, 483
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 108
BmtI GCTAGC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 587
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 190, 205, 337
Bse1I ACTGG 2 cut(s) 37, 296
Bse3DI GCAATG 2 cut(s) 441, 504
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 587
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 4 cut(s) 166, 190, 205, 337
BseMI GCAATG 2 cut(s) 441, 504
BseNI ACTGG 2 cut(s) 37, 296
BseRI GAGGAG 1 cut(s) 580
BseXI GCAGC 1 cut(s) 139
Bsh1236I CGCG 1 cut(s) 486
BshFI GGCC 3 cut(s) 111, 305, 493
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 4 cut(s) 166, 190, 205, 337
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 3 cut(s) 111, 305, 493
Bsp143I GATC 4 cut(s) 48, 124, 292, 461
BspACI CCGC 2 cut(s) 19, 481
BspANI GGCC 3 cut(s) 111, 305, 493
BspFNI CGCG 1 cut(s) 486
BspHI TCATGA 1 cut(s) 187
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 3 cut(s) 56, 287, 469
BsrDI GCAATG 2 cut(s) 441, 504
BsrI ACTGG 2 cut(s) 37, 296
BssECI CCNNGG 1 cut(s) 587
BssMI GATC 4 cut(s) 48, 124, 292, 461
BssNI GRCGYC 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 597
BstENI CCTNNNNNAGG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 486
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 4 cut(s) 51, 127, 295, 464
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 4 cut(s) 48, 124, 292, 461
BstMWI GCNNNNNNNGC 2 cut(s) 10, 490
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BsuRI GGCC 3 cut(s) 111, 305, 493
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 196
CciI TCATGA 1 cut(s) 187
CfoI GCGC 1 cut(s) 486
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 2 cut(s) 211, 280
Csp6I GTAC 1 cut(s) 359
CviAII CATG 1 cut(s) 188
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 1 cut(s) 597
DpnI GATC 4 cut(s) 50, 126, 294, 463
DpnII GATC 4 cut(s) 48, 124, 292, 461
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 209
EcoNI CCTNNNNNAGG 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 72
FaeI CATG 1 cut(s) 191
FaiI YATR 7 cut(s) 143, 189, 276, 389, 518, 563, 576
FatI CATG 1 cut(s) 187
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 153, 482
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 2 cut(s) 153, 482
FspBI CTAG 2 cut(s) 195, 431
GlaI GCGC 1 cut(s) 485
GluI GCNGC 2 cut(s) 153, 482
HaeIII GGCC 3 cut(s) 111, 305, 493
HapII CCGG 1 cut(s) 206
HgaI GACGC 2 cut(s) 211, 280
HhaI GCGC 1 cut(s) 486
Hin1I GRCGYC 1 cut(s) 203
Hin1II CATG 1 cut(s) 191
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HincII GTYRAC 1 cut(s) 426
HindII GTYRAC 1 cut(s) 426
HinfI GANTC 4 cut(s) 145, 215, 229, 263
HpaII CCGG 1 cut(s) 206
HphI GGTGA 2 cut(s) 46, 302
Hpy166II GTNNAC 3 cut(s) 238, 270, 426
Hpy188I TCNGA 5 cut(s) 117, 228, 316, 532, 546
Hpy188III TCNNGA 2 cut(s) 128, 188
Hpy8I GTNNAC 3 cut(s) 238, 270, 426
HpyAV CCTTC 5 cut(s) 67, 205, 295, 331, 546
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 490
HpyF3I CTNAG 1 cut(s) 597
Hsp92I GRCGYC 1 cut(s) 203
Hsp92II CATG 1 cut(s) 191
HspAI GCGC 1 cut(s) 484
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 4 cut(s) 48, 124, 292, 461
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 108
MaeI CTAG 2 cut(s) 195, 431
MalI GATC 4 cut(s) 50, 126, 294, 463
MboI GATC 4 cut(s) 48, 124, 292, 461
MboII GAAGA 4 cut(s) 43, 215, 403, 458
MflI RGATCY 1 cut(s) 48
MnlI CCTC 5 cut(s) 95, 184, 558, 561, 582
MseI TTAA 3 cut(s) 93, 351, 476
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 2 cut(s) 10, 490
NdeII GATC 4 cut(s) 48, 124, 292, 461
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 1 cut(s) 191
PagI TCATGA 1 cut(s) 187
PfeI GAWTC 4 cut(s) 145, 215, 229, 263
PkrI GCNGC 2 cut(s) 154, 483
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspPI GGNCC 1 cut(s) 181
PsuI RGATCY 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
SaqAI TTAA 3 cut(s) 93, 351, 476
SatI GCNGC 2 cut(s) 153, 482
Sau3AI GATC 4 cut(s) 48, 124, 292, 461
Sau96I GGNCC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 74
SetI ASST 7 cut(s) 15, 59, 154, 292, 333, 342, 562
SfaNI GCATC 1 cut(s) 108
SinI GGWCC 1 cut(s) 181
SsiI CCGC 2 cut(s) 19, 481
SspMI CTAG 2 cut(s) 195, 431
StyD4I CCNGG 1 cut(s) 72
TauI GCSGC 1 cut(s) 484
TfiI GAWTC 4 cut(s) 145, 215, 229, 263
Tru1I TTAA 3 cut(s) 93, 351, 476
Tru9I TTAA 3 cut(s) 93, 351, 476
TscAI CASTG 1 cut(s) 303
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 49, 404
TspRI CASTG 1 cut(s) 303
VpaK11BI GGWCC 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 335
XspI CTAG 2 cut(s) 195, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.