DNA-directed RNA polymerase II
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G59180 |
| fragaria_vesca | FvH4_2g24550 FvH4_6g26920 FvH4_6g26920 FvH4_6g26920 |
| malus_domestica | MD06G1239600.v1.1 MD14G1245600.v1.1 |
| prunus_persica | Prupe.4G244700_v2.0.a1 Prupe.5G243500_v2.0.a1 |
| pyrus_communis | pycom06g21510 pycom14g20650 |
| rosa_chinensis | RchiOBHm_Chr2g0128671 RchiOBHm_Chr6g0292371 |
| rosa_laevigata | RLG00000012035 RLG00000019016 |
| rosa_multiflora | Rmu_sc0001354.1_g000012 Rmu_sc0003465.1_g000052 Rmu_sc0005514.1_g000001 Rmu_sc0023058.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00115380 Rroxscaffold_2G00115880 Rroxscaffold_7G00175130 |
| rosa_rugosa | Rorug06G0226000 |
| rosa_samantha | Rh2AG333500 Rh2BG341100 Rh2CG320100 Rh2DG357800 Rh6AG339300 Rh6BG346600 Rh6CG353400 Rh6DG339400 |
| rosa_wichuraiana | Rw2G026920 Rw6G029530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 464 |
| AccB1I | GGYRCC | 1 cut(s) | 464 |
| AciI | CCGC | 1 cut(s) | 412 |
| AclI | AACGTT | 1 cut(s) | 540 |
| AclWI | GGATC | 2 cut(s) | 388, 494 |
| AcsI | RAATTY | 1 cut(s) | 450 |
| AfaI | GTAC | 2 cut(s) | 466, 529 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 227 |
| AgsI | TTSAA | 2 cut(s) | 299, 418 |
| AjnI | CCWGG | 1 cut(s) | 48 |
| AluBI | AGCT | 3 cut(s) | 19, 70, 245 |
| AluI | AGCT | 3 cut(s) | 19, 70, 245 |
| Alw21I | GWGCWC | 1 cut(s) | 446 |
| Alw26I | GTCTC | 1 cut(s) | 187 |
| Alw44I | GTGCAC | 1 cut(s) | 442 |
| AlwI | GGATC | 2 cut(s) | 388, 494 |
| ApaLI | GTGCAC | 1 cut(s) | 442 |
| ApeKI | GCWGC | 3 cut(s) | 67, 99, 106 |
| ApoI | RAATTY | 1 cut(s) | 450 |
| Asp718I | GGTACC | 1 cut(s) | 464 |
| AspS9I | GGNCC | 1 cut(s) | 290 |
| AsuHPI | GGTGA | 1 cut(s) | 271 |
| AvaII | GGWCC | 1 cut(s) | 290 |
| BaeGI | GKGCMC | 1 cut(s) | 446 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 190, 223 |
| BanI | GGYRCC | 1 cut(s) | 464 |
| Bbv12I | GWGCWC | 1 cut(s) | 446 |
| BbvCI | CCTCAGC | 1 cut(s) | 282 |
| BbvI | GCAGC | 3 cut(s) | 79, 111, 118 |
| BccI | CCATC | 3 cut(s) | 262, 371, 476 |
| BciT130I | CCWGG | 1 cut(s) | 50 |
| BcoDI | GTCTC | 1 cut(s) | 187 |
| BfaI | CTAG | 1 cut(s) | 59 |
| BfmI | CTRYAG | 1 cut(s) | 246 |
| BglII | AGATCT | 1 cut(s) | 234 |
| BisI | GCNGC | 3 cut(s) | 68, 100, 107 |
| BlsI | GCNGC | 3 cut(s) | 69, 101, 108 |
| Bme1390I | CCNGG | 1 cut(s) | 50 |
| Bme18I | GGWCC | 1 cut(s) | 290 |
| BmgT120I | GGNCC | 1 cut(s) | 290 |
| BmiI | GGNNCC | 1 cut(s) | 466 |
| BmrFI | CCNGG | 1 cut(s) | 50 |
| BmrI | ACTGGG | 1 cut(s) | 185 |
| BmsI | GCATC | 1 cut(s) | 70 |
| BmuI | ACTGGG | 1 cut(s) | 185 |
| BpmI | CTGGAG | 1 cut(s) | 32 |
| Bpu10I | CCTNAGC | 1 cut(s) | 282 |
| BpuEI | CTTGAG | 1 cut(s) | 417 |
| BsaJI | CCNNGG | 1 cut(s) | 531 |
| BsaWI | WCCGGW | 2 cut(s) | 292, 325 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 227 |
| Bse1I | ACTGG | 2 cut(s) | 191, 202 |
| BseBI | CCWGG | 1 cut(s) | 50 |
| BseDI | CCNNGG | 1 cut(s) | 531 |
| BseGI | GGATG | 1 cut(s) | 334 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 227 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BseNI | ACTGG | 2 cut(s) | 191, 202 |
| BseSI | GKGCMC | 1 cut(s) | 446 |
| BseXI | GCAGC | 3 cut(s) | 79, 111, 118 |
| Bsh1285I | CGRYCG | 1 cut(s) | 40 |
| BshNI | GGYRCC | 1 cut(s) | 464 |
| BsiEI | CGRYCG | 1 cut(s) | 40 |
| BsiHKAI | GWGCWC | 1 cut(s) | 446 |
| BsiSI | CCGG | 2 cut(s) | 293, 326 |
| BslFI | GGGAC | 1 cut(s) | 184 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 227 |
| BsmAI | GTCTC | 1 cut(s) | 187 |
| BsmFI | GGGAC | 1 cut(s) | 184 |
| Bsp1286I | GDGCHC | 1 cut(s) | 446 |
| Bsp143I | GATC | 3 cut(s) | 234, 380, 499 |
| BspACI | CCGC | 1 cut(s) | 412 |
| BspCNI | CTCAG | 1 cut(s) | 274 |
| BspLI | GGNNCC | 1 cut(s) | 466 |
| BspPI | GGATC | 2 cut(s) | 388, 494 |
| BspT107I | GGYRCC | 1 cut(s) | 464 |
| BsrI | ACTGG | 2 cut(s) | 191, 202 |
| BssECI | CCNNGG | 1 cut(s) | 531 |
| BssMI | GATC | 3 cut(s) | 234, 380, 499 |
| BssT1I | CCWWGG | 1 cut(s) | 531 |
| Bst2UI | CCWGG | 1 cut(s) | 50 |
| BstC8I | GCNNGC | 1 cut(s) | 104 |
| BstDEI | CTNAG | 2 cut(s) | 238, 282 |
| BstF5I | GGATG | 1 cut(s) | 334 |
| BstKTI | GATC | 3 cut(s) | 237, 383, 502 |
| BstMAI | GTCTC | 1 cut(s) | 187 |
| BstMBI | GATC | 3 cut(s) | 234, 380, 499 |
| BstMCI | CGRYCG | 1 cut(s) | 40 |
| BstNI | CCWGG | 1 cut(s) | 50 |
| BstSCI | CCNGG | 1 cut(s) | 48 |
| BstSFI | CTRYAG | 1 cut(s) | 246 |
| BstSLI | GKGCMC | 1 cut(s) | 446 |
| BstV1I | GCAGC | 3 cut(s) | 79, 111, 118 |
| BstX2I | RGATCY | 1 cut(s) | 234 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 110 |
| BstYI | RGATCY | 1 cut(s) | 234 |
| BtsCI | GGATG | 1 cut(s) | 334 |
| BtsIMutI | CAGTG | 2 cut(s) | 198, 209 |
| Cac8I | GCNNGC | 1 cut(s) | 104 |
| Cfr13I | GGNCC | 1 cut(s) | 290 |
| CseI | GACGC | 1 cut(s) | 73 |
| Csp6I | GTAC | 2 cut(s) | 465, 528 |
| CviAII | CATG | 1 cut(s) | 110 |
| CviJI | RGCY | 6 cut(s) | 19, 70, 102, 157, 245, 287 |
| CviKI_1 | RGCY | 6 cut(s) | 19, 70, 102, 157, 245, 287 |
| CviQI | GTAC | 2 cut(s) | 465, 528 |
| DdeI | CTNAG | 2 cut(s) | 238, 282 |
| DpnI | GATC | 3 cut(s) | 236, 382, 501 |
| DpnII | GATC | 3 cut(s) | 234, 380, 499 |
| DraI | TTTAAA | 1 cut(s) | 226 |
| Eco130I | CCWWGG | 1 cut(s) | 531 |
| Eco47I | GGWCC | 1 cut(s) | 290 |
| EcoRII | CCWGG | 1 cut(s) | 48 |
| EcoT14I | CCWWGG | 1 cut(s) | 531 |
| ErhI | CCWWGG | 1 cut(s) | 531 |
| FaeI | CATG | 1 cut(s) | 113 |
| FaiI | YATR | 7 cut(s) | 14, 111, 335, 356, 366, 494, 545 |
| FaqI | GGGAC | 1 cut(s) | 184 |
| FatI | CATG | 1 cut(s) | 109 |
| Fnu4HI | GCNGC | 3 cut(s) | 68, 100, 107 |
| FokI | GGATG | 1 cut(s) | 341 |
| Fsp4HI | GCNGC | 3 cut(s) | 68, 100, 107 |
| FspBI | CTAG | 1 cut(s) | 59 |
| GluI | GCNGC | 3 cut(s) | 68, 100, 107 |
| GsuI | CTGGAG | 1 cut(s) | 32 |
| HapII | CCGG | 2 cut(s) | 293, 326 |
| HgaI | GACGC | 1 cut(s) | 73 |
| Hin1II | CATG | 1 cut(s) | 113 |
| HinfI | GANTC | 2 cut(s) | 55, 391 |
| HpaII | CCGG | 2 cut(s) | 293, 326 |
| HphI | GGTGA | 1 cut(s) | 271 |
| Hpy166II | GTNNAC | 2 cut(s) | 262, 444 |
| Hpy188I | TCNGA | 2 cut(s) | 376, 396 |
| Hpy8I | GTNNAC | 2 cut(s) | 262, 444 |
| HpyCH4IV | ACGT | 1 cut(s) | 540 |
| HpyCH4V | TGCA | 5 cut(s) | 99, 125, 216, 444, 459 |
| HpyF3I | CTNAG | 2 cut(s) | 238, 282 |
| HpySE526I | ACGT | 1 cut(s) | 540 |
| Hsp92II | CATG | 1 cut(s) | 113 |
| KpnI | GGTACC | 1 cut(s) | 468 |
| Kzo9I | GATC | 3 cut(s) | 234, 380, 499 |
| LpnPI | CCDG | 9 cut(s) | 35, 62, 116, 204, 215, 273, 306, 339, 516 |
| Lsp1109I | GCAGC | 3 cut(s) | 79, 111, 118 |
| LweI | GCATC | 1 cut(s) | 70 |
| MaeI | CTAG | 1 cut(s) | 59 |
| MaeII | ACGT | 1 cut(s) | 540 |
| MaeIII | GTNAC | 2 cut(s) | 61, 250 |
| MalI | GATC | 3 cut(s) | 236, 382, 501 |
| MboI | GATC | 3 cut(s) | 234, 380, 499 |
| MboII | GAAGA | 2 cut(s) | 295, 430 |
| MflI | RGATCY | 1 cut(s) | 234 |
| MhlI | GDGCHC | 1 cut(s) | 446 |
| MluCI | AATT | 4 cut(s) | 126, 361, 423, 450 |
| MmeI | TCCRAC | 1 cut(s) | 336 |
| MnlI | CCTC | 2 cut(s) | 36, 277 |
| MseI | TTAA | 4 cut(s) | 21, 165, 225, 387 |
| MspI | CCGG | 2 cut(s) | 293, 326 |
| MspR9I | CCNGG | 1 cut(s) | 50 |
| MvaI | CCWGG | 1 cut(s) | 50 |
| NdeII | GATC | 3 cut(s) | 234, 380, 499 |
| NlaIII | CATG | 1 cut(s) | 113 |
| NlaIV | GGNNCC | 1 cut(s) | 466 |
| NmuCI | GTSAC | 1 cut(s) | 61 |
| PfeI | GAWTC | 2 cut(s) | 55, 391 |
| PfoI | TCCNGGA | 1 cut(s) | 48 |
| PkrI | GCNGC | 3 cut(s) | 69, 101, 108 |
| Psp1406I | AACGTT | 1 cut(s) | 540 |
| Psp6I | CCWGG | 1 cut(s) | 48 |
| PspGI | CCWGG | 1 cut(s) | 48 |
| PspN4I | GGNNCC | 1 cut(s) | 466 |
| PspPI | GGNCC | 1 cut(s) | 290 |
| PsuI | RGATCY | 1 cut(s) | 234 |
| RsaI | GTAC | 2 cut(s) | 466, 529 |
| RsaNI | GTAC | 2 cut(s) | 465, 528 |
| SaqAI | TTAA | 4 cut(s) | 21, 165, 225, 387 |
| SatI | GCNGC | 3 cut(s) | 68, 100, 107 |
| Sau3AI | GATC | 3 cut(s) | 234, 380, 499 |
| Sau96I | GGNCC | 1 cut(s) | 290 |
| ScrFI | CCNGG | 1 cut(s) | 50 |
| SduI | GDGCHC | 1 cut(s) | 446 |
| SetI | ASST | 4 cut(s) | 21, 72, 247, 543 |
| SfaNI | GCATC | 1 cut(s) | 70 |
| SfcI | CTRYAG | 1 cut(s) | 246 |
| SinI | GGWCC | 1 cut(s) | 290 |
| SmlI | CTYRAG | 1 cut(s) | 432 |
| SmoI | CTYRAG | 1 cut(s) | 432 |
| Sse9I | AATT | 4 cut(s) | 126, 361, 423, 450 |
| SsiI | CCGC | 1 cut(s) | 412 |
| SspMI | CTAG | 1 cut(s) | 59 |
| StyD4I | CCNGG | 1 cut(s) | 48 |
| StyI | CCWWGG | 1 cut(s) | 531 |
| TaiI | ACGT | 1 cut(s) | 543 |
| TaqII | GACCGA | 1 cut(s) | 26 |
| TasI | AATT | 4 cut(s) | 126, 361, 423, 450 |
| TfiI | GAWTC | 2 cut(s) | 55, 391 |
| Tru1I | TTAA | 4 cut(s) | 21, 165, 225, 387 |
| Tru9I | TTAA | 4 cut(s) | 21, 165, 225, 387 |
| TscAI | CASTG | 2 cut(s) | 198, 209 |
| TseFI | GTSAC | 1 cut(s) | 61 |
| TseI | GCWGC | 3 cut(s) | 67, 99, 106 |
| Tsp45I | GTSAC | 1 cut(s) | 61 |
| TspRI | CASTG | 2 cut(s) | 198, 209 |
| VneI | GTGCAC | 1 cut(s) | 442 |
| VpaK11BI | GGWCC | 1 cut(s) | 290 |
| XapI | RAATTY | 1 cut(s) | 450 |
| XspI | CTAG | 1 cut(s) | 59 |